Basic Information | |
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Family ID | F097538 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 43 residues |
Representative Sequence | EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.60 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (12.500 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.462 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (48.077 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.14% β-sheet: 0.00% Coil/Unstructured: 42.86% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.60 |
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Visualization |
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Freshwater Sediment Wetland Sediment Wetland Sediment Freshwater Polar Desert Sand Wetland Groundwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Soil Arctic Peat Soil Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Fen Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Fen Bog Sediment Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ13530_1067514042 | 3300001213 | Wetland | ATNALRLEYHLSRTLTLRAEAGTVSGVGIFYRRSFE* |
JGI24744J21845_100971871 | 3300002077 | Corn, Switchgrass And Miscanthus Rhizosphere | TNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE* |
Ga0063356_1054960171 | 3300004463 | Arabidopsis Thaliana Rhizosphere | RLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD* |
Ga0062595_1018801182 | 3300004479 | Soil | KLSLVYEQGLTVASNALRIEYALTRTITLRAEAGTISSLGLYYRRSYD* |
Ga0070658_101789744 | 3300005327 | Corn Rhizosphere | TLGYEQGLWLASGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE* |
Ga0070689_1003486981 | 3300005340 | Switchgrass Rhizosphere | GLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD* |
Ga0070687_1013319131 | 3300005343 | Switchgrass Rhizosphere | GLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD* |
Ga0070673_1010392123 | 3300005364 | Switchgrass Rhizosphere | RLTLVYEQGLTLATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD* |
Ga0070672_1000311119 | 3300005543 | Miscanthus Rhizosphere | RLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD* |
Ga0070672_1000491463 | 3300005543 | Miscanthus Rhizosphere | ISDRLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD* |
Ga0068856_1011468332 | 3300005614 | Corn Rhizosphere | GYEQGLSVAANAVRLEYALTNTLTLRAEAGTVSGIGVYYRRTYN* |
Ga0068859_1000375881 | 3300005617 | Switchgrass Rhizosphere | TIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD* |
Ga0068864_1012698801 | 3300005618 | Switchgrass Rhizosphere | TLVYEQGLTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD* |
Ga0068851_107832961 | 3300005834 | Corn Rhizosphere | DRLNLVYEQGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD* |
Ga0068863_1013398222 | 3300005841 | Switchgrass Rhizosphere | SLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD* |
Ga0068863_1027239462 | 3300005841 | Switchgrass Rhizosphere | ATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRAFD* |
