Metagenome / Metatranscriptome Family F097336

Overview

Basic Information

• Family ID: F097336
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 53 residues
• Representative Sequence: MEPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE
• Number of Associated Samples: 57
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 17.48 %
• % of genes near scaffold ends (potentially truncated): 23.08 %
• % of genes from short scaffolds (< 2000 bps): 79.81 %
• Associated GOLD sequencing projects: 55
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (48.077 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (21.154 % of family members)
• Environment Ontology (ENVO): Unclassified (47.115 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (59.615 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 49.38%
  β-sheet: 0.00%
  Coil/Unstructured: 50.62%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01242	PTPS	46.15
PF02867	Ribonuc_red_lgC	9.62
PF06508	QueC	2.88
PF10504	DUF2452	1.92
PF00085	Thioredoxin	1.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	46.15
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	9.62
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	2.88
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	2.88
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	2.88
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.88
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	2.88
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	2.88
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.88
COG0780	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily	Translation, ribosomal structure and biogenesis [J]	2.88
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	2.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.23 %
Unclassified	root	N/A	30.77 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	48.08 %
Unclassified	root	N/A	30.77 %
Viruses	superkingdom	All Organisms → Viruses	21.15 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.08 %
Unclassified	root	N/A	30.77 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	13.46 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	13.46 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.73 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	13.46 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.73 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13.46 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.73 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	10.58 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.92 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.58 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.92 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.77 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.58 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.92 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003277|JGI25908J49247_10019840	All Organisms → cellular organisms → Bacteria	2009
3300003411|JGI25911J50253_10224769	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	511
3300006484|Ga0070744_10043977	All Organisms → cellular organisms → Bacteria	1312
3300006484|Ga0070744_10053507	All Organisms → cellular organisms → Bacteria	1182
3300006484|Ga0070744_10087188	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	904
3300006484|Ga0070744_10125386	All Organisms → cellular organisms → Bacteria	739
3300006484|Ga0070744_10133595	All Organisms → cellular organisms → Bacteria	713
3300006484|Ga0070744_10178554	All Organisms → cellular organisms → Bacteria	606
3300007559|Ga0102828_1019476	Not Available	1464
3300007974|Ga0105747_1050469	Not Available	1226
3300007974|Ga0105747_1220273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	629
3300008107|Ga0114340_1002272	Not Available	12414
3300008107|Ga0114340_1009879	Not Available	6851
3300008107|Ga0114340_1027896	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2608
3300008107|Ga0114340_1096748	Not Available	1187
3300008107|Ga0114340_1135595	Not Available	929
3300008110|Ga0114343_1043209	Not Available	1787
3300008113|Ga0114346_1215587	All Organisms → cellular organisms → Bacteria	751
3300008116|Ga0114350_1004078	Not Available	7917
3300008116|Ga0114350_1007950	Not Available	4965
3300008116|Ga0114350_1026864	All Organisms → cellular organisms → Bacteria	3809
3300008116|Ga0114350_1035763	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2897
3300008259|Ga0114841_1190604	Not Available	755
3300008266|Ga0114363_1054312	All Organisms → cellular organisms → Bacteria	1581
3300008267|Ga0114364_1127429	All Organisms → cellular organisms → Bacteria	744
3300008448|Ga0114876_1024775	All Organisms → cellular organisms → Bacteria	3035
3300008448|Ga0114876_1126542	All Organisms → cellular organisms → Bacteria	970
3300008448|Ga0114876_1178435	Not Available	742
3300008996|Ga0102831_1153168	All Organisms → cellular organisms → Bacteria	765
3300012006|Ga0119955_1134126	All Organisms → cellular organisms → Bacteria	665
3300012665|Ga0157210_1038171	All Organisms → cellular organisms → Bacteria	744
3300012666|Ga0157498_1016979	Not Available	1141
3300012780|Ga0138271_1344111	All Organisms → cellular organisms → Bacteria	894
(restricted) 3300013130|Ga0172363_10546730	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	737
3300013372|Ga0177922_10864135	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1101
3300013372|Ga0177922_11177350	All Organisms → cellular organisms → Bacteria	881
3300017716|Ga0181350_1044580	All Organisms → cellular organisms → Bacteria	1192
3300017723|Ga0181362_1105346	All Organisms → cellular organisms → Bacteria	558
3300017747|Ga0181352_1023920	All Organisms → cellular organisms → Bacteria	1879
3300017761|Ga0181356_1225167	All Organisms → cellular organisms → Bacteria	544
3300017761|Ga0181356_1230870	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534
3300017766|Ga0181343_1194471	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	557
3300017774|Ga0181358_1169118	Not Available	734
3300017774|Ga0181358_1201771	All Organisms → cellular organisms → Bacteria	650
3300017778|Ga0181349_1227783	All Organisms → Viruses	632
3300017778|Ga0181349_1316451	All Organisms → cellular organisms → Bacteria	502
3300017784|Ga0181348_1329555	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	503
3300017785|Ga0181355_1189238	Not Available	814
3300019784|Ga0181359_1043344	Not Available	1742
3300019784|Ga0181359_1064506	All Organisms → cellular organisms → Bacteria	1396
3300019784|Ga0181359_1104398	All Organisms → cellular organisms → Bacteria	1034
3300019784|Ga0181359_1115172	All Organisms → cellular organisms → Bacteria	969
3300019784|Ga0181359_1271264	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	503
3300020141|Ga0211732_1463935	All Organisms → cellular organisms → Bacteria	1198
3300020151|Ga0211736_10718719	All Organisms → cellular organisms → Bacteria	1286
3300020160|Ga0211733_10144016	All Organisms → cellular organisms → Bacteria	1099
3300020161|Ga0211726_10486977	All Organisms → cellular organisms → Bacteria	1062
3300020161|Ga0211726_10625976	Not Available	7132
3300020162|Ga0211735_10504375	Not Available	1232
3300020162|Ga0211735_11345897	All Organisms → cellular organisms → Bacteria	684
3300020172|Ga0211729_10436359	All Organisms → cellular organisms → Bacteria	591
3300020200|Ga0194121_10104786	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1796
3300020205|Ga0211731_10472302	All Organisms → cellular organisms → Bacteria	1424
3300021961|Ga0222714_10014649	Not Available	6419
3300021961|Ga0222714_10162063	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1329
3300021961|Ga0222714_10231625	Not Available	1047
3300021962|Ga0222713_10139492	Not Available	1687
3300021962|Ga0222713_10194279	Not Available	1363
3300021962|Ga0222713_10274968	Not Available	1085
3300021962|Ga0222713_10732848	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	560
3300021963|Ga0222712_10077400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2387
3300021963|Ga0222712_10107754	All Organisms → Viruses	1938
3300021963|Ga0222712_10209728	All Organisms → cellular organisms → Bacteria	1269
3300022407|Ga0181351_1107209	Not Available	1069
3300023174|Ga0214921_10174877	Not Available	1397
3300023179|Ga0214923_10052464	All Organisms → Viruses	3094
3300023179|Ga0214923_10249552	Not Available	1001
3300023184|Ga0214919_10113089	All Organisms → Viruses	2268
3300023184|Ga0214919_10337690	Not Available	1013
3300023184|Ga0214919_10405180	Not Available	882
3300024346|Ga0244775_10275988	All Organisms → cellular organisms → Bacteria	1397
3300024346|Ga0244775_10553612	All Organisms → cellular organisms → Bacteria	936
3300024346|Ga0244775_11269004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	571
3300024346|Ga0244775_11283536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	567
3300027631|Ga0208133_1082744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	755
3300027798|Ga0209353_10230083	All Organisms → cellular organisms → Bacteria	803
3300027798|Ga0209353_10328450	All Organisms → cellular organisms → Bacteria	643
3300031758|Ga0315907_10142188	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2037
3300031758|Ga0315907_10234149	All Organisms → cellular organisms → Bacteria	1528
3300031784|Ga0315899_10163405	All Organisms → Viruses	2264
3300031787|Ga0315900_10044069	Not Available	4788
3300031787|Ga0315900_10079332	All Organisms → Viruses	3292
3300031787|Ga0315900_10162545	Not Available	2043
3300031857|Ga0315909_10588709	All Organisms → Viruses	746
3300031857|Ga0315909_10698330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	659
3300031963|Ga0315901_10053412	All Organisms → Viruses	3942
3300031963|Ga0315901_10318816	All Organisms → cellular organisms → Bacteria	1280
3300031963|Ga0315901_10342742	All Organisms → cellular organisms → Bacteria	1220
3300032093|Ga0315902_10718447	Not Available	808
3300032093|Ga0315902_10879086	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	693
3300033993|Ga0334994_0540882	All Organisms → cellular organisms → Bacteria	533
3300033994|Ga0334996_0184714	All Organisms → cellular organisms → Bacteria	1128
3300034061|Ga0334987_0171286	Not Available	1563

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	75.00%
Marine	Environmental → Aquatic → Marine	25.00%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	40.38%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified	20.19%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	12.50%
Coastal	Environmental → Aquatic → Marine → Coastal	2.88%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	39.42%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	21.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	20.19%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.88%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	21.15%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	13.46%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	12.50%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.54%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	10.58%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	9.62%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.65%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	2.88%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.96%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.96%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental
3300008259	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA	Environmental
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental
3300012006	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B	Environmental
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental
3300012780	Freshwater microbial communities from Lake Croche, Canada - C_130625_M_mt (Metagenome Metatranscriptome)	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020200	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m	Environmental
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental
3300024346	Whole water sample coassembly	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25908J49247_100198405	3300003277	Freshwater Lake	MDPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE*
JGI25911J50253_102247692	3300003411	Freshwater Lake	MDPNKMHERVLEIQKNIAGVTPEQQTAMLGELLEIASKVEQSLSEIKLDTDEE*
Ga0070744_100439773	3300006484	Estuarine	MDPNKMHERVLEIQKNITGVTPEQQTAMLGELLEIASKVEQSLSEIKLEIDEE*
Ga0070744_100535072	3300006484	Estuarine	MEPNKIHERVLEIQKNMPEATPEQQTAMLGELFELVSKVEQSLSEIKIESDDEE*
Ga0070744_100871883	3300006484	Estuarine	MDPNKIHDRILEIQKNIPTASTEQQTDMLNELFELASKIEQSLSELKIETNEE*
Ga0070744_101253862	3300006484	Estuarine	MEPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE*
Ga0070744_101335952	3300006484	Estuarine	MEPNKIHERVLEIQKNISTLSSEQQTEMLSELLELASKLEQSLSEIKIEDNE*
Ga0070744_101785543	3300006484	Estuarine	MEPNKIHERVLEIQKNIPTLSPEQQTEMLSELLELASKLEQSLSEIKIE
Ga0102828_10194763	3300007559	Estuarine	MDPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNE*
Ga0105747_10504692	3300007974	Estuary Water	MEPNRIHERVLEIQKNMPEASPEQQTAMLGELFELVSKVEQSLSEIKIESDDEE*
Ga0105747_12202732	3300007974	Estuary Water	MEPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNE*
Ga0105747_13555191	3300007974	Estuary Water	MDPNKMHERVLEIQRNMETSTAEEQTSMLSELLEIASRIEQSLAEVKIDVDVDTIQIEEDEE*
Ga0114340_100227214	3300008107	Freshwater, Plankton	MEPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIDTDDEE*
Ga0114340_10098792	3300008107	Freshwater, Plankton	MEPNKMHERVLEIQKNITVATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE*
Ga0114340_10278966	3300008107	Freshwater, Plankton	MDPNKMHERVLEIQKNIQAASIEEQTTMLSELLEIASKVEQSLSEVKFDDETNNNDEE*
Ga0114340_10967483	3300008107	Freshwater, Plankton	METNKMHERVLEIQKNMSAATPEQQTAMLSELLEIASKVEQSLSEIKIDTDDEE*
Ga0114340_11355952	3300008107	Freshwater, Plankton	MKMEPNKIHERVLEIQSQIQSVSPEQQISMLNELLELASKVEQSLSEIKIETNED*
Ga0114343_10432093	3300008110	Freshwater, Plankton	MEPNKMHERVLEIQKNIAVATPEQQTEMLGELLEIASKVEQSLSEIKIDTDEE*
Ga0114346_12155873	3300008113	Freshwater, Plankton	QKNISVATPEQQTAMLGELLEIASKVEQSLSEIKIDTDDEE*
Ga0114350_10040783	3300008116	Freshwater, Plankton	MDPNKMHERVLEIQKNLQASSPEEQTAMLSELLEIASKVEQSLSEIKIEIDEE*
Ga0114350_10079504	3300008116	Freshwater, Plankton	MEPNKMHERVLEIQKNIVAATPEQQTEMLGELLEIASKVEQSLSEIKIDIDEE*
Ga0114350_10268642	3300008116	Freshwater, Plankton	MEPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIDIDDEE*
Ga0114350_10357633	3300008116	Freshwater, Plankton	MDPNKMHERVLEIQKNIQAASIEEQTTMLSELLEIASKVEQSLGHYIV*
Ga0114841_11906042	3300008259	Freshwater, Plankton	MEPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE*
Ga0114363_10543123	3300008266	Freshwater, Plankton	MDPNKMHERVLEIQKNMSAATPEEQTAMLSELLDLASKAEQALADVKLDNDEE*
Ga0114364_11274293	3300008267	Freshwater, Plankton	MDSNKIHERVIEIQKNIEIANPKEQAAMLSELLGIASRIE
Ga0114876_10247753	3300008448	Freshwater Lake	MDPNKMHERVLEIQKNIQVATPEEQTAMLSELLELASKAEQALSEVKLDADEE*
Ga0114876_11265422	3300008448	Freshwater Lake	MEPNKIHERVLEIQSQIQSVSPEQQISMLNELLELASKVEQSLSEIKIETNED*
Ga0114876_11784351	3300008448	Freshwater Lake	MDPNKMHERVLEIQKNISVATPEQQTAMLGELLEIASKVEQSLSEIKIDT
Ga0102831_11531682	3300008996	Estuarine	MEPNKIHERVLEIQKNISTLSPEQQTEMLSELLELASKLEQSLSEIKIEDNE*
Ga0119955_11341263	3300012006	Freshwater	KKYLNSCLIILTMDPNKIHDRILEIQKNIPTASTEQQTDMLNELFELASKIEQSLSELKIETNEE*
Ga0157210_10381713	3300012665	Freshwater	MDPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSDIKIDIDED*
Ga0157498_10169792	3300012666	Freshwater, Surface Ice	MEPNKIHERVLEIQKNISTLSPDQQTEMLSELLDLASKLEQSLSEIKIEDNEE*
Ga0138271_13441111	3300012780	Freshwater Lake	HERVLEIQSQIQNVSPEQQTAMLNELLNLASQIEQSLSELKIELDEE*
(restricted) Ga0172363_105467303	3300013130	Sediment	MDPNKMHERVLEIQKNIEGAEPEQQTKMLSELLDIASKIEQSLSELKIDVDIDNIEINEDEE*
Ga0177922_108641353	3300013372	Freshwater	MDPNKMHERVLEIQKNIIGVTPEQQTAMLGELLEIASKVEQSLSEIKIDTDEE*
Ga0177922_111773501	3300013372	Freshwater	IIILTMDPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE*
Ga0181350_10445802	3300017716	Freshwater Lake	MDPNKIHERVLEIQKNISTLSPEQQTEMLGELLELASKLEQSLSEIKIEDNEE
Ga0181362_11053461	3300017723	Freshwater Lake	QKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE
Ga0181352_10239203	3300017747	Freshwater Lake	MDPNKMHERVLEIQKNMSAASPEEQTAMLSELLDLASKAEQALADVKLDNDEE
Ga0181356_12251671	3300017761	Freshwater Lake	MHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEVKIDTDDEE
Ga0181356_12308701	3300017761	Freshwater Lake	MEPNKIHERVLEIQKNISTLSPEQQTEMLGELLDFASKLEQSLSEIKIEDNEE
Ga0181343_11944712	3300017766	Freshwater Lake	MDPNKMHERVLEIQRNMETSTAEEQTAMLSELLDLASKAEQALADVKLDNDEE
Ga0181358_11691182	3300017774	Freshwater Lake	MDPNRMHERVLEIQKNITGVTPEQQTAMLSELLELASKAEQALANVKLDNDEE
Ga0181358_12017711	3300017774	Freshwater Lake	MDPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEVKIDTDDEE
Ga0181349_12277832	3300017778	Freshwater Lake	MEPNKIHERVLEIQKNIATLSPDQQTEMLSELLDLASKLEQSLSEIKIEDNE
Ga0181349_13164513	3300017778	Freshwater Lake	MDPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKI
Ga0181348_13295551	3300017784	Freshwater Lake	NLLIIILTMEPNKIHERVLEIQKNIATLSPDQQTEMLSELLDLASKLEQSLSEIKIEDNE
Ga0181355_11892382	3300017785	Freshwater Lake	MEPNKIHERVLEIQKNISTLSPEQQTEMLSELLDLASKLEQSLSEIKIENNE
Ga0181359_10433442	3300019784	Freshwater Lake	MEPNKIHERVLEIQKNISTLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNE
Ga0181359_10645063	3300019784	Freshwater Lake	MDPNKIHERVLEIQKNISTLSPEQQTEMLGELLNLASKLEQSLSEIKIEDNEE
Ga0181359_11043982	3300019784	Freshwater Lake	MDPNKMHERVLEIQKNIAGVTPEQQTAMLGELLEIASKVEQSLSEIKLDTDEE
Ga0181359_11151723	3300019784	Freshwater Lake	MHERVLEIQKNMSAASPEEQTAMLSELLELASKAEQALADVKLDNDEE
Ga0181359_12712642	3300019784	Freshwater Lake	MEPNKIHERVLEIQKNISTLSPEQQTEMLSELLDLASKLEQSLSEIKIEDNE
Ga0211732_14639353	3300020141	Freshwater	MEPNKIHERVLEIQKTIPTLSPDQQTEMLSELIELASKLEQSLSEIKIEDNEE
Ga0211736_107187193	3300020151	Freshwater	MEPNKIHERVLEIQKNISNLPPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE
Ga0211733_101440161	3300020160	Freshwater	MEPSKIHERVLEIQKQIQNVTPEQQTEMLGELLDLASKLEQSLSEIKTENNE
Ga0211726_104869772	3300020161	Freshwater	MEPNKIHERVLEIQKNMPEASPEQQTAMLGELFELVSKVEQSLSEIKIESDDEE
Ga0211726_1062597615	3300020161	Freshwater	MDPNKMHERVLEIQKNISVSTPEQQTAMLGELLDIASKVEQSLSDIKIDIDED
Ga0211735_105043752	3300020162	Freshwater	MEPNKIHERVLEIQKNISTQSPDQQTEMLSELLELASKLEQSLSEIKIEDNE
Ga0211735_113458972	3300020162	Freshwater	MDPNKIHDRILEIQKNIPTASTEQQTDMLNELFELASKIEQSLSELKIETNE
Ga0211729_104363592	3300020172	Freshwater	MEPNKIHERVLEIQKNISNLSPEQQTEMLGELLDLASKLEQSLSEIKIEDNEE
Ga0194121_101047861	3300020200	Freshwater Lake	MYERVLEIQKNIEISSPEQQTQMMNELLNIVSKIEQSLSEIKIDIDEDQ
Ga0211731_104723024	3300020205	Freshwater	YQKKYLNSLIIILIMEPSKIHERVLEIQKQIQNVTPEQQTEMLGELLDLASKLEQSLSEIKTENNE
Ga0222714_100146499	3300021961	Estuarine Water	MDPNKMHERVLEIQKNMSAATPEEQTAMLSELLDLASKAEQALADVKLDNDEE
Ga0222714_101620631	3300021961	Estuarine Water	MEPNKMHERVLEIQKNMSAATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE
Ga0222714_102316252	3300021961	Estuarine Water	MDPNKMHERVLEIQKNIQVATPEEQTAMLSELLELASKAEQALSEVKLDADEE
Ga0222713_101394922	3300021962	Estuarine Water	MHERVLEIQKNISVATPEQQTAMLGELLEIASKVEQSLSEIKIDTDDEE
Ga0222713_101942793	3300021962	Estuarine Water	MDPNKIHERVIEIQKNIELANPEEQTAMLSELLGIASRIEQSLAE
Ga0222713_102749682	3300021962	Estuarine Water	MHERVLEIQKNIQASTPEQQTAMLSELLELASKAEQALSEIKIELDEE
Ga0222713_107328481	3300021962	Estuarine Water	MHERVLEIQKNMSAATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE
Ga0222712_100774002	3300021963	Estuarine Water	MSDPNKMHERVLEIQKNIQVVTPEEQSSMLSELLEIASKIEQSLAEIKIDTDEE
Ga0222712_101077546	3300021963	Estuarine Water	MDPNKMHERVLEIQKNIQASTPEQQTAMLSELLELASKAEQALSEIKIELDEE
Ga0222712_102097282	3300021963	Estuarine Water	MDPNKMHERVLEIQKNISVATPEQQTAMLGELLEIASKVEQSLSEIKIDTDDEE
Ga0181351_11072093	3300022407	Freshwater Lake	MEPNKIHERVLEIQKNIATLSPDQQTEMLSELLDLASKLEQSLSEIKIEDNEE
Ga0214921_101748772	3300023174	Freshwater	MEPNKIHERVLEIKNNIQNVSSEKQTEMLSELLELASKLEQSLSEIKIEKNEEAVHHSEG
Ga0214923_100524643	3300023179	Freshwater	MEPNKIHERVLEIQKNIPTLSPEQQTEMLSELLDLASKLEQSLSEIKIEDNE
Ga0214923_102495521	3300023179	Freshwater	LEIKNNIQNVSSEKQTEMLSELLELASKLEQSLSEIKIEKNEEAVHHSEG
Ga0214919_101130893	3300023184	Freshwater	MEPNKIHERVLEIQKNISTLSPDQQTEMLSELLDLASKLEQSLSEIKIEDNEE
Ga0214919_103376903	3300023184	Freshwater	TLKMEPNKIHERVLEIKNNIQNVSSEKQTEMLSELLELASKLEQSLSEIKIEKNEEAVHHSEG
Ga0214919_104051803	3300023184	Freshwater	MEPNKIHERVLEIQNQIQNVSPEQQTEMLNELLDLASQIEQSLSEIKIDTDEE
Ga0244775_102759882	3300024346	Estuarine	MEPNKIHERVLEIQKNMPEATPEQQTAMLGELFELVSKVEQSLSEIKIESDDEE
Ga0244775_105536123	3300024346	Estuarine	MEPNKIHERVLEIQKNISTLSSEQQTEMLSELLELASKLEQSLSEIKIEDNE
Ga0244775_112690041	3300024346	Estuarine	MDPNKMHERVLEIQKNIAGVTPEQQTEMLGELLEIASKVEQSLSEIKLEIDEE
Ga0244775_112835362	3300024346	Estuarine	MDPNKIHDRILEIQKNIPTASTEQQTDMLNELFELASKIEQSLSELKIETNEE
Ga0208133_10827442	3300027631	Estuarine	MDPNKMHERVLEIQKNITGVTPEQQTAMLGELLEIASKVEQSLSEIKLEIDEE
Ga0209353_102300833	3300027798	Freshwater Lake	HERVLEIQKNMPEASPEQQTAMLGELFELVSKVEQSLSEIKIESDDEE
Ga0209353_103284502	3300027798	Freshwater Lake	IMEPNKIHERVLEIQKNISTLSPEQQTEMLGELLELASKLEQSLSEIKIENNE
Ga0315907_101421882	3300031758	Freshwater	MEPNKMHERVLEIQKNIVAATPEQQTEMLGELLEIASKVEQSLSEIKIDIDEE
Ga0315907_102341494	3300031758	Freshwater	MDPNKMHERVLEIQKNIQAASIEEQTTMLSELLEIASKVEQSLSEVKFDDETNNNDEE
Ga0315899_101634051	3300031784	Freshwater	MHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIDIDDEE
Ga0315900_1004406910	3300031787	Freshwater	YLNSRIIILTMEPNKMHERVLEIQKNISVATPEQQTAMLSELLEIASKVEQSLSEIKIDTDDEE
Ga0315900_100793324	3300031787	Freshwater	MHERVLEIQKNITVATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE
Ga0315900_101625452	3300031787	Freshwater	MHERVLEIQKNIVAATPEQQTEMLGELLEIASKVEQSLSEIKIDIDEE
Ga0315909_105887092	3300031857	Freshwater	MHERVLEIQKNMSAATPEEQTAMLSELLDLASKAEQALADVKLDNDEE
Ga0315909_106983301	3300031857	Freshwater	MEPNKMHERVLEIQKNISVATPEQQTAMLGELLEIASKVEQSLSEIKIDTDDEE
Ga0315901_100534123	3300031963	Freshwater	MEPNKMHERVLEIQKNITVATPEQQTAMLSELLEIASKVEQSLSEIKIEIDEE
Ga0315901_103188165	3300031963	Freshwater	IIILTMEPNKMHERVLEIQKNMSAATPEQQTAMLSELLEIASKVEQSLSEIKIEIDDEE
Ga0315901_103427425	3300031963	Freshwater	MDPNKMHERVLEIQKNLQASSPEEQTAMLSELLEIASKVEQSLSEIKIEIDEE
Ga0315902_107184471	3300032093	Freshwater	MHERVLEIQKNIETSNPEEQTKMLSELLDIASRIEQSLADIKIDVDVDNIE
Ga0315902_108790862	3300032093	Freshwater	MEPNKMHERVLEIQKNMSAATPEQQTAMLSELLEIASKVEQSLSEIKIEIDDEE
Ga0334994_0540882_5_139	3300033993	Freshwater	VLEIQKNISVATPEQQTAMLGELLELASKAEQALSDIKIDIDEE
Ga0334996_0184714_783_947	3300033994	Freshwater	MEPNKMHERVLEIQKNISVATPEQQTAMLGELLEIASKVEQSLSEVKIDIDDEE
Ga0334987_0171286_676_864	3300034061	Freshwater	MDPNKMHERVLEIQRNMETANAEEQTSMLSELLEIASKIEQSLAEVKIDVDIDNIEIEENEE