Metagenome Family F097544

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097544
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	45 residues
Representative Sequence	MRRPPGPKPHFLIGNMPLASADPLAVFLGWAREFGDIFYYRAAWI
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	47.12 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.038 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.77% β-sheet: 0.00% Coil/Unstructured: 71.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04715	Anth_synt_I_N	39.42
PF07488	Glyco_hydro_67M	9.62
PF01820	Dala_Dala_lig_N	4.81
PF07478	Dala_Dala_lig_C	4.81
PF03648	Glyco_hydro_67N	4.81
PF01261	AP_endonuc_2	2.88
PF07681	DoxX	1.92
PF07813	LTXXQ	0.96
PF00196	GerE	0.96
PF01039	Carboxyl_trans	0.96
PF00330	Aconitase	0.96
PF01654	Cyt_bd_oxida_I	0.96
PF13328	HD_4	0.96
PF14078	DUF4259	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0147	Anthranilate/para-aminobenzoate synthases component I	Amino acid transport and metabolism [E]	78.85
COG3661	Alpha-glucuronidase	Carbohydrate transport and metabolism [G]	14.42
COG1181	D-alanine-D-alanine ligase or related ATP-grasp enzyme	Cell wall/membrane/envelope biogenesis [M]	4.81
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.85
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.92
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.92
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.96
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.96
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.96
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.23 %
Unclassified	root	N/A	7.69 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	34.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.69 %
Unclassified	root	N/A	7.69 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.62 %
Unclassified	root	N/A	7.69 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	4.81 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.88 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.62 %
Unclassified	root	N/A	7.69 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	4.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.62 %
Unclassified	root	N/A	7.69 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.81 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.92 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.62 %
Unclassified	root	N/A	7.69 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.81 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.92 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.62 %
Unclassified	root	N/A	7.69 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	4.81 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.92 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.96 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10351737	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300004092\|Ga0062389_100922371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1057	Open in IMG/M
3300004635\|Ga0062388_100498856	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300005171\|Ga0066677_10102322	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300005367\|Ga0070667_102028453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005434\|Ga0070709_11314857	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005456\|Ga0070678_101751760	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005468\|Ga0070707_101986793	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005536\|Ga0070697_101988927	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005537\|Ga0070730_10458960	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005546\|Ga0070696_100127870	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300005547\|Ga0070693_101209658	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300005561\|Ga0066699_10199705	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300005561\|Ga0066699_10242158	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300006028\|Ga0070717_10294829	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300006028\|Ga0070717_11514747	Not Available	608	Open in IMG/M