Ga0066652_1008039741 | 3300006046 | Soil | LSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF* |
Ga0075028_1004421381 | 3300006050 | Watersheds | LTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE* |
Ga0097621_1017553432 | 3300006237 | Miscanthus Rhizosphere | LGYEQGLSIAANALRLEYTLTNTLTVRAEAGAISGVGIYYRRSYD* |
Ga0066653_106414131 | 3300006791 | Soil | QGLSIASNALRLEYALTKTLTLRAEAGTVSGVGVYYRRTYN* |
Ga0075425_1013872241 | 3300006854 | Populus Rhizosphere | LMLVYEQGLTVAKNALRLEYALTRTVTLRAEAGVISSFGIYYRKVFD* |
Ga0066710_1034301871 | 3300009012 | Grasslands Soil | LSEHLTVAWEQGLTVATNALRIEYSLTQSLSVRAEAGTVSGLGLFYRKSF |
Ga0105243_101170187 | 3300009148 | Miscanthus Rhizosphere | LTDRLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD* |
Ga0075423_112463981 | 3300009162 | Populus Rhizosphere | GLSIAANALRLEYALTNTLTVRAEAGAVSGIGLYYRRTYN* |
Ga0105100_102349352 | 3300009166 | Freshwater Sediment | LPEKLYLFAEQGRTVATNGLKLESALTRNSTLRAEAGVVSGFGIYYRRSFE* |
Ga0115028_120219982 | 3300009179 | Wetland | NALRLEYSLTRTLTLRAEAGVISGFGIYYRRTFE* |
Ga0105237_110915862 | 3300009545 | Corn Rhizosphere | SLVYEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD* |
Ga0105249_114977703 | 3300009553 | Switchgrass Rhizosphere | INDKLTLVYEQGLTVAKNALRLEYSLTRTLTLRAEAGVVSSFGIYYRRVFD* |
Ga0134124_122135921 | 3300010397 | Terrestrial Soil | TVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD* |
Ga0126383_118193883 | 3300010398 | Tropical Forest Soil | GLTVATNALRVEYALSNTLSVRAEAGTVSGVGLYYRRNFE* |
Ga0136623_105160993 | 3300012045 | Polar Desert Sand | LSLIYEQGLSLASNALRIEYALTRTLTLRAEAGTVSGIGIFYRRTYD* |
Ga0137376_104325123 | 3300012208 | Vadose Zone Soil | AANALRLEYALTNTLTLRAEAGAVSGIGVYYRRAFD* |
Ga0157374_115033481 | 3300013296 | Miscanthus Rhizosphere | LTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD* |
Ga0157378_113988241 | 3300013297 | Miscanthus Rhizosphere | LVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD* |
Ga0075339_11161532 | 3300014316 | Natural And Restored Wetlands | VATNALRLEYELTRSLRLRAEAGTVSGLGIYFRRSFD* |
Ga0182008_109892342 | 3300014497 | Rhizosphere | ASGALRLEYALTRTLTLRAEAGTVSALGLIYRRSFE* |
Ga0182019_107636882 | 3300014498 | Fen | TVATNALRIEYTLSRTLTLRAEAGVVSSVGLYFRRTYD* |
Ga0157379_116870661 | 3300014968 | Switchgrass Rhizosphere | NALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD* |
Ga0157376_119321152 | 3300014969 | Miscanthus Rhizosphere | YEQGLTIATNALRIEYALSSTLTVRAEAGTVSGVGLVYRRSFD* |
Ga0132258_104222494 | 3300015371 | Arabidopsis Rhizosphere | LTVAYEQGLTVATNALRIEYALSSTLSVRAEAGTVSGLGLVYRRNFE* |
Ga0132255_1049172841 | 3300015374 | Arabidopsis Rhizosphere | LSENLTVAWEQGLTVATNALRIEYSLTTSLSVRAEAGTVSGLGLFYRKSFE* |
Ga0184605_101449981 | 3300018027 | Groundwater Sediment | QGLSIAANALRLEYALTNTLTLRAEAGMVSGVGVYYRRAFD |
Ga0193735_11655741 | 3300020006 | Soil | KLMLVYEQGLTVATNALRLEYSLSRTLTLRAEGGAISGFGIYYRRVFD |
Ga0207697_104205531 | 3300025315 | Corn, Switchgrass And Miscanthus Rhizosphere | ATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD |
Ga0209483_10290301 | 3300025862 | Arctic Peat Soil | LSNRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD |
Ga0209483_11219202 | 3300025862 | Arctic Peat Soil | SRLTLVYEQGLTVATNALRLEYALTRTLTLRVEAGTVSGLGIFFRRSYD |
Ga0207688_107352661 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | GLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD |
Ga0207693_112483201 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VYEQGLTIATNALRIEYTLTRTITLRAEAGTVASVGIYYRKTFD |
Ga0207662_111160713 | 3300025918 | Switchgrass Rhizosphere | LTLATQALRLEYELTRSLTVRAEAGTYGAIGLYFRRTFD |
Ga0207662_113182391 | 3300025918 | Switchgrass Rhizosphere | YEQGLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD |
Ga0207681_105915711 | 3300025923 | Switchgrass Rhizosphere | YQQGLSIATNALRIEYALSNTLTLRAEAGTISGLGIFYRRSFE |
Ga0207650_105617562 | 3300025925 | Switchgrass Rhizosphere | GLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE |
Ga0207686_104029752 | 3300025934 | Miscanthus Rhizosphere | TNTLRIEYALTRTVTLRAEAGTVGSVGVFYRRSFD |
Ga0207670_103084121 | 3300025936 | Switchgrass Rhizosphere | GLTVATNALRLEYALSRTLTLRAEAGTTSSLGVYFRRSYD |
Ga0207704_118503871 | 3300025938 | Miscanthus Rhizosphere | LVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD |
Ga0207711_120908282 | 3300025941 | Switchgrass Rhizosphere | RLTLVYEQGLTVATQALRLEYELTRSLTIRAEAGTYGALGIYFRRTFD |
Ga0207689_103730443 | 3300025942 | Miscanthus Rhizosphere | SLVYEQGLTIATNALRLEYELTRSLTLRAEAGTVGGLGIYFRRTFD |
Ga0207679_100148667 | 3300025945 | Corn Rhizosphere | SGALRLEYALTRTLTLRAEAGTVSALGLFYRRSFE |
Ga0207651_112918222 | 3300025960 | Switchgrass Rhizosphere | QGLTAASNALRIEYTLTRTLTLRAEAGVVSSLGLYFRRTFD |
Ga0207640_108590451 | 3300025981 | Corn Rhizosphere | LVYEQGLTVAKNALRLEYALTRTLTLRAEAGVVSSFGIYYRKVFD |
Ga0207658_106891431 | 3300025986 | Switchgrass Rhizosphere | EQGLSLAQNALRIEYALSRTLTLRAEAGAVASFGLYYRRSYD |
Ga0207658_106977271 | 3300025986 | Switchgrass Rhizosphere | FASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE |
Ga0207703_101774071 | 3300026035 | Switchgrass Rhizosphere | KRISDRLTLVYEQGLSLATNALRIEYALSRTLTLRAEAGAIASFGLYYRRSYD |
Ga0207641_113805653 | 3300026088 | Switchgrass Rhizosphere | ERLSLVYEQGLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD |
Ga0207648_109259802 | 3300026089 | Miscanthus Rhizosphere | EQGLSFASGALRLEYALTRTVTLRAEAGTVSAIGLYFRRSFE |
Ga0207648_113749773 | 3300026089 | Miscanthus Rhizosphere | GLTIATNALRLEYELTRSITLRAEAGTVGAVGLYFRRTFD |
Ga0207674_123036471 | 3300026116 | Corn Rhizosphere | GYEQGLSLAANALRLEYALTSTLTLRAEAGTVSGVGVYYRRTYN |
Ga0209797_101512481 | 3300027831 | Wetland Sediment | DRLSLVYEQGLSLANNTLRLEYELTRSLRLRAEAGTISGVGLYFGRSFD |
Ga0302166_100545331 | 3300028652 | Fen | TVANNALRIEYALTRSLTLRAEAGIISSLGLYFRRSYD |
Ga0302294_102041681 | 3300028740 | Fen | EQGLTVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD |
Ga0302263_100230764 | 3300028869 | Fen | TLVYEQGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE |
Ga0311334_117017111 | 3300029987 | Fen | LSESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE |
Ga0302172_101181832 | 3300030003 | Fen | RMTLVYEQGLTVATNALRIEYTLSRTLTLRAEAGVVSSLGLFFRRTYD |
Ga0311349_100189031 | 3300030294 | Fen | TVANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD |
Ga0311349_113391172 | 3300030294 | Fen | SETLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE |
Ga0311349_116129402 | 3300030294 | Fen | TDRLTLVYEQGLTVATNALRLEYSLTRAITLRAEAGTISSVGVYYRRNFD |
Ga0311360_107175351 | 3300030339 | Bog | ANNALRIEYALTRSLTLRAEAGIVSSLGLYFRRSYD |
Ga0311360_108333841 | 3300030339 | Bog | QGLTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE |
Ga0170824_1227002481 | 3300031231 | Forest Soil | LVYAQGLTVATNALRIEYALTRTLTLRAEAGVVGSFGIYYRRSFD |
Ga0311364_124159551 | 3300031521 | Fen | WEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE |
Ga0302321_1000315315 | 3300031726 | Fen | LTVANNALRIEYALTRSLTLRAEAGIISSLGLYYRRSYE |
Ga0302321_1014462303 | 3300031726 | Fen | SESLTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE |
Ga0302321_1024839521 | 3300031726 | Fen | LTVAWEQGLTVATNALRVEYSLSNSLSVRAEAGTVSGVGLYYRRSFE |
Ga0315899_117264082 | 3300031784 | Freshwater | EQGLTVATNALRLEYELTRSLTLRAEAGTISGVGIYFRRSFD |
Ga0315297_108350612 | 3300031873 | Sediment | EQGLTVATNALRLEYSLSRTLTLRAEAGAISGFGIYYRRTFE |
Ga0310900_103419451 | 3300031908 | Soil | TNALRLEYALTRTWTLRAEAGTVSGFGIYYRRAFD |
Ga0311367_111003793 | 3300031918 | Fen | TVANNALRIEYALTKSLTLRAEAGIISSLGLYFRRSYD |
Ga0310901_102230072 | 3300031940 | Soil | RLNLVYEQGLTAATNALRVEYALTRTLTLRAEAGVVSSLGMYFRRTFD |
Ga0307409_1024102221 | 3300031995 | Rhizosphere | DRLSLVYEQGLTAATNALRIEYALTRTLTLRAEAGVISSVGLYFRRTFD |
Ga0308176_102259263 | 3300031996 | Soil | TIGYEQGLALASSAVRIEYALTRTLTLRAEAGAASSLSLVYRRLFQ |
Ga0307416_1024328602 | 3300032002 | Rhizosphere | ATNALRIEYTLTRTLTLRAEAGVVSSVGLYFRRTFD |
Ga0318524_104098932 | 3300032067 | Soil | QGLTVAKNALRLDYALTRTLTLRAEGGAISSVGIFYRRVFD |
Ga0315277_108971661 | 3300032118 | Sediment | DNLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE |
Ga0315281_111540093 | 3300032163 | Sediment | ATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTLE |
Ga0315283_106823101 | 3300032164 | Sediment | ATNALRLEYDLTRSLTRRAEAGTVGGVGLYFRRSFD |
Ga0307471_1011892843 | 3300032180 | Hardwood Forest Soil | VYEQGLTVANNALRIEYALTRTLTLRAEAGIISSLGVYFRRSYD |
Ga0315270_107300881 | 3300032275 | Sediment | DRLTIVYEQGLTIANNALRLEYTLSRTLTLRAETGVVSGVGVYYRHAFE |
Ga0315286_108793152 | 3300032342 | Sediment | QGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE |
Ga0315287_113095031 | 3300032397 | Sediment | TDRLSLVYEQGLTVATNALRLEYSLSRTLTLRAEAGVISGFGIYYRRTFE |
Ga0315273_112825763 | 3300032516 | Sediment | LANNTLRLEYELTRSLRLRAEAGAISGIGIFFRRSFD |
Ga0315273_115101692 | 3300032516 | Sediment | DRLSLVYEQGLTVATNALRLEYDLTRSLMLRAEAGTVGGIGLYFRRSFD |
Ga0316619_104255302 | 3300033414 | Soil | RLTERLSLVYEQGLTVATNGLRIEYALSRTMTLRAEAGTVSGVGIYYRRTMR |
Ga0247829_101356962 | 3300033550 | Soil | RLTLVYEQGLTVATNALRIEYALSRTLTLRAEAGVVSSVGLFFRRSFD |
Ga0364927_0086580_738_857 | 3300034148 | Sediment | LSVANNALRIEYALTRTLTVRAEAGVVSSLGLYFRRTYD |
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