Basic Information | |
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Family ID | F097052 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 54 residues |
Representative Sequence | GRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 2.88 % |
% of genes near scaffold ends (potentially truncated) | 97.12 % |
% of genes from short scaffolds (< 2000 bps) | 87.50 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (32.692 % of family members) |
Environment Ontology (ENVO) | Unclassified (60.577 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (65.385 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 65.31% β-sheet: 0.00% Coil/Unstructured: 34.69% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Grasslands Soil Agricultural Soil Soil Grasslands Soil Hardwood Forest Soil Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12053J15887_104196871 | 3300001661 | Forest Soil | TLEYLLRLKDEYPAAAFLQTLKSRGAPPIDAAEYRSLRGLKPGKDD* |
JGI25382J43887_103276491 | 3300002908 | Grasslands Soil | RSRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
JGI25388J43891_10187591 | 3300002909 | Grasslands Soil | VLQTQATRWQLAEILAAESGRSTFEYLLRLKDEYLAGTLLDTLKSRGAPPIDAAEYRSLRGLKPAKDD* |
JGI25386J43895_100867612 | 3300002912 | Grasslands Soil | AERGRSSLEYLLRLKDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
JGI25386J43895_101061121 | 3300002912 | Grasslands Soil | STLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0066674_102967682 | 3300005166 | Soil | LAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE* |
Ga0066672_100779891 | 3300005167 | Soil | VQARRSRLAEIVPAERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0066690_107584942 | 3300005177 | Soil | AEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
Ga0066684_104993172 | 3300005179 | Soil | ERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0066685_100548221 | 3300005180 | Soil | PAGAQRIVEELLQEQAVRWRLAEINPAGSGRSTLEFLFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0066678_106155262 | 3300005181 | Soil | WRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0066678_106608081 | 3300005181 | Soil | EAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0066676_102401611 | 3300005186 | Soil | LFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0070703_100185173 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | QLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATVLDALKGRGSPPIDAAEYRSLRGLKKR* |
Ga0070705_1002570972 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | LQLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATVLDALKGRGSPPIDAAEYRSLRGLKKR* |
Ga0070694_1010809001 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | ELLQLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATLLGALNGRGSPPIDAAEYRSLRGLKKR* |
Ga0066681_102024892 | 3300005451 | Soil | EVQARRSRLAEIVPAERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0070707_1013492381 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | EELLQLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATLLGALNGRGSPPIDAAEYRSLRGLKKR* |
Ga0070697_1006157901 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LRLKEGVLAASLLHALKSRGTPPIDAAEYRSLRGLKRGKGE* |
Ga0070695_1001781421 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | LEYLIRLRDEFLPATLLGALNGRGSPPIDAAEYRSLRGLKKR* |
Ga0070696_1003779301 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | RVVEELLQLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATVLDALKGRGSPPIDAAEYRSLRGLKKR* |
Ga0066701_102547902 | 3300005552 | Soil | RDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKHKGE* |
Ga0066707_103434142 | 3300005556 | Soil | WRLAEIVPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGMKKHKDT |
Ga0066698_106552682 | 3300005558 | Soil | LEIQARRWRLAEIVPAERGRSSLEYLLRLRDQFLPATLLDALKGRGSPPVDAAEYRSLRGLKKRKEE* |
Ga0066694_101217802 | 3300005574 | Soil | FRLKEGLLPGSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0066691_104272241 | 3300005586 | Soil | ETQAKRWQLAEILSVEGGRSTFEYLLRLKEEYLAATLLDTLKSRGAPPIDAAEYRSLRGLKPAKDD* |
Ga0066651_104230842 | 3300006031 | Soil | GRSTLEYLLRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKHKGE* |
Ga0066656_102077431 | 3300006034 | Soil | STLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR* |
Ga0066656_102271761 | 3300006034 | Soil | KEGLLPGSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0066653_102545962 | 3300006791 | Soil | AGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0066658_100520261 | 3300006794 | Soil | LLEVQARRWRLAEIVPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR* |
Ga0066659_110455222 | 3300006797 | Soil | EIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE* |
Ga0075426_102930681 | 3300006903 | Populus Rhizosphere | EFLPATLLDALKGRGTPPIDAAEYRSLRGMKKRKEE* |
Ga0075436_1010134742 | 3300006914 | Populus Rhizosphere | YLLRLKEGILAAAVLNVLKSRGSPPIDAAEYRSLRGLKRGKGE* |
Ga0079219_124620351 | 3300006954 | Agricultural Soil | GRSTFEYLLRLKEEYLAATLLGTLRECGAPPIDAAEYRSLRGLKPGKDD* |
Ga0075435_1000984693 | 3300007076 | Populus Rhizosphere | GRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
Ga0066710_1022343622 | 3300009012 | Grasslands Soil | EERLQLQARRWRRAEFVPAEQGRSTLEYLLRPRDEFLPATLLDALKGRGTPPIDAAEYRSLRGMKKHKDT |
Ga0099830_103116781 | 3300009088 | Vadose Zone Soil | EIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAVEYRSLRGLKKRKEE* |
Ga0099830_113652352 | 3300009088 | Vadose Zone Soil | LIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
Ga0066709_1011035581 | 3300009137 | Grasslands Soil | RDQFLPATLLDALKGRGSPPVDAAEYRSLRGLKKRKEE* |
Ga0134088_105608612 | 3300010304 | Grasslands Soil | WRLAEINPAGSGRSTLEFLFRLKEGLLPGSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE |
Ga0134084_100157491 | 3300010322 | Grasslands Soil | EQGRSTLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR* |
Ga0134086_100355783 | 3300010323 | Grasslands Soil | RVVEELLEVQARRWRLAEIVPAEQGRSSLEYLLRLRNEFLPTTLLDALKGHGTPPIDAAEYRSLRGLKKRKEE* |
Ga0134064_100311321 | 3300010325 | Grasslands Soil | ARRSRLAEIVPAERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0134065_100989942 | 3300010326 | Grasslands Soil | STLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0134065_102140842 | 3300010326 | Grasslands Soil | LEFLFRLKEGLLPCSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0134080_100678071 | 3300010333 | Grasslands Soil | TLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE* |
Ga0134063_100215933 | 3300010335 | Grasslands Soil | RSTLEFLFRLKEGLLPGSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0134063_101038351 | 3300010335 | Grasslands Soil | RSTLEYLIRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKRKEE* |
Ga0134066_100454202 | 3300010364 | Grasslands Soil | LAEINPAGSGRSTLEFLFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0150983_110146902 | 3300011120 | Forest Soil | FLPATLLDALKVRGTPPIDAVEYRSLRGLKKRKEE* |
Ga0137382_111744492 | 3300012200 | Vadose Zone Soil | EIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0137399_101490111 | 3300012203 | Vadose Zone Soil | LQVQARRWRLAEIVPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKR* |
Ga0137381_113576921 | 3300012207 | Vadose Zone Soil | RRWRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0137378_111881042 | 3300012210 | Vadose Zone Soil | RWRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE* |
Ga0137377_113512951 | 3300012211 | Vadose Zone Soil | RLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
Ga0137370_101526872 | 3300012285 | Vadose Zone Soil | LEYLLRLRDEFLPATLLDALKGRGTPPIDAVEYRSLRGLKKRKGE* |
Ga0137370_102331541 | 3300012285 | Vadose Zone Soil | GRSTLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR* |
Ga0137369_110567542 | 3300012355 | Vadose Zone Soil | DVLQTQTTRWQLAEILAAESGRSTLEYLLRLKDEYLAGTLLDTLKSRGAPPIDAAEYRSLRGLKPAKDD* |
Ga0137361_107556582 | 3300012362 | Vadose Zone Soil | LPATLLDALKGRGTPPIDAAEYRSLRGLKKHKGE* |
Ga0137390_104916621 | 3300012363 | Vadose Zone Soil | LAEIVPAEAGRSTLEYLIRLKDEFLPATLLDALKVRGTPPIDAVEYRSLRGLKKRKEE* |
Ga0137396_100498423 | 3300012918 | Vadose Zone Soil | AEQGRSSLEYLVRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKR* |
Ga0137396_106964921 | 3300012918 | Vadose Zone Soil | GRSTLEYLLRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKR* |
Ga0137419_106878361 | 3300012925 | Vadose Zone Soil | RSTLEYLVRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKH* |
Ga0134077_101889101 | 3300012972 | Grasslands Soil | ILPAGSGRSTLEYLLRLKEGILAASLLRALKSRGSPPIDAAEYRSLRGLKRGKGE* |
Ga0134077_101889442 | 3300012972 | Grasslands Soil | VTEQIVGASVEELLQEQAVRWRLAEINPAGSGRSTLEFLFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0134076_100518653 | 3300012976 | Grasslands Soil | VCWRLAEINPAGSGRSTLEFLFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE* |
Ga0134075_100155141 | 3300014154 | Grasslands Soil | RRWRLAEIVPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR* |
Ga0134075_100561283 | 3300014154 | Grasslands Soil | AEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE* |
Ga0134078_101845182 | 3300014157 | Grasslands Soil | LLDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE* |
Ga0137405_13384246 | 3300015053 | Vadose Zone Soil | MLLFTRPNRKPRIVVEELLELQARRWRLAEIVQAEQGRSSLEYLIRLRDEFLPGTLLDALKSRGTPPIDAAEYVRARLEERKEE* |
Ga0137420_14457202 | 3300015054 | Vadose Zone Soil | IVPAEQGRSSLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKDE* |
Ga0137403_103258981 | 3300015264 | Vadose Zone Soil | AQRVVEELLQVQARRWRLAEIVPAERGRSSLEYLLRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE* |
Ga0066667_103812361 | 3300018433 | Grasslands Soil | PEGGRSTFEYLLRLKEEFLAATLLDTLKSRGAPPIDAAEYRSLRGLKPGKDE |
Ga0066667_118540092 | 3300018433 | Grasslands Soil | LRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0193756_10270431 | 3300019866 | Soil | LAEIVPAEQGRSSLEYLIRLRDEFLPATLLDALKGRGSPPIDAAEYRSLRGLKKR |
Ga0179596_103243921 | 3300021086 | Vadose Zone Soil | LRQVQARRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0207646_110455762 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | PEAAQRVVEELLQLQAQRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATVLDALKGRGSPPIDAAEYRSLRGLKKR |
Ga0209238_11523442 | 3300026301 | Grasslands Soil | KDEYLAGTLLDTLKSRGAPPIDAAEYRSLRGLKPPKDD |
Ga0209239_13103851 | 3300026310 | Grasslands Soil | RDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0209761_10473841 | 3300026313 | Grasslands Soil | AEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE |
Ga0209761_11093382 | 3300026313 | Grasslands Soil | AEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE |
Ga0209268_11350411 | 3300026314 | Soil | EFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKEE |
Ga0209686_10393111 | 3300026315 | Soil | DGQARRSRLAEIVPAERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0209472_10303623 | 3300026323 | Soil | RLAEIVPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKHKGE |
Ga0209470_10013391 | 3300026324 | Soil | FLFRLKEGLLPGSLLEALKSRGSPPIDAAEYRSLRGLKKSKPE |
Ga0209801_11789721 | 3300026326 | Soil | YLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR |
Ga0209473_10131144 | 3300026330 | Soil | STLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0209267_10598073 | 3300026331 | Soil | RWRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKE |
Ga0209803_11985831 | 3300026332 | Soil | GRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0209804_10317741 | 3300026335 | Soil | YLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0209159_10168451 | 3300026343 | Soil | GAQRIVEELLQEQAVRWRLAEINPAGSGRSTLEFLFRLKEGLLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE |
Ga0209807_11371612 | 3300026530 | Soil | RLAEIVPAERGRSTLEYLVRLRDEFLPATLLEALKARGSPPVDAVEYRSLRGMKKRKEE |
Ga0209157_13915582 | 3300026537 | Soil | LLPASLLEALKSRGSPPIDAAEYRSLRGLKKSKPE |
Ga0209056_101609393 | 3300026538 | Soil | QARRWRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0209805_13672871 | 3300026542 | Soil | VPAEQGRSTLEYLLRLRDEFLPATLLDALKGRGSPPVDAAEYRSLRGLKKR |
Ga0209648_105282731 | 3300026551 | Grasslands Soil | LEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0179587_104383881 | 3300026557 | Vadose Zone Soil | ELLQVQARRWRLAEIVPAEQGRSSLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0208981_10567511 | 3300027669 | Forest Soil | TLEYLLRLKDEYPAAAFLQTLKSRGAPPIDAAEYRSLRGLKPGKDD |
Ga0209588_12318392 | 3300027671 | Vadose Zone Soil | LAEIVPAEQGRSSLEYLIRLRDEFLPATLLDALKGRGTPPIDAAEYRSLRGLKKRKEE |
Ga0209689_12291232 | 3300027748 | Soil | QARRWRLAEIVPAEAGRSTLEYLIRLRDEFLPATLLDALKGRGTPPVDAVEYRSLRGLKKRKEE |
Ga0209180_106082791 | 3300027846 | Vadose Zone Soil | EYLIRLRDEFLPATLLDALKGRGSPPIDAAEYRSLRGLKKR |
Ga0307477_106553031 | 3300031753 | Hardwood Forest Soil | GRSTLEYLIRLKDEFLPATLLDALKVRGTPPIDAVEYRSLRGLKKRKEE |
Ga0307473_105932792 | 3300031820 | Hardwood Forest Soil | VPAEQGRSSLEYLVRLRDEFLPATLLDALKGRGTPPVDAAEYRSLRGLKKRKED |
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