3300006034\|Ga0066656_10175836	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300006059\|Ga0075017_100030074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	3576	Open in IMG/M
3300006237\|Ga0097621_101343793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300006791\|Ga0066653_10283461	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300006791\|Ga0066653_10420681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300006806\|Ga0079220_10274897	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300006904\|Ga0075424_102032175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300009088\|Ga0099830_10739090	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300009143\|Ga0099792_10338084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300009148\|Ga0105243_10806431	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300009176\|Ga0105242_10310442	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300009545\|Ga0105237_11926278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300010337\|Ga0134062_10013471	All Organisms → cellular organisms → Bacteria	3039	Open in IMG/M
3300010337\|Ga0134062_10143175	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300010339\|Ga0074046_10675525	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300010358\|Ga0126370_11747068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010358\|Ga0126370_11855754	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300010359\|Ga0126376_10281216	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300010360\|Ga0126372_11133838	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300010373\|Ga0134128_13219891	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010376\|Ga0126381_100092221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	3844	Open in IMG/M
3300010396\|Ga0134126_11870714	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300010397\|Ga0134124_12661467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300010398\|Ga0126383_11735302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300010401\|Ga0134121_10248607	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300010401\|Ga0134121_11372276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300012199\|Ga0137383_10846250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300012202\|Ga0137363_10408517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1132	Open in IMG/M
3300012207\|Ga0137381_11556273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300012351\|Ga0137386_10994885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300012532\|Ga0137373_11210348	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300012927\|Ga0137416_11427834	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012957\|Ga0164303_10391296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300012976\|Ga0134076_10222141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300013306\|Ga0163162_12623163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300013307\|Ga0157372_11776966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300013307\|Ga0157372_11777168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300014497\|Ga0182008_10459238	Not Available	694	Open in IMG/M
3300015053\|Ga0137405_1059698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1460	Open in IMG/M
