Metagenome / Metatranscriptome Family F097074

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097074
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	65 residues
Representative Sequence	MATLIALAAIALFIAGAATGIIGVVCVAIRREDKKLTLTSQATDNVTRAGRWLNGVHVRA
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.11 %
% of genes near scaffold ends (potentially truncated)	21.15 %
% of genes from short scaffolds (< 2000 bps)	82.69 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.808 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.615 % of family members)
Environment Ontology (ENVO)	Unclassified (32.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.077 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.36% β-sheet: 0.00% Coil/Unstructured: 38.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00571	CBS	3.85
PF03704	BTAD	3.85
PF00106	adh_short	3.85
PF12680	SnoaL_2	2.88
PF04542	Sigma70_r2	2.88
PF01527	HTH_Tnp_1	2.88
PF06224	HTH_42	1.92
PF13545	HTH_Crp_2	1.92
PF00486	Trans_reg_C	1.92
PF08530	PepX_C	0.96
PF12697	Abhydrolase_6	0.96
PF00291	PALP	0.96
PF08241	Methyltransf_11	0.96
PF13424	TPR_12	0.96
PF01939	NucS	0.96
PF01348	Intron_maturas2	0.96
PF00144	Beta-lactamase	0.96
PF00211	Guanylate_cyc	0.96
PF04075	F420H2_quin_red	0.96
PF13276	HTH_21	0.96
PF13345	Obsolete Pfam Family	0.96
PF00293	NUDIX	0.96
PF00196	GerE	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	3.85
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	3.85
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.88
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	1.92
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.96
COG2936	Predicted acyl esterase	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
All Organisms	root	All Organisms	45.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
cellular organisms	root	All Organisms → cellular organisms	45.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.38 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.04 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.92 %
Amycolatopsis orientalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis orientalis	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10178700	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	860	Open in IMG/M
3300003505\|JGIcombinedJ51221_10350319	Not Available	600	Open in IMG/M
3300004479\|Ga0062595_100087720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1602	Open in IMG/M
3300005174\|Ga0066680_10326437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300005332\|Ga0066388_107432003	Not Available	550	Open in IMG/M
3300005363\|Ga0008090_13665632	Not Available	647	Open in IMG/M
3300005406\|Ga0070703_10459988	Not Available	565	Open in IMG/M
3300005435\|Ga0070714_102213200	Not Available	535	Open in IMG/M
3300005445\|Ga0070708_101408082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	650	Open in IMG/M
3300005445\|Ga0070708_101743713	Not Available	578	Open in IMG/M
3300005467\|Ga0070706_100014084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7389	Open in IMG/M
3300005467\|Ga0070706_100032436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4818	Open in IMG/M
3300005467\|Ga0070706_100075376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3122	Open in IMG/M
