NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097239

Metagenome / Metatranscriptome Family F097239

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097239
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 48 residues
Representative Sequence MDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVIAGFRIP
Number of Associated Samples 86
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 71.43 %
% of genes near scaffold ends (potentially truncated) 0.96 %
% of genes from short scaffolds (< 2000 bps) 3.85 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.154 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(16.346 % of family members)
Environment Ontology (ENVO) Unclassified
(58.654 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.808 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1LP_A_09_P04_10DRAFT_10039361
2JGI20151J14362_101029641
3JGI20151J14362_101449771
4JGI20156J14371_101037093
5JGI20160J14292_101084993
6JGI20155J14468_102285591
7JGI20155J14468_102291761
8JGI20158J14315_101532881
9GOS2219_10056405
10JGI26079J46598_10297463
11JGI26088J50261_10278702
12JGI26084J50262_10537551
13JGI26273J51734_100753952
14JGI26273J51734_101166382
15JGI26085J52751_10585762
16Ga0055584_1008100762
17Ga0078893_106100253
18Ga0075109_12299931
19Ga0075117_11048563
20Ga0075119_10393983
21Ga0075478_100559842
22Ga0075462_100286813
23Ga0075461_101091521
24Ga0098055_12055251
25Ga0075463_100230713
26Ga0102853_10011385
27Ga0102855_10376752
28Ga0102951_11900121
29Ga0102954_10208201
30Ga0105738_10742061
31Ga0105741_10411343
32Ga0102960_10371701
33Ga0102960_11198602
34Ga0102960_13316512
35Ga0102963_11208252
36Ga0102854_10892251
37Ga0102854_11408531
38Ga0115552_11851821
39Ga0118687_100190493
40Ga0118687_103076222
41Ga0114995_100272342
42Ga0114994_100708831
43Ga0115556_11470103
44Ga0115556_11473083
45Ga0115007_108364232
46Ga0115553_10240834
47Ga0115558_10123311
48Ga0115572_101818361
49Ga0115003_100456362
50Ga0115003_101460501
51Ga0115004_103421831
52Ga0115000_102621791
53Ga0115000_108727051
54Ga0136549_100725843
55Ga0136549_102934433
56Ga0181414_11844411
57Ga0181422_10076995
58Ga0181565_101650533
59Ga0206124_100470063
60Ga0210296_10232581
61Ga0213862_101655081
62Ga0206123_104713621
63Ga0213863_1000014176
64Ga0213866_100250532
65Ga0222717_100488311
66Ga0222718_100714733
67Ga0222718_102523191
68Ga0222716_100594855
69Ga0222716_103338731
70Ga0222715_102301331
71Ga0222719_100582881
72Ga0222719_106113431
73Ga0222673_10111982
74Ga0222711_10150353
75Ga0222661_10033751
76Ga0233438_102511741
77Ga0244776_1000168132
78Ga0209654_10360261
79Ga0208004_10172952
80Ga0209136_10466381
81Ga0209136_11691421
82Ga0209601_10075907
83Ga0209653_10998921
84Ga0208425_10181793
85Ga0209714_10864173
86Ga0209666_10153685
87Ga0209223_103560251
88Ga0209631_103428291
89Ga0209631_104429482
90Ga0209335_102664602
91Ga0209425_104531632
92Ga0209961_10679831
93Ga0209929_10989611
94Ga0208023_10470113
95Ga0209710_11406762
96Ga0209192_100166042
97Ga0209711_103386912
98Ga0209830_104736121
99Ga0209091_100685561
100Ga0209091_101657373
101Ga0209091_102402902
102Ga0257114_11985761
103Ga0302122_102225183
104Ga0316202_100504453
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 60.78%    β-sheet: 0.00%    Coil/Unstructured: 39.22%
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Variant

5101520253035404550MDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVIAGFRIPCytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
3.8%96.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Marine
Marine
Marine
Seawater
Microbial Mat
Aqueous
Seawater
Marine Surface Water
Estuary Water
Marine
Estuarine
Salt Marsh
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Seawater
Saline Lake
Saline Water
Pond Water
Water
Sediment
Marine Methane Seep Sediment
16.3%5.8%2.9%11.5%6.7%7.7%7.7%12.5%2.9%2.9%4.8%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_A_09_P04_10DRAFT_100393613300000265MarineMDIRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
JGI20151J14362_1010296413300001346Pelagic MarineMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20151J14362_1014497713300001346Pelagic MarineVYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
JGI20156J14371_1010370933300001347Pelagic MarineVYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTA
JGI20160J14292_1010849933300001349Pelagic MarineMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20155J14468_1022855913300001354Pelagic MarineMDVRLESFMRTLGGFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20155J14468_1022917613300001354Pelagic MarineMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAV
JGI20158J14315_1015328813300001355Pelagic MarineLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
GOS2219_100564053300001941MarineMDVRLESFMRIVGLFLTVFFAIRWGAKSPVNDELIITLVAITAVIAGFRVP*
JGI26079J46598_102974633300003216MarineMDIRLEAMLRTISVFLSIFFTIRWSAKSPINDELWMTITAIAAVIAGFRIP*
JGI26088J50261_102787023300003409MarineMDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTIVSITAVIAGFRIP*
JGI26084J50262_105375513300003427MarineMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK*
JGI26273J51734_1007539523300003620MarineMDVRLESFMRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFRVP*
JGI26273J51734_1011663823300003620MarineMDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
JGI26085J52751_105857623300003908MarineMDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP*
Ga0055584_10081007623300004097Pelagic MarineMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0078893_1061002533300005837Marine Surface WaterMDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAISAVIAGFRIP*
Ga0075109_122999313300005912Saline LakeMDLRLESTLRTLGVFLAIFFTVRWGKESPINDELWMVVASISAVIAGFRVP*
Ga0075117_110485633300005914Saline LakeMDVRLESTLRVVSVFLAIFFTVRWGKESPINDELWITIASIFAVIAGFRIP*
Ga0075119_103939833300005931Saline LakeMDIRLESTLRVISVFLAIFFTVRWGRESPINDELWITVASILGVILGFRIP*
Ga0075478_1005598423300006026AqueousMDVRLESTLRTISVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK*
Ga0075462_1002868133300006027AqueousMDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP*
Ga0075461_1010915213300006637AqueousMDVRLESTLRTISVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRKSDRMFK
Ga0098055_120552513300006793MarineMDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAISAVIAGFRI
Ga0075463_1002307133300007236AqueousVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP*
Ga0102853_100113853300007543EstuarineMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0102855_103767523300007647EstuarineRLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0102951_119001213300007725WaterMDIRLESFLRTLGVFLTIFFTVRWGRDSPINDELWMVVASISAVIAGFRIP*
Ga0102954_102082013300007778WaterMDVRLESTLRTIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK*
Ga0105738_107420613300007953Estuary WaterMDIRLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0105741_104113433300007956Estuary WaterMRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFR
Ga0102960_103717013300009000Pond WaterMNITKMDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK*
Ga0102960_111986023300009000Pond WaterMDVRLESALRTISVFLTVFFTIRWGAKSPIQDELLMTVVAIIAVIAGFRIP*
Ga0102960_133165123300009000Pond WaterMDIRLEAMLRIISVFLSIFFTIRWSAKSPINDELWMTVVAISAVIAGFRIP*
Ga0102963_112082523300009001Pond WaterMDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTVVAILAVIAGFRIK*
Ga0102854_108922513300009058EstuarineMRTLGLFLTVFFTIRWGAKSPINDELWMTLTAIAAV
Ga0102854_114085313300009058EstuarineMYITKMDVRLESFMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIA
Ga0115552_118518213300009077Pelagic MarineMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAG
Ga0118687_1001904933300009124SedimentMDVRLESFLRTLGVFLSVFFTIQWGRNSPIDDELWMTLTAIAAVIAGFRIP*
Ga0118687_1030762223300009124SedimentMDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVT
Ga0114995_1002723423300009172MarineMDIRLESTLRTLGAFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0114994_1007088313300009420MarineMDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRIP*
Ga0115556_114701033300009437Pelagic MarineMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0115556_114730833300009437Pelagic MarineMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0115007_1083642323300009441MarineMDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP*
Ga0115553_102408343300009445Pelagic MarineVYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0115558_101233113300009449Pelagic MarineMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP*
Ga0115572_1018183613300009507Pelagic MarineMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFR
Ga0115003_1004563623300009512MarineMDLRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRVP*
Ga0115003_1014605013300009512MarineMDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISA
Ga0115004_1034218313300009526MarineMDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVAS
Ga0115000_1026217913300009705MarineMDIRLESTLKTIGVFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0115000_1087270513300009705MarineFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP*
Ga0136549_1007258433300010389Marine Methane Seep SedimentMDVRLESFLRTLGVFLSVFFTIQWGRDSPIDDELWMTLTAIAAVIAGFRIP*
Ga0136549_1029344333300010389Marine Methane Seep SedimentMDVRLESFLRTLGVFLSVFFTIQWGRDSPINDELWMTLTAIAAV
Ga0181414_118444113300017759SeawaterMDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP
Ga0181422_100769953300017762SeawaterMDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTITAITAVIAGFRIP
Ga0181565_1016505333300017818Salt MarshMDVRLESFLRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVIAGFRIP
Ga0206124_1004700633300020175SeawaterMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0210296_102325813300021305EstuarineMYNTKMDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0213862_1016550813300021347SeawaterMDVRLESTLRTIGVFLTVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK
Ga0206123_1047136213300021365SeawaterLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTA
Ga0213863_10000141763300021371SeawaterMDIRLEAMLRTIGVFLTIFFTIRWSAKSPINDELWMTVTAICAVIAGFRIP
Ga0213866_1002505323300021425SeawaterMDVRLESFLRTLGVFLSVFFTMRWGRDSPIQDELWMTLTAIAAVIAGLRVP
Ga0222717_1004883113300021957Estuarine WaterMDVRLESFLRTLGVFLSVFFTIQWGRDSPINDELWMTLTAIAAVIAGFRIP
Ga0222718_1007147333300021958Estuarine WaterMDIRLEAMLRIISVFLSIFFTIRWSAKSPINDELWMTVVAISAVIAGFRIP
Ga0222718_1025231913300021958Estuarine WaterMDIRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0222716_1005948553300021959Estuarine WaterMDVRLESFLRTLGVFLNVFFTIRWGAKSPINDELWMTLTAIAAVITGFRIP
Ga0222716_1033387313300021959Estuarine WaterMDVRLESFMRTLALFLTVFFTIRWGAKSPINDELMMTLTAIVAVIAAFRVP
Ga0222715_1023013313300021960Estuarine WaterMDVRLESFMRSLGVFLTVFFTIRWGANSPINDELWMTLTAIAAVLAGFRVP
Ga0222719_1005828813300021964Estuarine WaterMDVRLESFLRTLGVFLSVFFTIQWGRDSPINDEMWMTLTAIAAVIAGFRIP
Ga0222719_1061134313300021964Estuarine WaterMNITKMDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRIK
Ga0222673_101119823300022821Saline WaterMDIRLESTLRVISVFLAIFFTVRWGRESPINDELWITVASILGVILGFRIP
Ga0222711_101503533300022837Saline WaterMDVRLESTLRVVSVFLAIFFTVRWGKESPINDELWITIASIFAVIAGFRIP
Ga0222661_100337513300023229Saline WaterMDVRLESFMRTLALFLTVFFTIRWGAKSPINDELWMTLTAITAVIAAFRIP
(restricted) Ga0233438_1025117413300024255SeawaterMDVRLESFMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0244776_10001681323300024348EstuarineMRSLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209654_103602613300025608MarineMDIRLEAMLRTIGVFLSIFFTIRWSAKSPINDELWMTIVSITAVIAGFRIP
Ga0208004_101729523300025630AqueousMDIRLESFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP
Ga0209136_104663813300025636MarineMDIRLEAMLRTISVFLSIFFTIRWSAKSPINDELWMTITAIAAVIAGFRIP
Ga0209136_116914213300025636MarineFLRTLSVFLSIFFTVRWGAKSPIQDELWMTVTAIVAVIAGFRVP
Ga0209601_100759073300025666Pelagic MarineVYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209653_109989213300025695MarineMDVRLESTLRMIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK
Ga0208425_101817933300025803AqueousVFLSIFFTVRWGAKSPIQDELWMTVTAIIAVIAGFRIP
Ga0209714_108641733300025822Pelagic MarineMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
Ga0209666_101536853300025870MarineMRTLGVFLSVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209223_1035602513300025876Pelagic MarineVYNTKMDVRLESFMRSLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209631_1034282913300025890Pelagic MarineLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209631_1044294823300025890Pelagic MarineMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAA
Ga0209335_1026646023300025894Pelagic MarineTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209425_1045316323300025897Pelagic MarineFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP
Ga0209961_106798313300026130WaterMDVRLESTLRTIGVFLSVFFTIRWGAKSPIQDELWMTVVAILAVIAGFRVK
Ga0209929_109896113300026187Pond WaterKMDVRLESALRTISVFLTVFFTIRWGAKSPIQDELLMTVVAIIAVIAGFRIP
Ga0208023_104701133300027206EstuarineMDVRLESFMRTLGLFLTVFFTIRWGAKSPINDELIMTLTAISAVIA
Ga0209710_114067623300027687MarineMDIRLESTLRTLGAFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0209192_1001660423300027752MarineMDLRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRVP
Ga0209711_1033869123300027788MarineMDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP
Ga0209830_1047361213300027791MarineKMDLRLESTLRTLGVFLTIFFTVRWGRESPINDELWMVVASISAVIAGFRVP
Ga0209091_1006855613300027801MarineMDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWMVVASISAVIAGFRIP
Ga0209091_1016573733300027801MarineMDIRLESTLKTIGVFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0209091_1024029023300027801MarineFLTIFFTVRWGRESPINDELWMVVTSIVAVILGFRVP
Ga0257114_119857613300028196MarineLESFMRTLGLFLTVFFTIRWGAKSPVNDELIMTLVAITAVIAGFRVP
Ga0302122_1022251833300031675MarineMDVRLESTLRTLGVFLTIFFTVRWGKESPINDELWM
Ga0316202_1005044533300032277Microbial MatMYNTKMDVRLESFMRTLGVFLTVFFTIRWGAKSPINDELWMTLTAIAAVLAGFRVP


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