3300015241\|Ga0137418_11075450	Not Available	575	Open in IMG/M
3300015356\|Ga0134073_10154832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300015357\|Ga0134072_10015071	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300016319\|Ga0182033_12217710	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300016387\|Ga0182040_10497248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	974	Open in IMG/M
3300017973\|Ga0187780_11437068	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300018431\|Ga0066655_10279859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300018431\|Ga0066655_10312418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1025	Open in IMG/M
3300018468\|Ga0066662_10256178	All Organisms → cellular organisms → Bacteria → Acidobacteria	1434	Open in IMG/M
3300019787\|Ga0182031_1409150	All Organisms → cellular organisms → Bacteria → Acidobacteria	4025	Open in IMG/M
3300019887\|Ga0193729_1094460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300020579\|Ga0210407_10160032	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300021171\|Ga0210405_10661434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300021559\|Ga0210409_10391518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1244	Open in IMG/M
3300021560\|Ga0126371_11384325	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	835	Open in IMG/M
3300025917\|Ga0207660_11185980	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300025924\|Ga0207694_10156618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1838	Open in IMG/M
3300025927\|Ga0207687_10117661	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300025928\|Ga0207700_10303624	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300025928\|Ga0207700_11578193	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300025941\|Ga0207711_11520946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300026325\|Ga0209152_10112326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1033	Open in IMG/M
3300026343\|Ga0209159_1204898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300026532\|Ga0209160_1041641	All Organisms → cellular organisms → Bacteria	2760	Open in IMG/M
3300026538\|Ga0209056_10502099	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300027061\|Ga0209729_1011663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300027775\|Ga0209177_10284978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300027846\|Ga0209180_10795858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300027875\|Ga0209283_10368506	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300027894\|Ga0209068_10072397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1782	Open in IMG/M
3300028381\|Ga0268264_11550909	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300029907\|Ga0311329_10011678	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8131	Open in IMG/M
3300029951\|Ga0311371_10156599	All Organisms → cellular organisms → Bacteria	3478	Open in IMG/M
3300031681\|Ga0318572_10720284	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	594	Open in IMG/M
3300031736\|Ga0318501_10705738	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031890\|Ga0306925_11143448	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031910\|Ga0306923_10811022	Not Available	1033	Open in IMG/M
3300031941\|Ga0310912_10650321	Not Available	819	Open in IMG/M
3300031945\|Ga0310913_10415999	Not Available	954	Open in IMG/M
3300031946\|Ga0310910_10206408	Not Available	1525	Open in IMG/M
3300031946\|Ga0310910_10234090	Not Available	1433	Open in IMG/M
3300031954\|Ga0306926_12638402	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	547	Open in IMG/M
3300031981\|Ga0318531_10076548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1453	Open in IMG/M
3300032076\|Ga0306924_10224335	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300032205\|Ga0307472_102284155	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032897\|Ga0335071_10627738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1026	Open in IMG/M
3300033289\|Ga0310914_10184046	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300034090\|Ga0326723_0571170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300034820\|Ga0373959_0154206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.62%
Host-Associated	Host-Associated	15.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Plants	Host-Associated → Plants	15.38%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Peat	Environmental → Terrestrial → Peat	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Sediment	Environmental → Aquatic → Sediment	1.92%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.54%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_103517371	3300001686	Soil	MPRRPPGPKPHFLIGNMPLASPDPLPIFSAWAAEFGDIFYYRAAWLHVYFLN
Ga0062389_1009223711	3300004092	Bog Forest Soil	MLQRPPGPNPHFLIGNIPLAARNPLAVFSRWAKDYGDIFYYRAGWIHVYFLN
Ga0062388_1004988563	3300004635	Bog Forest Soil	MLQRPPGPNPHFLIGNIPLAARNPLAVFSRWAKDYGDIFYYRAGWIHVY
Ga0066677_101023221	3300005171	Soil	MPTINYEFLMLRPPGPKPHFLIGNMPLASRNPLAVFSKWSAEFGDIF
Ga0070667_1020284531	3300005367	Switchgrass Rhizosphere	MPALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFYYRAG
Ga0070709_113148572	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPNRPPGPKPKFLIGNMPLASPDPLSIFSAWAREFGDIFYYRAAWLHVYFLN
Ga0070678_1017517601	3300005456	Miscanthus Rhizosphere	MPALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFYYRAGWIHVYFLNHPSL
Ga0070707_1019867931	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPTVSIRPPGPPPKFLIGNFPLFSPDPLAVFTRWAREFGDIF
Ga0070697_1019889271	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLRPPGPKPQFIIGNMPLASGDPLSVFEKWAHEFGDIFYYRAL
Ga0070730_104589602	3300005537	Surface Soil	MLSRPPGPKPHFLIGNMPLASPDPLPIFSSWAAEFGDIFYYRAAWL
Ga0070696_1001278702	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAREFGDIFYYR
Ga0070693_1012096582	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MPAVLRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAREFGDIFYY
Ga0066699_101997051	3300005561	Soil	MTAVSNRRPPGPSPRFLIGNFPLFRRDPLAVFTRWAREFGD
Ga0066699_102421581	3300005561	Soil	MPIRPPGPKPRFLIGNMPLASPDPLSIFSAWAREFGDIFYYRAAWLHVYF
Ga0070717_102948292	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRPPGPKPHFPIGNMPLASNDPLGTYLGWAREYGDIFYYR
Ga0070717_115147471	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRMPKLLRPPGPKPQFVIGNVPLAARNPLATLQSWANEYGDI
Ga0066656_101758362	3300006034	Soil	MPRRPPGPKPHFLIGNMPLASPDPLPIFSAWAAEFGDIFYYRA
Ga0075017_1000300741	3300006059	Watersheds	MSVALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFYY
Ga0097621_1013437931	3300006237	Miscanthus Rhizosphere	MPVAIQSRPPGPKPHFPIGNFPLAHANPLATFEKWAREFGDIF
Ga0066653_102834612	3300006791	Soil	MANRRITRPPGPEQHFLIGNFPLGRPDPLAVFTGWAREFGDI
Ga0066653_104206812	3300006791	Soil	MPNRSITRPPGPRPLFLIGNFPLGSPDPLAVFTGWAREFGD
Ga0079220_102748972	3300006806	Agricultural Soil	MIRRPPGPKPRFLIGNLPLAGPDPLSVFLKWVQEFGDIFYYRAVWLRVYFL
Ga0075424_1020321751	3300006904	Populus Rhizosphere	MPQNPLPPGPKPRFLIGNMPLASADPLARFENWARE
Ga0099830_107390901	3300009088	Vadose Zone Soil	MNRPPGPRPHFIIGNMPLASREPLSVFTKWAAEFGDI
Ga0099792_103380841	3300009143	Vadose Zone Soil	MPTVSIRPPGPPPKFLIGNFPLFSPDPLAVFTRWAREFGDIFYYRAGWIDV
Ga0105243_108064312	3300009148	Miscanthus Rhizosphere	MPKTLTHRPPGPKPHFPIGNFPLAHANPLATFEQWTHEFGDIFYYRAGWLPVYFLN
Ga0105242_103104422	3300009176	Miscanthus Rhizosphere	MKRPPGPKPHFPYGNMPLAGDDPLGTFLGWAREFG
Ga0105237_119262782	3300009545	Corn Rhizosphere	MPVAIQSRPPGPKPHFPIGNFPLAHANPLATFEKW
Ga0134062_100134714	3300010337	Grasslands Soil	MANRRITRPPGPEPHFLIGNFPLGRPDPLAVFTGWAREFGDIFYYRAG
Ga0134062_101431752	3300010337	Grasslands Soil	MLRPPGPKPHFLIGNMPLASRNPLAVFSKWSAEFGDIFYYRAAWIQV
Ga0074046_106755252	3300010339	Bog Forest Soil	MLQRPPVPKPHFLIGNIPLAARDPLAVFSRWAKDYG
Ga0126370_117470682	3300010358	Tropical Forest Soil	MLRPPGPKPHFIIGNMPLAGHDPLTIFEKWAREYGDIFYYRALWIHVYFL
Ga0126370_118557542	3300010358	Tropical Forest Soil	MRRPPGPQPHFLIGNMPLAHRDPLGTFEKWAREFGDIFYYR
Ga0126376_102812162	3300010359	Tropical Forest Soil	MLRPPGPPPHFLIGNLPLAGKDPLATFLAWAREFGDIFYY
Ga0126372_111338382	3300010360	Tropical Forest Soil	MLRPPGPKPRFLVGNLPLAGRDPLATFLSWAREFGDIFYYRAGWLHVYF
Ga0134128_132198911	3300010373	Terrestrial Soil	MIRRPPGPKPRFLIGNLPLAGGDPLSVFLKWAQEFGDIFYYRA
Ga0126381_1000922211	3300010376	Tropical Forest Soil	MLRPPGPKPRFLVGNLPLAGRDPLATFLSWAREFGDIFYYRAGWLHVYFLNHP
Ga0134126_118707142	3300010396	Terrestrial Soil	MKRPPGPKPHFLIGNMPLANRDPLATFLKWAREFGDIFYYR
Ga0134124_126614671	3300010397	Terrestrial Soil	MPAVLRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAREFGDI
Ga0126383_117353021	3300010398	Tropical Forest Soil	MPQNPLPPGPKPRFLIGNMPLASADPLARFENWAREYG
Ga0134121_102486073	3300010401	Terrestrial Soil	MIRRPPGPKPRFLIGNLPLAGGDPLSVFLKWAQEFGDIFYYRAVWLRVYFLNHP
Ga0134121_113722762	3300010401	Terrestrial Soil	MPVAIQSRPPGPKPHFPIGNFPLAHANPLATFEKWAREFGDIFYYRAG
Ga0137383_108462501	3300012199	Vadose Zone Soil	MLRPPGPKPHFIIGNMPLAAHDPLATFEQWAREFGDIFYYRALW
Ga0137363_104085171	3300012202	Vadose Zone Soil	MPNRSITRPPGPEPHFLVGNFPLGRPDPLAVFSGWAREFGDIFYYRAG
Ga0137381_115562732	3300012207	Vadose Zone Soil	MANRRITRPPGPRPHFLIGNFPLGRPDPLAVFTGWAREFGDIF
Ga0137386_109948853	3300012351	Vadose Zone Soil	MPAPTRDYPPGPKPHFLIGNFPLANRDPLRVFTGWAREFG
Ga0137373_112103481	3300012532	Vadose Zone Soil	MANRRITRPPGPEPHFLIGNFPLGRPDPLAVFTGWAREFGDIFYYRAGWIHVYFLNSPE
Ga0137416_114278342	3300012927	Vadose Zone Soil	MRRPPGPKPHFLIGNMPLASADPLAVFLGWAREFGDIFYYRAAWI
Ga0164303_103912961	3300012957	Soil	MPALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFYYRAGWIHVYFLNHPS
Ga0134076_102221412	3300012976	Grasslands Soil	VIFVVYQMPNRSITRPPGPEPHFLIGNFPLGSPDPLAVFSGWAREFGDIFYYRAGWIH
Ga0163162_126231632	3300013306	Switchgrass Rhizosphere	MPAVSRRPPGPPPRFLIGNLPLFNADPLAIYTRWAREFGD
Ga0157372_117769661	3300013307	Corn Rhizosphere	MPKTLTHRPPGPKPHFPIGNFPLAHANPLATFEQWTHEFGDIFYYRAGWLP
Ga0157372_117771681	3300013307	Corn Rhizosphere	MPAVLRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAR
Ga0182008_104592381	3300014497	Rhizosphere	MKRPPGPKPHFLIGNMPLASSDPLTEFQTWAREFGDI
Ga0137405_10596981	3300015053	Vadose Zone Soil	MPAVSRRPPGPPPRFLIGNLPLLFSPDPLAIYTRWAREFGDI
Ga0137418_110754501	3300015241	Vadose Zone Soil	MKRPPGPKPHFLIGNMPLASSYPLAVFSKWGREFGDIFYYRAAWL
Ga0134073_101548321	3300015356	Grasslands Soil	MANRRITRPPGPEPHFLIGNFPLGRPDPLAVFTGWAREFGDIFYYRAGWIHVY
Ga0134072_100150712	3300015357	Grasslands Soil	MPNRSITRPPGPKPRFLVGNFPLGRPDPLAVFSGWAREFGDIFY
Ga0182033_122177101	3300016319	Soil	MQLRPPGPKPHFLIGNIPLANSNPLAVFQRWAAEYGDIFYYR
Ga0182040_104972482	3300016387	Soil	MLRPSGPKPHFLVGNIPLAGPAPLDTFTRWAAQYGDIFYYRAAWLHVYFLN
Ga0187780_114370681	3300017973	Tropical Peatland	MLRPPGPKPQFLIGNIPLAGRDPLATYARWAAQYGDIF
Ga0066655_102798592	3300018431	Grasslands Soil	MPNRSITRPPGPEPHFLIGNFPLGRPYPLAVFTGWAREFDDIFYYRAGWIHV
Ga0066655_103124181	3300018431	Grasslands Soil	MPNRSITRPPGPEPHFLIGNFPLGRPDPLAVFSGWAREFGDFFYYRAGWIHVYFLNSPEL
Ga0066662_102561782	3300018468	Grasslands Soil	MRRPPGPRPKFLIGNMPLASRDPLAVLAGWAREFG
Ga0182031_14091506	3300019787	Bog	MLQRPPGPKPRFLIGNIPLASRDPLAVFRRWAQDYGDIFYYRAGWIHVYF
Ga0193729_10944601	3300019887	Soil	MPATSHRRPPGPPPRFLVGNFPLFSDDPLAVFSRWAREFGDIFYYRAGWINVYFL
Ga0210407_101600323	3300020579	Soil	MPAIRRPPGPRPRFIVGQFPLLGDDPLAVFTRWARDFGDIFYYRAGWIHVYFLN
Ga0210405_106614341	3300021171	Soil	MPALSRRPPGPPPRLLIGNLPLFSSDPLAIYTRWAREFGDIFYYRAGWIDVYFLNHPN
Ga0210409_103915181	3300021559	Soil	MLPRPPGPRPHFLIGNMPLASRDPLAVFTRWAGEFGDVFY
Ga0126371_113843251	3300021560	Tropical Forest Soil	MLRPPGPKPRFLIGNIPLVGPNPLDTFTSWAAEYGDIFYYRAAWL
Ga0207660_111859802	3300025917	Corn Rhizosphere	MLRPPGPKPHFLIGNMPLASRNPLAQFSQWANEFGDIFYYRAAWIHVYF
Ga0207694_101566181	3300025924	Corn Rhizosphere	MRRPPGPKPHFLIGNMPLASSDSLQTFLRWSQMFGDVFYYRAIWLHVYFLNDPD
Ga0207687_101176612	3300025927	Miscanthus Rhizosphere	MPALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFY
Ga0207700_103036241	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIRRPPGPKPRFLIGNLPLAGGDPLSVFLKWAQEFGDIF
Ga0207700_115781931	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MFSRPPGPKPHFLIGNMPLASPDPLPIFSAWAAEFGDIFYYRAAWLH
Ga0207711_115209462	3300025941	Switchgrass Rhizosphere	MPALRRPPGPPIRRLIGNFPLFSPDPLAVFTGWAREFGDIFYYRAGWIHV
Ga0209152_101123262	3300026325	Soil	MANRRITRPPGPKPRFLVGNFPLGRPDPLAVFSGWAREFGNIIY
Ga0209159_12048982	3300026343	Soil	MPNRSITRPPGPKPRFLVGNFPLGRPDPLAVFSGWAREFGDIFYYRAGWI
Ga0209160_10416411	3300026532	Soil	MPNRSITRPPGPEPHFLIGNFPLGRPDPLAVFTGWAREFGDIFYYRAGWIH
Ga0209056_105020991	3300026538	Soil	MTRNISRRPPGPKPHFIFGNMPLASHDPLAVFSAWAREFGDIFYYRAIWINVFFLNHPDL
Ga0209729_10116632	3300027061	Forest Soil	MRPRPPGPRPHFLIGNMPLASRNPLAVFTRWAREFG
Ga0209177_102849782	3300027775	Agricultural Soil	MPAVLRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAREF
Ga0209180_107958582	3300027846	Vadose Zone Soil	MPAVSCRPPGPPPRFLIGNLPLFSSDPLAIYTRWAREFGDI
Ga0209283_103685062	3300027875	Vadose Zone Soil	MSLRPPGPKPHFLIGNMPLASRNPLAVFSRWAGEYGDL
Ga0209068_100723971	3300027894	Watersheds	MPAFPHRRPPGPPPRFLIGNFPLFSPDPLAVFTRWAREFGDIFYY
Ga0268264_115509092	3300028381	Switchgrass Rhizosphere	MKRPPGPKPHFLYGNMPLAGNDPLGTFLLWAREYGDIFY
Ga0311329_100116781	3300029907	Bog	MLQRPPGPKPRFLIGNIPLASRDPLAVFRRWAQDYGDIFYYRAGWIH
Ga0311371_101565993	3300029951	Palsa	MLQRPPGPRPRFLIGNLPLASRNPLAVFSRWAKDYGDIFYYRAGWIHVYFLILT
Ga0318572_107202841	3300031681	Soil	MLRPPGPKPHVLIGNIPLAGQAPLDTFRRWASEYGDVFYY
Ga0318501_107057382	3300031736	Soil	MLRPSGPKPHFLVGNIPLAGPAPLDTFTRWAAQYGDIFYY
Ga0306925_111434481	3300031890	Soil	MLCPPSPKPHFLIGNVSLAGPAPLETFTRWASEYGDIFYYRAAW
Ga0306923_108110221	3300031910	Soil	MLSSAAPKRPPGPKPHFLIGNMPLASPDPLSLFTTWAREFGDMFY
Ga0310912_106503212	3300031941	Soil	MLRRPPGPKPHFLIGNVPLASENPLAVFSCWAKDFGDIFY
Ga0310913_104159992	3300031945	Soil	MLRRPPGPKPHFLIGNVPLASENPLAVFSCWAKDF
Ga0310910_102064081	3300031946	Soil	MLHPPGPKPHFLIGNVPLAGRSPLDTFRRWTAEYGDI
Ga0310910_102340902	3300031946	Soil	MLRRPPGPKPHFLIGNVPLASENPLAVFSCWAKDFGDIF
Ga0306926_126384022	3300031954	Soil	MLRPPGPKPHVLIGNIPLAGQAPLDTFRRWASEYGDVFYYRAAWLHVY
Ga0318531_100765481	3300031981	Soil	MLRPPGPKPHFLIGNIPLAGPDPLGTFTRWAAEYGDI
Ga0306924_102243354	3300032076	Soil	MLRRPPGPKPHFLIGNVPLASENPLAVFSCWAKDFGDIFYYRALWLQVY
Ga0307472_1022841551	3300032205	Hardwood Forest Soil	MIRRPPGPKPRFLIGNLPLAGPDPLSVFLKWAQEFGDIFYYRAAWLRVYFLNHPDL
Ga0335071_106277381	3300032897	Soil	MLFPPGPKPRFLIGNVPLFGRDPLGTFARWAAEYGDIFY
Ga0310914_101840463	3300033289	Soil	MLRRPPGPKPHFLIGNVPLASENPLAVFSCWAKDFGDIFYYRALWLQVYFLNDP
Ga0326723_0571170_3_152	3300034090	Peat Soil	MPAVLRRPPGPAPRFLIGNLPLFNSDPLAIYTRWAREFGDIFYYRAAWMD
Ga0373959_0154206_1_117	3300034820	Rhizosphere Soil	MRRPPGPPPRFLIGNLPLFDPDPLAIYTRWAREFGDIFY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097544

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences