Metagenome / Metatranscriptome Family F097056

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097056
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	78 residues
Representative Sequence	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	30.10 %
% of genes near scaffold ends (potentially truncated)	40.38 %
% of genes from short scaffolds (< 2000 bps)	68.27 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (37.500 % of family members)
Environment Ontology (ENVO)	Unclassified (72.115 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.97% β-sheet: 0.00% Coil/Unstructured: 38.03%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF09365	DUF2461	17.31
PF00578	AhpC-TSA	2.88
PF00753	Lactamase_B	2.88
PF13458	Peripla_BP_6	1.92
PF10851	DUF2652	1.92
PF00208	ELFV_dehydrog	1.92
PF07885	Ion_trans_2	1.92
PF13231	PMT_2	0.96
PF07883	Cupin_2	0.96
PF12840	HTH_20	0.96
PF00296	Bac_luciferase	0.96
PF01381	HTH_3	0.96
PF03098	An_peroxidase	0.96
PF00005	ABC_tran	0.96
PF02129	Peptidase_S15	0.96
PF13483	Lactamase_B_3	0.96
PF05016	ParE_toxin	0.96
PF00795	CN_hydrolase	0.96
PF00106	adh_short	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	1.92
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	1.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	63.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.58 %
Unclassified	root	N/A	2.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	63.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.88 %
Unclassified	root	N/A	2.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	63.46 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	4.81 %
Unclassified	root	N/A	2.88 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	60.58 %
Gammaproteobacteria bacterium 39-13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	4.81 %
Unclassified	root	N/A	2.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	60.58 %
Gammaproteobacteria bacterium 39-13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	4.81 %
Unclassified	root	N/A	2.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	60.58 %
Gammaproteobacteria bacterium 39-13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	4.81 %
Unclassified	root	N/A	2.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	60.58 %
Gammaproteobacteria bacterium 39-13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	4.81 %
Unclassified	root	N/A	2.88 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.96 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10013577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2921	Open in IMG/M
3300002558\|JGI25385J37094_10024082	All Organisms → cellular organisms → Bacteria	2166	Open in IMG/M
3300002558\|JGI25385J37094_10121991	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300002560\|JGI25383J37093_10055441	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1267	Open in IMG/M
3300002561\|JGI25384J37096_10016066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2899	Open in IMG/M
3300002561\|JGI25384J37096_10064058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1363	Open in IMG/M
3300002561\|JGI25384J37096_10085617	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300002562\|JGI25382J37095_10012968	All Organisms → cellular organisms → Bacteria	3153	Open in IMG/M
3300002908\|JGI25382J43887_10349927	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	627	Open in IMG/M
3300002909\|JGI25388J43891_1076945	Not Available	513	Open in IMG/M
3300002912\|JGI25386J43895_10075006	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300005166\|Ga0066674_10020941	All Organisms → cellular organisms → Bacteria	2822	Open in IMG/M
3300005167\|Ga0066672_10600768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	713	Open in IMG/M
3300005167\|Ga0066672_10611363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300005167\|Ga0066672_10967574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300005171\|Ga0066677_10096195	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300005171\|Ga0066677_10252693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	1001	Open in IMG/M
3300005172\|Ga0066683_10166539	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300005174\|Ga0066680_10105577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1728	Open in IMG/M
3300005175\|Ga0066673_10017601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3224	Open in IMG/M
3300005176\|Ga0066679_10012263	All Organisms → cellular organisms → Bacteria → Proteobacteria	4293	Open in IMG/M
3300005176\|Ga0066679_10257650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	1125	Open in IMG/M
3300005177\|Ga0066690_10112980	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1757	Open in IMG/M
3300005177\|Ga0066690_10157245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1497	Open in IMG/M
3300005179\|Ga0066684_10063938	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2156	Open in IMG/M
3300005181\|Ga0066678_10906342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	576	Open in IMG/M
3300005186\|Ga0066676_10439805	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	883	Open in IMG/M
3300005186\|Ga0066676_10926145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300005187\|Ga0066675_10060775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2366	Open in IMG/M
3300005187\|Ga0066675_10112842	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1814	Open in IMG/M
3300005445\|Ga0070708_101131025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	733	Open in IMG/M
3300005446\|Ga0066686_10001801	All Organisms → cellular organisms → Bacteria	9039	Open in IMG/M
3300005518\|Ga0070699_101749430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300005536\|Ga0070697_100044883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3580	Open in IMG/M
3300005553\|Ga0066695_10894088	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005554\|Ga0066661_10148326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1434	Open in IMG/M
3300005554\|Ga0066661_10163031	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300005555\|Ga0066692_11018109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300005559\|Ga0066700_10237331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1271	Open in IMG/M
3300005560\|Ga0066670_10292636	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	990	Open in IMG/M
3300005598\|Ga0066706_11049585	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300006046\|Ga0066652_101018273	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300006046\|Ga0066652_101045601	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300006791\|Ga0066653_10223728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	957	Open in IMG/M
3300006797\|Ga0066659_11560954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300007258\|Ga0099793_10636666	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009012\|Ga0066710_100269959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2473	Open in IMG/M
3300009038\|Ga0099829_10015015	All Organisms → cellular organisms → Bacteria	5155	Open in IMG/M
3300009088\|Ga0099830_10169593	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1691	Open in IMG/M
3300009088\|Ga0099830_10501057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	991	Open in IMG/M
3300009089\|Ga0099828_10205665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1758	Open in IMG/M
3300009090\|Ga0099827_10021596	All Organisms → cellular organisms → Bacteria → Proteobacteria	4478	Open in IMG/M
3300009090\|Ga0099827_10612454	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	939	Open in IMG/M
3300010130\|Ga0127493_1021977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	746	Open in IMG/M
3300010322\|Ga0134084_10025839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1614	Open in IMG/M
3300010322\|Ga0134084_10148666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300010323\|Ga0134086_10001310	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	6840	Open in IMG/M
3300010325\|Ga0134064_10185948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	738	Open in IMG/M
3300010336\|Ga0134071_10629215	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300012198\|Ga0137364_10041039	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3028	Open in IMG/M
3300012203\|Ga0137399_10053704	All Organisms → cellular organisms → Bacteria	2941	Open in IMG/M
3300012206\|Ga0137380_11647381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300012208\|Ga0137376_10010000	All Organisms → cellular organisms → Bacteria	6724	Open in IMG/M
3300012208\|Ga0137376_10097292	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2490	Open in IMG/M
3300012208\|Ga0137376_10721903	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300012356\|Ga0137371_10609000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300012361\|Ga0137360_10532602	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1002	Open in IMG/M
3300012363\|Ga0137390_11019403	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300012371\|Ga0134022_1060752	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012390\|Ga0134054_1194853	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300012397\|Ga0134056_1269895	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	856	Open in IMG/M
3300012927\|Ga0137416_11192448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685	Open in IMG/M
3300012929\|Ga0137404_11142188	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	715	Open in IMG/M
3300012930\|Ga0137407_10368612	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300012972\|Ga0134077_10426791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300015358\|Ga0134089_10505251	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300018433\|Ga0066667_10008970	All Organisms → cellular organisms → Bacteria	4684	Open in IMG/M
3300018433\|Ga0066667_10054142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2441	Open in IMG/M
3300018433\|Ga0066667_10066450	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2258	Open in IMG/M
3300018433\|Ga0066667_10594625	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300018468\|Ga0066662_10003574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	7478	Open in IMG/M
3300018482\|Ga0066669_10098109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2026	Open in IMG/M
3300026296\|Ga0209235_1115886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1132	Open in IMG/M
3300026297\|Ga0209237_1016906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4242	Open in IMG/M
3300026297\|Ga0209237_1114414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1151	Open in IMG/M
3300026298\|Ga0209236_1094485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1357	Open in IMG/M
3300026298\|Ga0209236_1164435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	913	Open in IMG/M
3300026310\|Ga0209239_1003213	All Organisms → cellular organisms → Bacteria → Proteobacteria	9600	Open in IMG/M
3300026313\|Ga0209761_1030932	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3213	Open in IMG/M
3300026318\|Ga0209471_1014204	All Organisms → cellular organisms → Bacteria	4109	Open in IMG/M
3300026318\|Ga0209471_1114630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1153	Open in IMG/M
3300026323\|Ga0209472_1056016	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300026323\|Ga0209472_1118720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1038	Open in IMG/M
3300026329\|Ga0209375_1004271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9750	Open in IMG/M
3300026330\|Ga0209473_1076763	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1415	Open in IMG/M
3300026527\|Ga0209059_1235108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300026530\|Ga0209807_1250423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	599	Open in IMG/M
3300026538\|Ga0209056_10195370	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300026548\|Ga0209161_10033088	All Organisms → cellular organisms → Bacteria	3545	Open in IMG/M
3300027862\|Ga0209701_10381963	Not Available	789	Open in IMG/M
3300027875\|Ga0209283_10075242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium 39-13	2180	Open in IMG/M
3300027882\|Ga0209590_10023445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13	3155	Open in IMG/M
3300028536\|Ga0137415_10868591	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.23%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	61.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	37.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	24.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.12%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100135775	3300002558	Grasslands Soil	VTREKIDDAPATTYTARESGVSFARGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
JGI25385J37094_100240823	3300002558	Grasslands Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKA
JGI25385J37094_101219911	3300002558	Grasslands Soil	TYTARESGVSFAKGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
JGI25383J37093_100554412	3300002560	Grasslands Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
JGI25384J37096_100160662	3300002561	Grasslands Soil	VSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRLIRVIKAEGKT*
JGI25384J37096_100640583	3300002561	Grasslands Soil	VHLLLKRPAGWGTVLGFREGVIRFLEEHPGYVCAECLALSVGAPLSPTTMITLGLHPADGFATADDVCSRCHRLSRVIKAERKT*
JGI25384J37096_100856172	3300002561	Grasslands Soil	VLGFREGVIRFLEEHPGYVCAECLAASVGAPLSPTAMITLSLRQADGFATADDVCSRCHRLSRVIKAERKT*
JGI25382J37095_100129682	3300002562	Grasslands Soil	VSFAKGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
JGI25382J43887_103499271	3300002908	Grasslands Soil	HPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
JGI25388J43891_10769451	3300002909	Grasslands Soil	VSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRR
JGI25386J43895_100750062	3300002912	Grasslands Soil	VCLLLRGIXWLVQQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0066674_100209412	3300005166	Soil	VIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0066672_106007683	3300005167	Soil	LVWLLLRAPRRAVIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0066672_106113631	3300005167	Soil	MLEFREVVIKFLREHPDYVCAECLASSLGVPVHPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT*
Ga0066672_109675741	3300005167	Soil	RHVPSSCDTSLTREKIDDDPATTYTARESGVSFAKGHQLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0066677_100961954	3300005171	Soil	MLEFREGVIEFLKEHPDYVCAECLAVSLGVPPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT*
Ga0066677_102526932	3300005171	Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEG
Ga0066683_101665393	3300005172	Soil	FLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0066680_101055771	3300005174	Soil	VLGFREVVIRFLEEHPGYLCAECLALSLEVPLHPTTMITLGLHRAEGFATADDVCPQCRRFIRVIKAEKKT*
Ga0066673_100176013	3300005175	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGASAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT*
Ga0066679_100122632	3300005176	Soil	MLEFREGVIEFLKEHPDYVCAECLAVTLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT*
Ga0066679_102576502	3300005176	Soil	VSFAKGHQLAGAQVLDFREAVIRFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSR
Ga0066690_101129803	3300005177	Soil	VSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0066690_101572451	3300005177	Soil	MLEFREGVIEFLKEHPDYVCAACLAVSLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT*
Ga0066684_100639383	3300005179	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETNT*
Ga0066678_109063422	3300005181	Soil	LAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0066676_104398052	3300005186	Soil	VWLLLRAHRRAVIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVI
Ga0066676_109261452	3300005186	Soil	HRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0066675_100607752	3300005187	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT*
Ga0066675_101128423	3300005187	Soil	VIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0070708_1011310251	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSLGVCSRCQRLIRVIKAEGKT*
Ga0066686_100018012	3300005446	Soil	VHLLLRRPAGWGTVLGFREGVIRFLEEHPGYVCAECLALSVGAPLSPTTMITLGLHPADGFATADDVCSRCHRLSRVIKAERKT*
Ga0070699_1017494301	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PAPRALGKREDATAPDSMARAFASETRHVPSSCDTSVTREKIDDDPATTYTARESGVSFAKAHRRAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSLGVCSRCQRLIRVIKAEGKT
Ga0070697_1000448834	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSLGVCSRCQRLIRVIKAEGKT*
Ga0066695_108940882	3300005553	Soil	KEHPDYVCAECLAVSLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT*
Ga0066661_101483261	3300005554	Soil	MLEFREVVIKFLREHPDYVCAECLASSLGVPVHPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKA*
Ga0066661_101630313	3300005554	Soil	VTREKIDDDPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIK
Ga0066692_110181092	3300005555	Soil	AVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0066707_108993402	3300005556	Soil	LLRPLTPGTSLVWLLLRAHRRAVIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0066700_102373313	3300005559	Soil	MLEFREGVIEFLKEHPDYVCAECLAVSLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT*
Ga0066670_102926362	3300005560	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIK
Ga0066706_110495852	3300005598	Soil	VLGFRDVVIRFLEEHPGYLCAECLASSLEVPLHPTTMITLGLHRAEGFATADDVCPRCRRFIRVIKAEKKT*
Ga0066652_1010182731	3300006046	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGASAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVI
Ga0066652_1010456011	3300006046	Soil	YVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0066653_102237281	3300006791	Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKA
Ga0066659_115609541	3300006797	Soil	VGDARDWCAMLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT*
Ga0099793_106366661	3300007258	Vadose Zone Soil	WPAPGWCAMLEFRDGVIKFLKEHPDYVCAECLASSLGVPLHATTMITLGLHRADGFETVDALCSRCHRRIRVIKAETKT*
Ga0066710_1002699595	3300009012	Grasslands Soil	MLEFREGVIEFLKEHPDYVCAECLAVSLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT
Ga0099829_100150153	3300009038	Vadose Zone Soil	VTREKIDDAPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRADGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0099830_101695935	3300009088	Vadose Zone Soil	GVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRRIRVIKAEGKT*
Ga0099830_105010571	3300009088	Vadose Zone Soil	VTREKIDDDPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0099828_102056655	3300009089	Vadose Zone Soil	VTREKIDDDPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKA*
Ga0099827_100215967	3300009090	Vadose Zone Soil	VIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0099827_106124541	3300009090	Vadose Zone Soil	MLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0127493_10219773	3300010130	Grasslands Soil	LDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0134084_100258392	3300010322	Grasslands Soil	VIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKA
Ga0134084_101486661	3300010322	Grasslands Soil	EAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0134086_100013107	3300010323	Grasslands Soil	VSFAKEHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0134064_101859481	3300010325	Grasslands Soil	EVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0134071_106292152	3300010336	Grasslands Soil	SGWCTVLGFREGVIRFLEEHPGYVCAECLAASVGAPLSPTAMITLSLRQAYGFATADDVCSRCHRLSRVIKAERKT*
Ga0137364_100410392	3300012198	Vadose Zone Soil	MLEFREVVIKFLREHPDYVCAECLASSLGVPVHPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETTT*
Ga0137399_100537044	3300012203	Vadose Zone Soil	MLEFRDGVIKFLKEHPDYVCAECLASSLGVPLHATTMITLGLHRADGFETVDALCSRCHRRIRVIKAETKT*
Ga0137380_116473811	3300012206	Vadose Zone Soil	FLEEHPGFFCAECLASSIGAPLSPTTMVTLGLNRADGFATADDVCSRCYRLSRVIKAERKT*
Ga0137376_100100004	3300012208	Vadose Zone Soil	MLEFREVVIKFLREHPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETTT*
Ga0137376_100972922	3300012208	Vadose Zone Soil	VLGFREVVIRFLEEHPGYLCAECLASSLEVPLHPTTMITLGLHRAEGFATADDVCPRCRRFIRVIKAEKKT*
Ga0137376_107219033	3300012208	Vadose Zone Soil	RRAVIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0137371_106090002	3300012356	Vadose Zone Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVYPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0137360_105326021	3300012361	Vadose Zone Soil	VLGFREVVIRFLEEHPGYVCAECLASSLEVPLHPTTMITLGLHRAEGFATADDVCPQCRRFIRVIKAEKKT*
Ga0137390_110194032	3300012363	Vadose Zone Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSPVVCCRCQRLTRVIKAAGKS*
Ga0134022_10607522	3300012371	Grasslands Soil	PLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT*
Ga0134054_11948531	3300012390	Grasslands Soil	TTYTARESGVSFARGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0134056_12698953	3300012397	Grasslands Soil	AQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0137416_111924481	3300012927	Vadose Zone Soil	VRREKIDDDPATTYTARESGVSFAKGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT*
Ga0137404_111421881	3300012929	Vadose Zone Soil	VTREKIDDDPATTYTARESGVSFARGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0137407_103686123	3300012930	Vadose Zone Soil	VTREKIDDDPATTYTARESGVSFAKGHRLAGAHVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT*
Ga0134077_104267911	3300012972	Grasslands Soil	VHLLLKRPAGWGTVLGFREGVIRFLEEHPGYVCAECLALSEGAPLSPTTMITLGLHPADGFATADDVCSRCHRLSRVIKAERKT*
Ga0134089_105052511	3300015358	Grasslands Soil	GVIRFLEEHPGYVCAECLTASVGAPLSPTAMITLSLRQADGFATADDVCSRCHRLSRVIKAERKT*
Ga0066667_100089704	3300018433	Grasslands Soil	VSFAKEHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT
Ga0066667_100541422	3300018433	Grasslands Soil	MLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT
Ga0066667_100664503	3300018433	Grasslands Soil	VIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT
Ga0066667_105946251	3300018433	Grasslands Soil	MLEFREGVIEFLKEHPDYVCAECLAVSLGVPPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT
Ga0066662_100035741	3300018468	Grasslands Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT
Ga0066669_100981092	3300018482	Grasslands Soil	MLEFREVVIKFLREQPDYVCAECLASSLGASAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT
Ga0209235_11158862	3300026296	Grasslands Soil	VHLLLKRPAGWGTVLGFREGVIRFLEEHPGYVCAECLALSVGAPLSPTTMITLGLHPADGFATADDVCSRCHRLSRVIKAERKT
Ga0209237_10169068	3300026297	Grasslands Soil	VTREKIDDAPATTYTARESGVSFARGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0209237_11144142	3300026297	Grasslands Soil	KRPAGWGTVLGFREGVIRFLEEHPGYVCAECLALSVGAPLSPTTMITLGLHPADGFATADDVCSRCHRLSRVIKAERKT
Ga0209236_10944852	3300026298	Grasslands Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0209236_11644353	3300026298	Grasslands Soil	RRAGAQMLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQQAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0209239_100321310	3300026310	Grasslands Soil	VSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT
Ga0209761_10309322	3300026313	Grasslands Soil	MLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQQAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0209471_101420410	3300026318	Soil	MLEFREGVIEFLKEHPDYVCAECLAVTLGVSPHATTMITLGLHRADGFETVDHVCSRCHRRIRVIKAETKT
Ga0209471_11146301	3300026318	Soil	CVGGHARGWYAMLEFREVVIKFLREHPDYVCAECLASSLGVPVHPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT
Ga0209472_10560161	3300026323	Soil	VVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT
Ga0209472_11187201	3300026323	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGASAPPTTMITLGLHRADGFETVDDVCFRCHRRIRVIKAETKT
Ga0209375_10042711	3300026329	Soil	DTSLTREKIDDDPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT
Ga0209473_10767632	3300026330	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGAPAPPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETNT
Ga0209059_12351081	3300026527	Soil	MLEFREVVIKFLREHPDYVCAECLASSLGVPVHPTTMITLGLHRADGFETVDDVCSRCHRRIRVIKAETKT
Ga0209807_12504231	3300026530	Soil	MLEFREVVIKFLREQPDYVCAECLASSLGASAPPTTMITLGLHRAEGFATADDVCPRCRRFIRVIKAEKKT
Ga0209056_101953704	3300026538	Soil	WLLLRAHRRAVIPLREVVIKFLKEHPAYVCAECLASRLEAPVPPTTMITLGLHRADGFETADAVCPQCRRRTRVIKAENPT
Ga0209161_100330886	3300026548	Soil	VLGFRDVVIRFLEEHPGYLCAECLASSLEVPLHPTTMITLGLHRAEGFATADDVCPRCRRFIRVIKAEKKT
Ga0209701_103819631	3300027862	Vadose Zone Soil	VTREKIDDAPATTYTARESGVSFAKGHRLAGAQVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0209283_100752423	3300027875	Vadose Zone Soil	VLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKA
Ga0209590_100234452	3300027882	Vadose Zone Soil	VTREKIDDAPATTYTARESGVSFAKGHRLAGAQMLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLQRAEGFETSHGVCSRCQRLIRVIKAEGKT
Ga0137415_108685912	3300028536	Vadose Zone Soil	VRREKIDDDPATTYTARESGVSFAKGHRLAGAEVLDFREAVIKFLKEHPGYLCAECLASSLGVPVHPTTMITLGLRRAEGFETSHGVCSRCQRHIRVIKAEGKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097056

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences