NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F097538

Metagenome Family F097538

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097538
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 43 residues
Representative Sequence EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD
Number of Associated Samples 92
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen
(12.500 % of family members)
Environment Ontology (ENVO) Unclassified
(38.462 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.077 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.
1JGIcombinedJ13530_1067514042
2JGI24744J21845_100971871
3Ga0063356_1054960171
4Ga0062595_1018801182
5Ga0070658_101789744
6Ga0070689_1003486981
7Ga0070687_1013319131
8Ga0070673_1010392123
9Ga0070672_1000311119
10Ga0070672_1000491463
11Ga0068856_1011468332
12Ga0068859_1000375881
13Ga0068864_1012698801
14Ga0068851_107832961
15Ga0068863_1013398222
16Ga0068863_1027239462
17Ga0066652_1008039741
18Ga0075028_1004421381
19Ga0097621_1017553432
20Ga0066653_106414131
21Ga0075425_1013872241
22Ga0066710_1034301871
23Ga0105243_101170187
24Ga0075423_112463981
25Ga0105100_102349352
26Ga0115028_120219982
27Ga0105237_110915862
28Ga0105249_114977703
29Ga0134124_122135921
30Ga0126383_118193883
31Ga0136623_105160993
32Ga0137376_104325123
33Ga0157374_115033481
34Ga0157378_113988241
35Ga0075339_11161532
36Ga0182008_109892342
37Ga0182019_107636882
38Ga0157379_116870661
39Ga0157376_119321152
40Ga0132258_104222494
41Ga0132255_1049172841
42Ga0184605_101449981
43Ga0193735_11655741
44Ga0207697_104205531
45Ga0209483_10290301
46Ga0209483_11219202
47Ga0207688_107352661
48Ga0207693_112483201
49Ga0207662_111160713
50Ga0207662_113182391
51Ga0207681_105915711
52Ga0207650_105617562
53Ga0207686_104029752
54Ga0207670_103084121
55Ga0207704_118503871
56Ga0207711_120908282
57Ga0207689_103730443
58Ga0207679_100148667
59Ga0207651_112918222
60Ga0207640_108590451
61Ga0207658_106891431
62Ga0207658_106977271
63Ga0207703_101774071
64Ga0207641_113805653
65Ga0207648_109259802
66Ga0207648_113749773
67Ga0207674_123036471
68Ga0209797_101512481
69Ga0302166_100545331
70Ga0302294_102041681
71Ga0302263_100230764
72Ga0311334_117017111
73Ga0302172_101181832
74Ga0311349_100189031
75Ga0311349_113391172
76Ga0311349_116129402
77Ga0311360_107175351
78Ga0311360_108333841
79Ga0170824_1227002481
80Ga0311364_124159551
81Ga0302321_1000315315
82Ga0302321_1014462303
83Ga0302321_1024839521
84Ga0315899_117264082
85Ga0315297_108350612
86Ga0310900_103419451
87Ga0311367_111003793
88Ga0310901_102230072
89Ga0307409_1024102221
90Ga0308176_102259263
91Ga0307416_1024328602
92Ga0318524_104098932
93Ga0315277_108971661
94Ga0315281_111540093
95Ga0315283_106823101
96Ga0307471_1011892843
97Ga0315270_107300881
98Ga0315286_108793152
99Ga0315287_113095031
100Ga0315273_112825763
101Ga0315273_115101692
102Ga0316619_104255302
103Ga0247829_101356962
104Ga0364927_0086580_738_857
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
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Variant

510152025303540EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFDSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Wetland
Sediment
Wetland Sediment
Freshwater
Polar Desert Sand
Wetland
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Soil
Natural And Restored Wetlands
Fen
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Fen
Bog
Sediment
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
8.7%3.8%4.8%12.5%3.8%5.8%3.8%2.9%2.9%5.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10675140423300001213WetlandATNALRLEYHLSRTLTLRAEAGTVSGVGIFYRRSFE*
JGI24744J21845_1009718713300002077Corn, Switchgrass And Miscanthus RhizosphereTNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE*
Ga0063356_10549601713300004463Arabidopsis Thaliana RhizosphereRLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD*
Ga0062595_10188011823300004479SoilKLSLVYEQGLTVASNALRIEYALTRTITLRAEAGTISSLGLYYRRSYD*
Ga0070658_1017897443300005327Corn RhizosphereTLGYEQGLWLASGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE*
Ga0070689_10034869813300005340Switchgrass RhizosphereGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD*
Ga0070687_10133191313300005343Switchgrass RhizosphereGLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD*
Ga0070673_10103921233300005364Switchgrass RhizosphereRLTLVYEQGLTLATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD*
Ga0070672_10003111193300005543Miscanthus RhizosphereRLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0070672_10004914633300005543Miscanthus RhizosphereISDRLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD*
Ga0068856_10114683323300005614Corn RhizosphereGYEQGLSVAANAVRLEYALTNTLTLRAEAGTVSGIGVYYRRTYN*
Ga0068859_10003758813300005617Switchgrass RhizosphereTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0068864_10126988013300005618Switchgrass RhizosphereTLVYEQGLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD*
Ga0068851_1078329613300005834Corn RhizosphereDRLNLVYEQGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD*
Ga0068863_10133982223300005841Switchgrass RhizosphereSLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD*
Ga0068863_10272394623300005841Switchgrass RhizosphereATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRAFD*
Ga0066652_10080397413300006046SoilLSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF*
Ga0075028_10044213813300006050WatershedsLTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE*
Ga0097621_10175534323300006237Miscanthus RhizosphereLGYEQGLSIAANALRLEYTLTNTLTVRAEAGAISGVGIYYRRSYD*
Ga0066653_1064141313300006791SoilQGLSIASNALRLEYALTKTLTLRAEAGTVSGVGVYYRRTYN*
Ga0075425_10138722413300006854Populus RhizosphereLMLVYEQGLTVAKNALRLEYALTRTVTLRAEAGVISSFGIYYRKVFD*
Ga0066710_10343018713300009012Grasslands SoilLSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF
Ga0105243_1011701873300009148Miscanthus RhizosphereLTDRLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD*
Ga0075423_1124639813300009162Populus RhizosphereGLSIAANALRLEYALTNTLTVRAEAGAVSGIGLYYRRTYN*
Ga0105100_1023493523300009166Freshwater SedimentLPEKLYLFAEQGRTVATNGLKLESALTRNSTLRAEAGVVSGFGIYYRRSFE*
Ga0115028_1202199823300009179WetlandNALRLEYSLTRTLTLRAEAGVISGFGIYYRRTFE*
Ga0105237_1109158623300009545Corn RhizosphereSLVYEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD*
Ga0105249_1149777033300009553Switchgrass RhizosphereINDKLTLVYEQGLTVAKNALRLEYSLTRTLTLRAEAGVVSSFGIYYRRVFD*
Ga0134124_1221359213300010397Terrestrial SoilTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD*
Ga0126383_1181938833300010398Tropical Forest SoilGLTVATNALRVEYALSNTLSVRAEAGTVSGVGLYYRRNFE*
Ga0136623_1051609933300012045Polar Desert SandLSLIYEQGLSLASNALRIEYALTRTLTLRAEAGTVSGIGIFYRRTYD*
Ga0137376_1043251233300012208Vadose Zone SoilAANALRLEYALTNTLTLRAEAGAVSGIGVYYRRAFD*
Ga0157374_1150334813300013296Miscanthus RhizosphereLTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD*
Ga0157378_1139882413300013297Miscanthus RhizosphereLVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD*
Ga0075339_111615323300014316Natural And Restored WetlandsVATNALRLEYELTRSLRLRAEAGTVSGLGIYFRRSFD*
Ga0182008_1098923423300014497RhizosphereASGALRLEYALTRTLTLRAEAGTVSALGLIYRRSFE*
Ga0182019_1076368823300014498FenTVATNALRIEYTLSRTLTLRAEAGVVSSVGLYFRRTYD*
Ga0157379_1168706613300014968Switchgrass RhizosphereNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD*
Ga0157376_1193211523300014969Miscanthus RhizosphereYEQGLTIATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRSFD*
Ga0132258_1042224943300015371Arabidopsis RhizosphereLTVAYEQGLTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE*
Ga0132255_10491728413300015374Arabidopsis RhizosphereLSENLTVAWEQGLTVATNALRIEYSLTTSLSVRAEAGTVSGLGLFYRKSFE*
Ga0184605_1014499813300018027Groundwater SedimentQGLSIAANALRLEYALTNTLTLRAEAGMVSGVGVYYRRAFD
Ga0193735_116557413300020006SoilKLMLVYEQGLTVATNALRLEYSLSRTLTLRAEGGAISGFGIYYRRVFD
Ga0207697_1042055313300025315Corn, Switchgrass And Miscanthus RhizosphereATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD
Ga0209483_102903013300025862Arctic Peat SoilLSNRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD
Ga0209483_112192023300025862Arctic Peat SoilSRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD
Ga0207688_1073526613300025901Corn, Switchgrass And Miscanthus RhizosphereGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD
Ga0207693_1124832013300025915Corn, Switchgrass And Miscanthus RhizosphereVYEQGLTIATNALRIEYTLTRTITLRAEAGTVASVGIYYRKTFD
Ga0207662_1111607133300025918Switchgrass RhizosphereLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD
Ga0207662_1131823913300025918Switchgrass RhizosphereYEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD
Ga0207681_1059157113300025923Switchgrass RhizosphereYQQGLSIATNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE
Ga0207650_1056175623300025925Switchgrass RhizosphereGLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207686_1040297523300025934Miscanthus RhizosphereTNTLRIEYALTRTVTLRAEAGTVGSVGVFYRRSFD
Ga0207670_1030841213300025936Switchgrass RhizosphereGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD
Ga0207704_1185038713300025938Miscanthus RhizosphereLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207711_1209082823300025941Switchgrass RhizosphereRLTLVYEQGLTVATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD
Ga0207689_1037304433300025942Miscanthus RhizosphereSLVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD
Ga0207679_1001486673300025945Corn RhizosphereSGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE
Ga0207651_1129182223300025960Switchgrass RhizosphereQGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD
Ga0207640_1085904513300025981Corn RhizosphereLVYEQGLTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD
Ga0207658_1068914313300025986Switchgrass RhizosphereEQGLSLAQNALRIEYALSRTLTLRAEAGAVASFGLYYRRSYD
Ga0207658_1069772713300025986Switchgrass RhizosphereFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207703_1017740713300026035Switchgrass RhizosphereKRISDRLTLVYEQGLSLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD
Ga0207641_1138056533300026088Switchgrass RhizosphereERLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207648_1092598023300026089Miscanthus RhizosphereEQGLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE
Ga0207648_1137497733300026089Miscanthus RhizosphereGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD
Ga0207674_1230364713300026116Corn RhizosphereGYEQGLSLAANALRLEYALTSTLTLRAEAGTVSGVGVYYRRTYN
Ga0209797_1015124813300027831Wetland SedimentDRLSLVYEQGLSLANNTLRLEYELTRSLRLRAEAGTISGVGLYFGRSFD
Ga0302166_1005453313300028652FenTVANNALRIEYALTRSLTLRAEAGIISSLGLYFRRSYD
Ga0302294_1020416813300028740FenEQGLTVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0302263_1002307643300028869FenTLVYEQGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0311334_1170171113300029987FenLSESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302172_1011818323300030003FenRMTLVYEQGLTVATNALRIEYTLSRTLTLRAEAGVVSSLGLFFRRTYD
Ga0311349_1001890313300030294FenTVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0311349_1133911723300030294FenSETLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0311349_1161294023300030294FenTDRLTLVYEQGLTVATNALRLEYSLTRAITLRAEAGTISSVGVYYRRNFD
Ga0311360_1071753513300030339BogANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD
Ga0311360_1083338413300030339BogQGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0170824_12270024813300031231Forest SoilLVYAQGLTVATNALRIEYALTRTLTLRAEAGVVGSFGIYYRRSFD
Ga0311364_1241595513300031521FenWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302321_10003153153300031726FenLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE
Ga0302321_10144623033300031726FenSESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0302321_10248395213300031726FenLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE
Ga0315899_1172640823300031784FreshwaterEQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD
Ga0315297_1083506123300031873SedimentEQGLTVATNALRLEYSLSRTLTLRAEAGAISGFGIYYRRTFE
Ga0310900_1034194513300031908SoilTNALRLEYALTRTWTLRAEAGTVSGFGIYYRRAFD
Ga0311367_1110037933300031918FenTVANNALRIEYALTKSLTLRAEAGIISSLGLYFRRSYD
Ga0310901_1022300723300031940SoilRLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD
Ga0307409_10241022213300031995RhizosphereDRLSLVYEQGLTAATNALRIEYALTRTLTLRAEAGVISSVGLYFRRTFD
Ga0308176_1022592633300031996SoilTIGYEQGLALASSAVRIEYALTRTLTLRAEAGAASSLSLVYRRLFQ
Ga0307416_10243286023300032002RhizosphereATNALRIEYTLTRTLTLRAEAGVVSSVGLYFRRTFD
Ga0318524_1040989323300032067SoilQGLTVAKNALRLDYALTRTLTLRAEGGAISSVGIFYRRVFD
Ga0315277_1089716613300032118SedimentDNLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE
Ga0315281_1115400933300032163SedimentATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE
Ga0315283_1068231013300032164SedimentATNALRLEYDLTRSLTRRAEAGTVGGVGLYFRRSFD
Ga0307471_10118928433300032180Hardwood Forest SoilVYEQGLTVANNALRIEYALTRTLTLRAEAGIISSLGVYFRRSYD
Ga0315270_1073008813300032275SedimentDRLTIVYEQGLTIANNALRLEYTLSRTLTLRAETGVVSGVGVYYRHAFE
Ga0315286_1087931523300032342SedimentQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE
Ga0315287_1130950313300032397SedimentTDRLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE
Ga0315273_1128257633300032516SedimentLANNTLRLEYELTRSLRLRAEAGAISGIGIFFRRSFD
Ga0315273_1151016923300032516SedimentDRLSLVYEQGLTVATNALRLEYDLTRSLMLRAEAGTVGGIGLYFRRSFD
Ga0316619_1042553023300033414SoilRLTERLSLVYEQGLTVATNGLRIEYALSRTMTLRAEAGTVSGVGIYYRRTMR
Ga0247829_1013569623300033550SoilRLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD
Ga0364927_0086580_738_8573300034148SedimentLSVANNALRIEYALTRTLTVRAEAGVVSSLGLYFRRTYD


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