Basic Information | |
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Family ID | F096995 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 42 residues |
Representative Sequence | ALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA |
Number of Associated Samples | 76 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Archaea |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 85.58 % |
Associated GOLD sequencing projects | 61 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Archaea (83.654 % of family members) |
NCBI Taxonomy ID | 2157 |
Taxonomy | All Organisms → cellular organisms → Archaea |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.577 % of family members) |
Environment Ontology (ENVO) | Unclassified (59.615 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.538 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.50% β-sheet: 0.00% Coil/Unstructured: 72.50% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Grasslands Soil Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25385J37094_101156192 | 3300002558 | Grasslands Soil | ALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA* |
JGI25383J37093_100883881 | 3300002560 | Grasslands Soil | GQFDIVALWQAKTSEDIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
JGI25382J37095_100508032 | 3300002562 | Grasslands Soil | LWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
JGI25382J43887_102146871 | 3300002908 | Grasslands Soil | PGQFDIVALWQAKTSEEIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
JGI25390J43892_101272672 | 3300002911 | Grasslands Soil | QFDIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA* |
JGI25389J43894_10663932 | 3300002916 | Grasslands Soil | VPGQFDIVALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0066683_107765482 | 3300005172 | Soil | DIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA* |
Ga0066680_106025512 | 3300005174 | Soil | ALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
Ga0066685_108346281 | 3300005180 | Soil | LWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA* |
Ga0066678_101528323 | 3300005181 | Soil | TVPGQFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0070708_1000982391 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | TVPGQFDIVALWQAKTSEDIVKNSVERVTNLQGIFKSETLLAYAPFFKA* |
Ga0066686_106539312 | 3300005446 | Soil | VALWQARTSEDIVKTSVEKVSNLEGIFHSETLLAYAPFFKA* |
Ga0066689_108794961 | 3300005447 | Soil | VALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYSPFFKA* |
Ga0070707_1000554697 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | STVPGQFDIVALWQAKTSEDIVKNSVERVTNLQGIFKSETLLAYAPFFKA* |
Ga0066661_105791071 | 3300005554 | Soil | TSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA* |
Ga0066661_108875391 | 3300005554 | Soil | WQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0066704_100601971 | 3300005557 | Soil | ARTSEDIVKTSVERVSHLDGIFKSETLLAYAPFFKA* |
Ga0066704_102077473 | 3300005557 | Soil | RTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA* |
Ga0066698_104048681 | 3300005558 | Soil | VPGQFDIVALWQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA* |
Ga0066700_105975761 | 3300005559 | Soil | GQFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0066700_109338051 | 3300005559 | Soil | QARTSEDIVKTSVERVSHLDGIFKSETLLAYAPFFKA* |
Ga0066703_100782694 | 3300005568 | Soil | RTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA* |
Ga0066691_106138352 | 3300005586 | Soil | QFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLA* |
Ga0066665_100166311 | 3300006796 | Soil | QFDIVALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYSPFFKA* |
Ga0066665_101094035 | 3300006796 | Soil | WQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA* |
Ga0066665_103553343 | 3300006796 | Soil | ALWQAKTSEDIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0066665_109108712 | 3300006796 | Soil | ALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0066659_101084105 | 3300006797 | Soil | WQARTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA* |
Ga0066659_103964642 | 3300006797 | Soil | TSEDIMKNSVERITNLPGLFHSETLLAYAPFFKA* |
Ga0066659_105962922 | 3300006797 | Soil | TSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0066659_106618641 | 3300006797 | Soil | ALWQARTSEDIVKTSVERVSHLDGIFKSETLLAYAPFFKA* |
Ga0099794_100997581 | 3300007265 | Vadose Zone Soil | TVPGQFDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
Ga0099794_102935602 | 3300007265 | Vadose Zone Soil | WQARTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA* |
Ga0066710_1002068515 | 3300009012 | Grasslands Soil | WQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA |
Ga0066710_1007849111 | 3300009012 | Grasslands Soil | LWQARTSEDIVKTSIERVSNLEGIFKSETLLAYAPFFKA |
Ga0066710_1011408251 | 3300009012 | Grasslands Soil | ALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYSPFFKA |
Ga0066710_1032647092 | 3300009012 | Grasslands Soil | LWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA |
Ga0099829_113670751 | 3300009038 | Vadose Zone Soil | WQARTSEDIVKTSVEKVSNLEGIFKSETLLAYAPFFKA* |
Ga0099828_101318201 | 3300009089 | Vadose Zone Soil | WQAKTSEDIVKNSVERVTGLQGIFKSETLLAYAPFFKA* |
Ga0099827_102155873 | 3300009090 | Vadose Zone Soil | QARTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA* |
Ga0066709_1000425597 | 3300009137 | Grasslands Soil | ALWQAKTSEEIVKNTVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0066709_1010316601 | 3300009137 | Grasslands Soil | ALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYSPFFKA* |
Ga0066709_1041938662 | 3300009137 | Grasslands Soil | QAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0127492_10899911 | 3300010087 | Grasslands Soil | TSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
Ga0127483_10220361 | 3300010142 | Grasslands Soil | ALWQARTSEEIVKTSVERVTNLPGIFKSETLLAYAPFFKA* |
Ga0137391_108492511 | 3300011270 | Vadose Zone Soil | PGQFDIVALWQAKTSEDIVKNSVERVTSLQGIFKSETLLAYAPFFKA* |
Ga0137391_110145011 | 3300011270 | Vadose Zone Soil | VPGQFDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYSPFFKA* |
Ga0137391_111152011 | 3300011270 | Vadose Zone Soil | PGQFDIVALWQAKTSEDIVKNSVERVTSLQGIFKSETLLAYSPFFKA* |
Ga0137393_111818241 | 3300011271 | Vadose Zone Soil | GQFDIVALWQAKTSEDIVKNSAERATNLQGIFKSETLLAYSPFFKA* |
Ga0137389_108928001 | 3300012096 | Vadose Zone Soil | VALWQAKTSEDIVKNSVERVTNLQGIFHSETLLAYAPFFKA* |
Ga0137364_111406631 | 3300012198 | Vadose Zone Soil | QFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0137364_114392541 | 3300012198 | Vadose Zone Soil | QAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0137383_101357071 | 3300012199 | Vadose Zone Soil | QFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFNA* |
Ga0137383_109523061 | 3300012199 | Vadose Zone Soil | QARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA* |
Ga0137383_111508881 | 3300012199 | Vadose Zone Soil | TSEDIVKTSVEKVSNLEGIFHSETLLAYAPFFKA* |
Ga0137365_105954991 | 3300012201 | Vadose Zone Soil | ALWQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA* |
Ga0137399_108474381 | 3300012203 | Vadose Zone Soil | PGQFDIVALWQARTSEDIVKTSVEKVSHLDGIFRSETLLAYAPFFKA* |
Ga0137374_111283252 | 3300012204 | Vadose Zone Soil | DIVALWQARTSEEIMKNSVERFTNLQGLFHSETLLAFAPFFKA* |
Ga0137380_107554151 | 3300012206 | Vadose Zone Soil | LWQARTSEDIVKTSVEKVSNLEGIFHSETLLAYAPFFKA* |
Ga0137379_108946431 | 3300012209 | Vadose Zone Soil | ARTSEDIVKTSVEKVSNLEGIFHSETLLAYAPFFKA* |
Ga0137377_103721141 | 3300012211 | Vadose Zone Soil | IVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFNA* |
Ga0137377_118940591 | 3300012211 | Vadose Zone Soil | WQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA* |
Ga0137387_112639941 | 3300012349 | Vadose Zone Soil | GQFDIVALWQARTSEDIMKNSVERITNLPGLFHSETLLAYAPFFKA* |
Ga0137386_106001962 | 3300012351 | Vadose Zone Soil | WQAKTSEDIVKNSVERVTTLPGIFKSETLLAYAPFFKA* |
Ga0137385_100518188 | 3300012359 | Vadose Zone Soil | WQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFNA* |
Ga0137360_104869414 | 3300012361 | Vadose Zone Soil | QARTSEDIVKTSVERVSHLDGIFKSETILAYTPVFKA* |
Ga0137360_109391991 | 3300012361 | Vadose Zone Soil | FDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYSPFFKA* |
Ga0137390_104044521 | 3300012363 | Vadose Zone Soil | VPGQFDIVALWQAKTSEDIVKNSVERVTNLQGIFKSETLLAYSPFFKA* |
Ga0134058_12095841 | 3300012379 | Grasslands Soil | GQFDIVALWQARTSEDIVKQSVEKVSNLEGIFHGETLLAYAPFFKA* |
Ga0134050_12399031 | 3300012407 | Grasslands Soil | TTVPGQFDIVALWQAKTSEEIVKNTVERVTTLPGVFKSETLLAYAPFFKA* |
Ga0137396_101248344 | 3300012918 | Vadose Zone Soil | DIVALWQAKTSEDIVKNSVERVTNLQGIFHSETLLAYAPFFKA* |
Ga0137396_103902791 | 3300012918 | Vadose Zone Soil | QFDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA* |
Ga0137416_114447651 | 3300012927 | Vadose Zone Soil | ARTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA* |
Ga0137416_115562911 | 3300012927 | Vadose Zone Soil | FDIVALWQAKTSEDIVKNSVERVTNLQGIFKSETLLAYAPFFKA* |
Ga0134076_103308502 | 3300012976 | Grasslands Soil | WQAKTSEDIVKNSLERVTNLPGIFKSETLLAYAPFFKA* |
Ga0134087_103142281 | 3300012977 | Grasslands Soil | QARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA* |
Ga0134087_105196622 | 3300012977 | Grasslands Soil | STVPGQFDIVALWQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA* |
Ga0134075_100689875 | 3300014154 | Grasslands Soil | GQFDIVALWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA* |
Ga0134089_101561122 | 3300015358 | Grasslands Soil | RTSEDIVKTSVEKVTNLEGIFKSETLLAYAPFFKA* |
Ga0066667_100299164 | 3300018433 | Grasslands Soil | WQAKTSEEIVKTSVERVSHLDGIFKSETVLAYTPVFKA |
Ga0066667_122563051 | 3300018433 | Grasslands Soil | VALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA |
Ga0066662_113664081 | 3300018468 | Grasslands Soil | QARTSEDIVKTSVERVSHLDGIFKSETLLAYAPFFKA |
Ga0215015_100747333 | 3300021046 | Soil | AKTSEDIVKNSVERVTNLQGISKSETLLAYAPFFKA |
Ga0207646_106332632 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | PGQFDIVALWQAKTSEDIVKNSVERVTNLQGIFKSETLLAYAPFFKA |
Ga0209235_11403271 | 3300026296 | Grasslands Soil | ALWQARTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA |
Ga0209236_11916312 | 3300026298 | Grasslands Soil | VALWQARTSEDIVKTSIERVSNLQGIFKSETLLAYAPFFKA |
Ga0209055_10082595 | 3300026309 | Soil | LWQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA |
Ga0209055_10356535 | 3300026309 | Soil | VALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA |
Ga0209239_11872691 | 3300026310 | Grasslands Soil | IVALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA |
Ga0209761_11128592 | 3300026313 | Grasslands Soil | VALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA |
Ga0209154_10531464 | 3300026317 | Soil | VALWQAKTSEEIVKNSVERVTTLPGIFKSETLLAYAPFFKA |
Ga0209152_100083925 | 3300026325 | Soil | TVPGQFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA |
Ga0209801_11051152 | 3300026326 | Soil | ARTSEDIVKNSFERVTNLQGLFSSETLLAHLPFFNA |
Ga0209803_10248981 | 3300026332 | Soil | QFDIVALWQAKTSEEIVKNTVERVTTLPGIFKSETLLAYAPFFKA |
Ga0209806_10583031 | 3300026529 | Soil | GQFDIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA |
Ga0209160_11585602 | 3300026532 | Soil | RTSEDIVKTSVERVSNLEGIFKSETLLAYAPFFKA |
Ga0209376_13729101 | 3300026540 | Soil | VPGQFDIVALWQAKTSEEIVKTSVERVSHLDGIFKSETILAYTPVFKA |
Ga0209076_10900661 | 3300027643 | Vadose Zone Soil | PGQFDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA |
Ga0209689_13570602 | 3300027748 | Soil | VPGQFDIVALWQAKTSEEIVKNSVERVTTLPGVFKSETLLAYAPFFKA |
Ga0209180_101040521 | 3300027846 | Vadose Zone Soil | VALWQARTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA |
Ga0209590_104545872 | 3300027882 | Vadose Zone Soil | VPGQFDIVALWQARTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA |
Ga0137415_101208136 | 3300028536 | Vadose Zone Soil | IVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA |
Ga0137415_103497331 | 3300028536 | Vadose Zone Soil | IVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYSPFFKA |
Ga0307504_103538351 | 3300028792 | Soil | KTSEDIVKNSVERVTSLQGIFKSETLLAYSPFFKA |
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