3300005471\|Ga0070698_100206127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1901	Open in IMG/M
3300005533\|Ga0070734_10715082	Not Available	569	Open in IMG/M
3300005542\|Ga0070732_10332835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	913	Open in IMG/M
3300005575\|Ga0066702_10146670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1393	Open in IMG/M
3300005610\|Ga0070763_10046019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2059	Open in IMG/M
3300006028\|Ga0070717_10517851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1079	Open in IMG/M
3300006755\|Ga0079222_11715101	Not Available	603	Open in IMG/M
3300010048\|Ga0126373_10423065	Not Available	1361	Open in IMG/M
3300010048\|Ga0126373_13069445	Not Available	520	Open in IMG/M
3300010360\|Ga0126372_11768120	Not Available	661	Open in IMG/M
3300010361\|Ga0126378_12179482	Not Available	632	Open in IMG/M
3300010361\|Ga0126378_12644125	Not Available	573	Open in IMG/M
3300010366\|Ga0126379_10634803	Not Available	1157	Open in IMG/M
3300010376\|Ga0126381_100504246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1707	Open in IMG/M
3300010379\|Ga0136449_100226343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3510	Open in IMG/M
3300010379\|Ga0136449_100573957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1932	Open in IMG/M
3300010937\|Ga0137776_1048425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	882	Open in IMG/M
3300012930\|Ga0137407_10574396	Not Available	1057	Open in IMG/M
3300016270\|Ga0182036_11111937	Not Available	655	Open in IMG/M
3300016294\|Ga0182041_11745751	Not Available	576	Open in IMG/M
3300016387\|Ga0182040_11179370	Not Available	644	Open in IMG/M
3300016422\|Ga0182039_11485359	Not Available	617	Open in IMG/M
3300016445\|Ga0182038_10277961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis orientalis	1359	Open in IMG/M
3300016445\|Ga0182038_11476693	Not Available	610	Open in IMG/M
3300017821\|Ga0187812_1040273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1588	Open in IMG/M
3300017822\|Ga0187802_10233828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	710	Open in IMG/M
3300017932\|Ga0187814_10301213	Not Available	614	Open in IMG/M
3300017937\|Ga0187809_10015449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2472	Open in IMG/M
3300017942\|Ga0187808_10478024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	576	Open in IMG/M
3300017955\|Ga0187817_10255548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1116	Open in IMG/M
3300017955\|Ga0187817_10496286	Not Available	779	Open in IMG/M
3300017961\|Ga0187778_10668707	Not Available	700	Open in IMG/M
3300018007\|Ga0187805_10389553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	646	Open in IMG/M
3300018085\|Ga0187772_10862076	All Organisms → cellular organisms → Bacteria → Terrabacteria group	656	Open in IMG/M
3300020580\|Ga0210403_11057014	Not Available	633	Open in IMG/M
3300020582\|Ga0210395_10006239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9060	Open in IMG/M
3300021178\|Ga0210408_10147746	Not Available	1861	Open in IMG/M
3300021178\|Ga0210408_10822636	Not Available	726	Open in IMG/M
3300021405\|Ga0210387_10099008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2436	Open in IMG/M
3300021406\|Ga0210386_11687237	Not Available	524	Open in IMG/M
3300021407\|Ga0210383_10898796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300021478\|Ga0210402_10026683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4977	Open in IMG/M
3300021560\|Ga0126371_10233134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1949	Open in IMG/M
3300022724\|Ga0242665_10257965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300025910\|Ga0207684_10008962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8872	Open in IMG/M
3300025910\|Ga0207684_10021354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5527	Open in IMG/M
3300025910\|Ga0207684_10324354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1327	Open in IMG/M
3300025922\|Ga0207646_10263255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1558	Open in IMG/M
3300026551\|Ga0209648_10557231	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300026551\|Ga0209648_10719684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300027090\|Ga0208604_1013587	Not Available	773	Open in IMG/M
3300027826\|Ga0209060_10469437	Not Available	571	Open in IMG/M
3300027842\|Ga0209580_10192576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1010	Open in IMG/M
3300027855\|Ga0209693_10038086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2359	Open in IMG/M
3300029636\|Ga0222749_10252511	Not Available	898	Open in IMG/M
3300031543\|Ga0318516_10031476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2803	Open in IMG/M
3300031543\|Ga0318516_10428985	Not Available	761	Open in IMG/M
3300031544\|Ga0318534_10220125	Not Available	1095	Open in IMG/M
3300031546\|Ga0318538_10706038	Not Available	547	Open in IMG/M
3300031561\|Ga0318528_10608025	All Organisms → cellular organisms → Bacteria → Terrabacteria group	586	Open in IMG/M
3300031572\|Ga0318515_10525081	Not Available	631	Open in IMG/M
3300031679\|Ga0318561_10373079	Not Available	783	Open in IMG/M
3300031681\|Ga0318572_10270725	Not Available	1001	Open in IMG/M
3300031708\|Ga0310686_111714903	Not Available	761	Open in IMG/M
3300031723\|Ga0318493_10506758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300031747\|Ga0318502_10895791	Not Available	539	Open in IMG/M
3300031748\|Ga0318492_10689943	Not Available	547	Open in IMG/M
3300031751\|Ga0318494_10568212	Not Available	662	Open in IMG/M
3300031769\|Ga0318526_10228628	Not Available	761	Open in IMG/M
3300031771\|Ga0318546_11004225	Not Available	587	Open in IMG/M
3300031792\|Ga0318529_10371570	Not Available	666	Open in IMG/M
3300031794\|Ga0318503_10222863	Not Available	612	Open in IMG/M
3300031846\|Ga0318512_10276634	Not Available	832	Open in IMG/M
3300031896\|Ga0318551_10537334	Not Available	672	Open in IMG/M
3300031897\|Ga0318520_10584216	Not Available	694	Open in IMG/M
3300031897\|Ga0318520_10872879	Not Available	566	Open in IMG/M
3300031910\|Ga0306923_11842740	Not Available	620	Open in IMG/M
3300031912\|Ga0306921_10448962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300032008\|Ga0318562_10693223	Not Available	586	Open in IMG/M
3300032041\|Ga0318549_10195424	All Organisms → cellular organisms → Bacteria → Terrabacteria group	908	Open in IMG/M
3300032043\|Ga0318556_10262254	All Organisms → cellular organisms → Bacteria → Terrabacteria group	902	Open in IMG/M
3300032043\|Ga0318556_10279802	Not Available	872	Open in IMG/M
3300032066\|Ga0318514_10363589	Not Available	767	Open in IMG/M
3300032067\|Ga0318524_10218732	Not Available	976	Open in IMG/M
3300032770\|Ga0335085_10031791	All Organisms → cellular organisms → Bacteria	7347	Open in IMG/M
3300032770\|Ga0335085_10508094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1374	Open in IMG/M
3300032954\|Ga0335083_10505220	Not Available	1011	Open in IMG/M
3300033158\|Ga0335077_10133083	All Organisms → cellular organisms → Bacteria	2875	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.42%
Aquatic	Environmental → Aquatic	10.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.42%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.42%
Loam	Environmental → Terrestrial → Soil → Loam	18.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101787002	3300003505	Forest Soil	MTALIAFTAIGLFAAGVVAGIIGVVCVAIRREERHLTLTSEATDRVTRAGRWLNGVGVRAAH*
JGIcombinedJ51221_103503192	3300003505	Forest Soil	MTTLIASAALCLFAAGACTGIIGVVRVAIRREEKHLTLTSKATSHVTQAGRLLNGVGVRAPHR*
Ga0062595_1000877202	3300004479	Soil	MTTLIPSAALCLFAVGACTGIIGVVSLAIHREEKHLTLTSEATSHLTRAGRLLNGVGVRAPHR*
Ga0066680_103264373	3300005174	Soil	FTAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV*
Ga0066388_1074320031	3300005332	Tropical Forest Soil	MTTLIASAALCLFAAGACAGIIGVVTLAIRREDKHLTLTSQATSHLTRAGRWLNGVGVRAPHR*
Ga0008090_136656322	3300005363	Tropical Rainforest Soil	MTALIAFAAIGLFAAGACTGIIGVVSVAIRREDKHLTLTAEATDNVTRAGRWMTGVRVRAPRHSAAADQETAPA*
Ga0070703_104599881	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLIASAALCLFAAGACTGIIGVVRVAIRREEKHLTLTSKATSHITQAGRLLNGVGVR
Ga0070714_1022132001	3300005435	Agricultural Soil	MAVLITATAISLFAAGMVAGIISVVCVAIRREETDFTLTREATSRVTRAGRRLNGVGVRAQHHSPQLAERGRLSNSPPD*
Ga0070708_1014080822	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTALIAFAAIGLFAAGACTGIIGVVSVAIRREDKHLTLTREATGHVIRAGRRLTGVHVRAPRHSAAADQETAPA*
Ga0070708_1017437132	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAALIVLAALGLFTAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV*
Ga0070706_1000140843	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTALIVLAALGLFTAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV*
Ga0070706_1000324363	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MATLIALGAIGLFTAGVIAGIIGVVSLAIRREERNHSLTSAATDNLTRAGRWLNGVHVRSPQSTAASSRA*
Ga0070706_1000753763	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLIASAALCLFAAGACTGIIGVVRVAIRREEKHLTLTSKATSHITQAGRLLNGVGVRAPHR*
Ga0070698_1002061271	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAALIVLAALGLFTAGVVAGIIGVVCVAIRRKETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV*
Ga0070734_107150821	3300005533	Surface Soil	MTTLIAFAALCLFAAGACTGIIGVVCLAIRREDKHLTLTSEATSHVTRAGRLLNGVGVRAPHRQAPR*
Ga0070732_103328352	3300005542	Surface Soil	MTALIAFAAIGLFAAGACTGIIGVVSVAIRREDKHLTLTREATGHVTRAGRWLTGVHVRAPRHSAAADQETVPA*
Ga0066702_101466702	3300005575	Soil	MTTLIAFAALCLFAAGGCTGIIGAVRVAIRREEKHLTLTSKATSHVTRAGRLLNGVGVRGPHR*
Ga0070763_100460192	3300005610	Soil	MTTLLAFAALSLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR*
Ga0070717_105178512	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAALIALSALSLFTAGVTAGIIGVVTVAIRREERNLTLTREAADHVTRAGRWLNGVGVRAPWPATATDREAARH*
Ga0079222_117151013	3300006755	Agricultural Soil	MTTLIASTALCLFAAGACTGIIGVVCVAIRREEKHLTLTCEATSHVTRAGRLLNGVGVRAPHR*
Ga0126373_104230652	3300010048	Tropical Forest Soil	MPTLIALAAIALFIAGAATGIIGVVCVAIRREDKNLTLTSQAPDNVTRAGRWLNGVHVRA
Ga0126373_130694451	3300010048	Tropical Forest Soil	MATLIALGAIGPFITGAATGITGAVCVANRREDKNLTLTSQATDNVTWVGRWLNKAHARASIP*
Ga0074045_102044462	3300010341	Bog Forest Soil	MAPLIALAAIILFAAGVTAGVVGVVTVAIRREETNFTLTSEATDRVTRTGRWVNGVGVRVQRHADVGQT*
Ga0126372_117681201	3300010360	Tropical Forest Soil	MAALIALAAVGLFAAGATAGIIGVVCVAIRREDTNLTLTSEASDQVTRAGRWLNGVGVRAPHRSAPAGRETTPA*
Ga0126378_121794821	3300010361	Tropical Forest Soil	VATLIALGAIGLFIAGAATGIIGVVCVAIRREDRNLTLTSQATDNVTRVGRWLNGVHVRFDP*
Ga0126378_126441252	3300010361	Tropical Forest Soil	IGLFIAGAATGVIGVVCVAIRREDKNLTLTSQPTDRVTRAGRCLNGAHVRA*
Ga0126379_106348032	3300010366	Tropical Forest Soil	MATLIALGAIGLFIAGAATGIIGVVCVAIRREDRNLTLTSQATDNVTRAGRWLNGVHVRFDP*
Ga0126381_1005042462	3300010376	Tropical Forest Soil	MATLIALGAIGLFIAGAATGIIGVVCVAIRREDRNLTLTSQATDNVTRVGRWLNGVHVRFDP*
Ga0136449_1002263431	3300010379	Peatlands Soil	MTTLIASAALCLFAAGACTGIIGVVCVAIRREEKHLTLTSEATNHVTRAGRLLNGVGVRGPHR*
Ga0136449_1005739573	3300010379	Peatlands Soil	MALLIALAAIGLFAAGVTAGIVGVVSVAIRREDKNLTLTSEATDPVTQTARWVNGVYVRAPGRT*
Ga0137776_10484251	3300010937	Sediment	MTALIASAALCLFAAGACTGIIGVVCVAIRREEKHLTLTSKATSHVTRAGRLLNGVGVRGLHR*
Ga0137407_105743962	3300012930	Vadose Zone Soil	MTTLIAFAALCLFAAGACTGIIGVVCVAIRREEKHLTLTSKATSHVTRAGRLLNGVGVRGPHR*
Ga0182036_111119372	3300016270	Soil	MATLTALAAIALFIAGAATGIIGVVCVAIRREDKNLTLTSQATDNVTRAGLWLNGVHVRALSPARLSAGRRHL
Ga0182041_117457512	3300016294	Soil	MATLIALAAIALFIAGAATGIIGVVCVAIRREDKKLTLTSQATDNVTRAGRWLNGVHVRA
Ga0182040_111793702	3300016387	Soil	MATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGR
Ga0182039_114853591	3300016422	Soil	MATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATDNVSRAGRWLTGVHVRASIPSVATGRPTTPP
Ga0182038_102779611	3300016445	Soil	MATLTALAAIALFIAGAATGIIGVVCVAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0182038_114766931	3300016445	Soil	LIALAAVGLFAAGATAGIIGVVCMAIRWEDRNLTLTSQATDNVTRTGCWVNGVGVRAPRRPN
Ga0187812_10402732	3300017821	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTQAGRWLNGVGVRSPHHSAAAARATTLV
Ga0187802_102338282	3300017822	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTRAGRWLNGVGVRSPHHSAATARATTLV
Ga0187814_103012132	3300017932	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTQAGRWLNGVGV
Ga0187809_100154494	3300017937	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATVHLTRAGRWLNGVGVRSPHHSAATARATTLV
Ga0187808_104057241	3300017942	Freshwater Sediment	ALAAICLFAAGAVAGITGVVVIAIRREDRNPTLTSQAPDTVTRAGRRLTGLHVRAPPAPPPVTGIKR
Ga0187808_104780242	3300017942	Freshwater Sediment	FAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTRAGRWLNGVGVRSPHHSAATARATTLV
Ga0187817_102555482	3300017955	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTQAGRWLNGVGVRSPHHSAATARATTLV
Ga0187817_104962862	3300017955	Freshwater Sediment	MAILIALAAIGLFAAGATAGVIGVVCVAVHREDKFLTLTSKPTDNVTRAGRWLNGVGVRAPGRPFPASTVRTETEGEPGNGR
Ga0187778_106687072	3300017961	Tropical Peatland	MAVLITLAALSLFTAGIVAGIIGVVCVAIRREETNLTLTSEATDPVIRAGRRLNGVGIRAPGRSAAAGRDTTLV
Ga0187805_103895532	3300018007	Freshwater Sediment	MTVMIAVTAVALFAAGAVAGIIGVVCVAIRREEANLTLTSEATGHLTQAGRWLNGVGVRSPHPSAAAARATTLV
Ga0187772_108620761	3300018085	Tropical Peatland	LIASAAIRPFAADACTGAIGVVNGAIRREDRHLALTSQATDHVTRAGRWLTRVQVRVRQPDPPREK
Ga0210403_110570142	3300020580	Soil	MTTLVAFAALCLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0210395_100062395	3300020582	Soil	MTALIAFTAIGLFAAGVVAGIIGVVCVAIRREERHLTLTSEATDRVTRAGRWLNGVGVRAAH
Ga0210408_101477461	3300021178	Soil	MTTLIASAALCLFAAGACTGIIGVVRVAIRREEKHLTLTSKATSHITQAGRLLNGVGVRAPHR
Ga0210408_108226361	3300021178	Soil	MTTLIASAAQCLFAAGACTGIVGVVSLAIRREDKHLTLTGEATSHVTRPGRWPNGVGVRAPHR
Ga0210387_100990082	3300021405	Soil	MTTLLAFAALCLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0210386_116872372	3300021406	Soil	MTTLIASAALCLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0210383_108987962	3300021407	Soil	MTTLLAFAALSLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLN
Ga0210402_100266833	3300021478	Soil	MTTLIASAALCLYAAGACTGIIGVVCVAIRREEKHLTLTSEVTSHVTRAGRLLNGVGVRGPHR
Ga0126371_102331342	3300021560	Tropical Forest Soil	VATLIALGAIGLFIAGAATGIIGVVCVAIRREDRNLTLTSQATDNVTRAGRWLNGVHVRFDP
Ga0242665_102579651	3300022724	Soil	MALLIALAAIGLFAAGVTAGIVGVVSVAIRREDKNLTLTSEATDPVTQTARWVNGVYVRAPSRM
Ga0207684_100089623	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTALIAFAAIGLFAAGACTGIIGVVSVAIRREDKHLTLTREATGHVIRAGRRLTGVHVRAPRHSAAADQETAPA
Ga0207684_100213542	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MATLIALGAIGLFTAGVIAGIIGVVSLAIRREERNHSLTSAATDNLTRAGRWLNGVHVRSPQSTAASSRA
Ga0207684_103243543	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTALIVLAALGLFTAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV
Ga0207646_102632552	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAALIVLAALGLFTAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGVGVRAPHLSAAAGRETTLV
Ga0209648_105572311	3300026551	Grasslands Soil	MTALIAFAAVGLFAAGACTGIIGVVSVAIRREDKHLTLTREATGHVTRAGRRLTGVHVRAPRHSAAADQETAPA
Ga0209648_107196842	3300026551	Grasslands Soil	MATLIALGAFGLFTAGVIAGIIGVVSLAIRREERNHSLTSAATDNLTRAGRRLNGVH
Ga0208604_10135871	3300027090	Forest Soil	ALCLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0209040_100502642	3300027824	Bog Forest Soil	MAPLIALAAIILFAAGVTAGVVGVVTVAIRREETNFTLTSEATDRVTRTGRWVNGVGVRVQRHADVGQT
Ga0209060_104694371	3300027826	Surface Soil	MTTLIAFAALCLFAAGACTGIIGVVCLAIRREDKHLTLTSEATSHVTRAGRLLNGVGVRAPHRQAPR
Ga0209580_101925762	3300027842	Surface Soil	MTALIAFAAIGLFAAGACTGIIGVVSVAIRREDKHLTLTREATGHVTRAGRWLTGVHVRAPRHSAAADQETVPA
Ga0209693_100380862	3300027855	Soil	MTTLLAFAALSLFAAGACTGIIGVVCVAIRREERHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0222749_102525112	3300029636	Soil	MTTLVAFAALCLFAAGACTGIIGVVCVAIRREEKHLTLTSEATSHVTRAGRLLNGVGVRGPHR
Ga0318516_100314764	3300031543	Soil	MATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318516_104289852	3300031543	Soil	MTALIASAAISPFAADPCTGAIGVVNGAIRREDRHLTLTREATGHVTRAGHWLNGVGVRAPHRAAPTGWETTLA
Ga0318534_102201252	3300031544	Soil	MATLIALGAIGLFIAGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318538_107060381	3300031546	Soil	MAVLIALVALGLFIAGVVAGIIGVVCVAIRREETNLTLTSEATDRVTRAGRRLTGLGVRGLHHSAAAGRETTLV
Ga0318528_106080251	3300031561	Soil	ATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318515_105250811	3300031572	Soil	MATLIALGAIGLFIAGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGV
Ga0318561_103730792	3300031679	Soil	MAALIALAAVGLFAAGATAGIIGVVCMAIRWEDRNLTLTSQATDNVTRTGCWVNGVGVRAPRRPN
Ga0318572_102707251	3300031681	Soil	MAVLIALTAFGLFAAGATAGITGVVSLAIHREDKNLTLTSEATDNVTRAGRRLNGVGVRIPRRNAAA
Ga0310686_1117149031	3300031708	Soil	MTTLIASAALRLFAARACTGIIGVVSLAIRREDKHLTLTGEATSHVTRAGRWPNGVGRSRSAPLGAAF
Ga0318493_105067581	3300031723	Soil	GAIGLFIAGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318502_108957912	3300031747	Soil	MATLIALGAIGLFIAGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWLNGVHVRA
Ga0318492_106899431	3300031748	Soil	MATLIALTATGLFIAGAATGVIGVVCLAIRREDKNLTLTSQATDNVTRAGRWLNGVHV
Ga0318494_105682122	3300031751	Soil	MATLIALAAIALFIAGAATGIIGVLCVAIRREDKNLTLTSQATDNVTRAGRWLN
Ga0318526_102286281	3300031769	Soil	MATLIALAAIGLFLAGAATGIIGVVCVAIRREDKNLTLTSQPTDRVTRAGRRLNGAHFRA
Ga0318546_110042251	3300031771	Soil	MTALIAFAAIGLFVAGACTGIIGVVSVAIHREDKHLTLASAATSHVERAGRRLTGVHVCPGSAPRRSR
Ga0318529_103715701	3300031792	Soil	TMIVSAALCLFAAGACTGIIGVVCVAIRREEKHLTLTSKATSHVTRAGRLLNGVGVRGPH
Ga0318503_102228631	3300031794	Soil	MATLIALGAIGLFIAGAATGIIGVVCVAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318512_102766341	3300031846	Soil	MATLIALGAIGLFIAGAATGIIGVVCVAIRREDKNLTLTSQAADNVTRVGRWVNGVHVRA
Ga0318551_105373341	3300031896	Soil	MATLIALTATGLFIAGAATGVIGVVCLAIRREDKNLTLTSQATDNVSRAGRWLTGVHVRASIPSVATGRPTTPA
Ga0318520_105842161	3300031897	Soil	MAALIALAALGLFTAGVVAGIIGVVCVAIHREETNLTLTSQATDHVTRAGRWLNGVGVHAPHCSAAADRETTLV
Ga0318520_108728791	3300031897	Soil	MAVLIALTAFGLFAAGATAGITGVVSLAIHREDKNLTLTSEATDNVTRAGRRLNGVGVRIPRRNAA
Ga0306923_118427401	3300031910	Soil	MAVLIALTAFGLFAAGATAGITGVVSLAIHREDKNLTLTSEATDNVTRAGR
Ga0306921_104489623	3300031912	Soil	MAALIALAAVGLFAAGATAGIIGVVCVAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318562_106932231	3300032008	Soil	MATLIALAAIGLFLAGAATGIIGVVCVAIRREDKNLTLTSQPTDRVTRAGRWLNGAHVRA
Ga0318549_101954242	3300032041	Soil	MATLIALTATGLFIAGAATGVIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318556_102622541	3300032043	Soil	ATLIALGAIGLFIAGAATGIIGVVCLAIRREDKNLTLTSQATDNVTRVGRWVNGVHVRA
Ga0318556_102798021	3300032043	Soil	MTALIASAAISPFAADPCTGAIGVVNGAIRREDRHLTLTREATGHVTRAGRWLNGVGVRAPHRAAPTGRETTLA
Ga0318514_103635892	3300032066	Soil	MATLIALTATGLFIAGAATGVIGVVCLAIRREDKNLTLTSQATDNVTRAGRWLNGVHVRA
Ga0318524_102187322	3300032067	Soil	MATLIALGAIGLFITGAATGIIGVVCLAIRREDKNLTLTSQATHNVTRAGRWLCGVHVRASIPSTAAGRHTTLA
Ga0335085_100317918	3300032770	Soil	MAALIALTAFGLFAAGAIAGIIGVVCLAIHREDKNLSLMSEATDNITRAGRWLNGVGIRAPRRNAAA
Ga0335085_105080942	3300032770	Soil	MTTLIASAALCLFAAGACTGIIGVVCVAIRREDKHLTLTSEATSHVTRAGRLLNGVGVRGLHR
Ga0335083_105052201	3300032954	Soil	MTTLIASAALCLFAAGACTGIIGVVCVAIRREDKHLTLTSEATSHVTRAGR
Ga0335077_101330835	3300033158	Soil	MATLIALAAIGLFIAGAATGIIGVVSVAIRREDKNLTLTSQATDNVTRAGRWLTGAHVRASIPSATPGRQTTLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097074

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences