Metagenome / Metatranscriptome Family F096984

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096984
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	55 residues
Representative Sequence	TQDARKDWRNLCREAVAERDPAKLIAIVNELNRELDEEQKKKAAVFLQKIDKKTA
Number of Associated Samples	78
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.27 %
% of genes near scaffold ends (potentially truncated)	37.50 %
% of genes from short scaffolds (< 2000 bps)	80.77 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (97.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (40.385 % of family members)
Environment Ontology (ENVO)	Unclassified (67.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.308 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25381J37097_10282711 2JGI25385J37094_100208873 3JGI25384J37096_100852261 4JGI25382J43887_101053972 5JGI25390J43892_100153334 6JGI25386J43895_101366462 7Ga0066672_109227662 8Ga0066680_100438785 9Ga0066690_100421893 10Ga0066685_100701963 11Ga0066678_102911813 12Ga0066676_104856261 13Ga0070708_1001283503 14Ga0066686_106243941 15Ga0066689_101082993 16Ga0066689_102287803 17Ga0066689_102364731 18Ga0066689_105749061 19Ga0070706_1019417261 20Ga0070707_1000577297 21Ga0070697_1001739755 22Ga0070697_1003438492 23Ga0066697_104704881 24Ga0066695_107190572 25Ga0066707_101252441 26Ga0066707_106816162 27Ga0066707_108629731 28Ga0066704_108825731 29Ga0066670_101307072 30Ga0066670_108161471 31Ga0066705_107062502 32Ga0066705_109081401 33Ga0066691_106599221 34Ga0066654_100734512 35Ga0066706_102414111 36Ga0066651_101159691 37Ga0066665_103531192 38Ga0066660_102668463 39Ga0066710_1015617342 40Ga0099829_101459182 41Ga0099829_102799821 42Ga0099830_100840123 43Ga0099828_102464744 44Ga0099827_104000081 45Ga0099827_105989112 46Ga0066709_1012119521 47Ga0066709_1018678021 48Ga0134082_100237306 49Ga0134082_101420663 50Ga0134082_104332522 51Ga0134088_100239952 52Ga0134109_100456334 53Ga0134066_103193922 54Ga0137391_105842213 55Ga0137393_102719811 56Ga0137389_100977603 57Ga0137383_102763771 58Ga0137365_108905792 59Ga0137362_102018313 60Ga0137362_102343922 61Ga0137379_103277691 62Ga0137378_102124802 63Ga0137378_103256963 64Ga0137387_100714663 65Ga0137367_103577723 66Ga0137366_106227102 67Ga0137371_108881232 68Ga0137384_103804421 69Ga0137385_103901693 70Ga0137360_118933491 71Ga0137361_101975963 72Ga0134055_12635051 73Ga0134081_100276093 74Ga0066667_106985591 75Ga0066667_107439331 76Ga0066667_110073021 77Ga0066662_102163174 78Ga0066662_106137231 79Ga0066662_118285842 80Ga0066662_121701792 81Ga0137408_10120293 82Ga0207684_100241073 83Ga0209234_10069315 84Ga0209236_11678962 85Ga0209236_11735291 86Ga0209238_11558121 87Ga0209265_11536582 88Ga0209472_10450032 89Ga0209472_11205834 90Ga0209801_10042004 91Ga0209801_11123772 92Ga0209266_10219944 93Ga0209802_10125734 94Ga0209802_12025631 95Ga0209802_12703911 96Ga0209159_10387924 97Ga0209059_10128937 98Ga0209806_10422821 99Ga0209056_106583652 100Ga0209156_100068407 101Ga0209161_101534592 102Ga0209180_100933162 103Ga0209180_101377711 104Ga0137415_107360481
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25381J37097_10282711 2Ga0066678_102911813 3Ga0066697_104704881 4Ga0066710_1015617342 5Ga0066709_1012119521 6Ga0137391_105842213 7Ga0137383_102763771 8Ga0137387_100714663
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25381J37097_10282711 2Ga0066678_102911813 3Ga0066697_104704881 4Ga0066710_1015617342 5Ga0066709_1012119521 6Ga0137391_105842213 7Ga0137383_102763771 8Ga0137387_100714663
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 90.91% β-sheet: 0.00% Coil/Unstructured: 9.09%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00072	Response_reg	7.69
PF08241	Methyltransf_11	4.81
PF13474	SnoaL_3	1.92
PF01740	STAS	1.92
PF00990	GGDEF	1.92
PF13418	Kelch_4	0.96
PF13432	TPR_16	0.96
PF02371	Transposase_20	0.96
PF13649	Methyltransf_25	0.96
PF09994	DUF2235	0.96

Showing 1 to 10 of 10 entries

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COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.12 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	84.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %
Unclassified	root	N/A	2.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	81.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Coleofasciculaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Coleofasciculus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus	0.96 %
Unclassified	root	N/A	2.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.77 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.96 %
Coleofasciculus chthonoplastes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → Coleofasciculus chthonoplastes	0.96 %
Unclassified	root	N/A	2.88 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1028271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300002558\|JGI25385J37094_10020887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2336	Open in IMG/M
3300002561\|JGI25384J37096_10085226	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300002908\|JGI25382J43887_10105397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1486	Open in IMG/M
3300002911\|JGI25390J43892_10015333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1819	Open in IMG/M
3300002912\|JGI25386J43895_10136646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300005167\|Ga0066672_10922766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005174\|Ga0066680_10043878	All Organisms → cellular organisms → Bacteria	2598	Open in IMG/M
3300005177\|Ga0066690_10042189	Not Available	2739	Open in IMG/M
3300005180\|Ga0066685_10070196	All Organisms → cellular organisms → Bacteria → Acidobacteria	2294	Open in IMG/M

Showing 1 to 10 of 104 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.23%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	59.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.62%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	19.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	40.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.92%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M

Showing 1 to 10 of 78 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10282711	3300002557	Grasslands Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
JGI25385J37094_100208873	3300002558	Grasslands Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
JGI25384J37096_100852261	3300002561	Grasslands Soil	VTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTX*
JGI25382J43887_101053972	3300002908	Grasslands Soil	VTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
JGI25390J43892_100153334	3300002911	Grasslands Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVFL*
JGI25386J43895_101366462	3300002912	Grasslands Soil	GIMTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0066672_109227662	3300005167	Soil	TQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0066680_100438785	3300005174	Soil	MTQDARKDWRNLCREAVAERDPAKLIAIVNELNRELDEEQKKKAAVFLQKVDQKTA*
Ga0066690_100421893	3300005177	Soil	MTQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDKEQKKKAAVFLQKVDQKTA*
Ga0066685_100701963	3300005180	Soil	MIQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLQKVDQKTA*
Ga0066678_102911813	3300005181	Soil	ITFQYISLWETSVTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0066676_104856261	3300005186	Soil	MIQDARKDWRKLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLQKVDQKTA*
Ga0070708_1001283503	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKTDKKTA*
Ga0066686_106243941	3300005446	Soil	VTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEERKKKAAVFLQKIDKKTA*
Ga0066689_101082993	3300005447	Soil	MTQDARKDWRNLCREAVSERDPYKLIAIVDELNRQLDEEQKKKAAVFLQKIDKKTA*
Ga0066689_102287803	3300005447	Soil	MTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0066689_102364731	3300005447	Soil	MIQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLQKV
Ga0066689_105749061	3300005447	Soil	MTQDARKDWRNLCREAVAERDPYKLVAIVDELNRELDEEQKKKAAVFLQKTDKKTA*
Ga0070706_1019417261	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDARKDWRNLCREAVAERDPAKLMAIVNEINRQLNEEQKKKAAVFLQKVDKKTA*
Ga0070707_1000577297	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKTDKKRA*
Ga0070697_1001739755	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDARKDWRDLCREAIAETDPTKLIAIVNELNRELDEAQKKKAAVFLQQIDKRRA*
Ga0070697_1003438492	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKTDKKTA*
Ga0066697_104704881	3300005540	Soil	FLSLLGGIMTHDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAALLQK*
Ga0066695_107190572	3300005553	Soil	MTQDARKDWRDLCREAVAETNPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
Ga0066707_101252441	3300005556	Soil	QDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0066707_106816162	3300005556	Soil	MTQDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAAFRQK*
Ga0066707_108629731	3300005556	Soil	MTHDARKDWRDLCRETVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKR
Ga0066704_108825731	3300005557	Soil	MTQDARKDWRDLCRAAVAVSDPAKLIAIVNELNRELDEEQKKKAAAFRQK*
Ga0066670_101307072	3300005560	Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRKA*
Ga0066670_108161471	3300005560	Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKR
Ga0066705_107062502	3300005569	Soil	IFLSLLGGIMTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0066705_109081401	3300005569	Soil	MTQDARKDWRNLCREAVSERDPYKLIAIVDELNRQLDEEQKKKAAVFLQKVDQKTA*
Ga0066691_106599221	3300005586	Soil	TQDARKDWRNLCREAVAERDPAKLIAIVNELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0066654_100734512	3300005587	Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVSLQQIDKRKA*
Ga0066706_102414111	3300005598	Soil	MTHDARKDWRDLCREAVAEADPARLIAIVNELNRELDEAQKKKAAVYLQQID
Ga0066651_101159691	3300006031	Soil	FFRFWEASMTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
Ga0066665_103531192	3300006796	Soil	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLRKIDKKTA*
Ga0066660_102668463	3300006800	Soil	QDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLRKIDKKTA*
Ga0066710_1015617342	3300009012	Grasslands Soil	MTQGARKDWRNLCREAVAERDPAKLIAMVNELNRELDEEQEKKAAVQQRVDKKTA
Ga0099829_101459182	3300009038	Vadose Zone Soil	MTHDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAALLQK*
Ga0099829_102799821	3300009038	Vadose Zone Soil	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0099830_100840123	3300009088	Vadose Zone Soil	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKTDKKKA*
Ga0099828_102464744	3300009089	Vadose Zone Soil	MTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELGEEQKKKAAVFLQKIDKKTA*
Ga0099827_104000081	3300009090	Vadose Zone Soil	MTEDARKDWRNLCREAVAERDPAKQMAIVNEINRQLDEEQKKKAAVFLQKIDKKTA*
Ga0099827_105989112	3300009090	Vadose Zone Soil	MTQDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKTAVFLQKLDKKRA*
Ga0066709_1012119521	3300009137	Grasslands Soil	IRAITFPHIRFWEASMTQGARKDWRNLCREAVAERDPAKLIAMVNELNRELDEEQEKKAAVQ*
Ga0066709_1018678021	3300009137	Grasslands Soil	MTHDARKDWRDLCRETVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA
Ga0134082_100237306	3300010303	Grasslands Soil	ARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
Ga0134082_101420663	3300010303	Grasslands Soil	GGIMTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0134082_104332522	3300010303	Grasslands Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEQKKKAAAFRQK*
Ga0134088_100239952	3300010304	Grasslands Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEQKKKAAALLQK*
Ga0134109_100456334	3300010320	Grasslands Soil	MTQDARKDWRDLCREAVAKTDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
Ga0134066_103193922	3300010364	Grasslands Soil	LLGGIMTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0137391_105842213	3300011270	Vadose Zone Soil	LCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0137393_102719811	3300011271	Vadose Zone Soil	DWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0137389_100977603	3300012096	Vadose Zone Soil	MTHDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAVLIQK*
Ga0137383_102763771	3300012199	Vadose Zone Soil	MPGKDWRDLCREAVAESDPAKLIAIVNELNRELDEEQKKKTAVFLQKLDKKRAQRE*
Ga0137365_108905792	3300012201	Vadose Zone Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELEEAQEKKAAVYLQQIDKRKA*
Ga0137362_102018313	3300012205	Vadose Zone Soil	MTHDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKTAVFLQKLDKKRAQRE*
Ga0137362_102343922	3300012205	Vadose Zone Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELDRELDEAQKKKAAVYLQQIDKRRA*
Ga0137379_103277691	3300012209	Vadose Zone Soil	ETSVTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0137378_102124802	3300012210	Vadose Zone Soil	MIQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDKEQKKKAAVFLQKVDQKTA*
Ga0137378_103256963	3300012210	Vadose Zone Soil	MTQDDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEQKKKTAVFLQK
Ga0137387_100714663	3300012349	Vadose Zone Soil	MTQDARKDWRDLCRAAVAESDSAKLIAIVNELNRELNEEQKKKAAAF*
Ga0137367_103577723	3300012353	Vadose Zone Soil	VTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA*
Ga0137366_106227102	3300012354	Vadose Zone Soil	MTQDARKDWRNLCREAVAEKDPAKLIAIVDELNRELDKEQKKKAAVFLQKVDQ
Ga0137371_108881232	3300012356	Vadose Zone Soil	DWSIRCLEAVSQRGPDKVIAVVDELNRELDEEQKKKAAVFLQKIDKKTA*
Ga0137384_103804421	3300012357	Vadose Zone Soil	MTQGARKDWRNLCREAVAERDPAKLIAMVNELNRELDEEQEKKAAAVQQRVDKKTA*
Ga0137385_103901693	3300012359	Vadose Zone Soil	MTHDARKDWRDLCREAVAESDTAKLIANENELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0137360_118933491	3300012361	Vadose Zone Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKK
Ga0137361_101975963	3300012362	Vadose Zone Soil	MPGKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA*
Ga0134055_12635051	3300012401	Grasslands Soil	SMTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRKA*
Ga0134081_100276093	3300014150	Grasslands Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLRKIDKKRA*
Ga0066667_106985591	3300018433	Grasslands Soil	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA
Ga0066667_107439331	3300018433	Grasslands Soil	MIQDARKDWRKLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLQKVDQKTA
Ga0066667_110073021	3300018433	Grasslands Soil	DARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAAFRQK
Ga0066662_102163174	3300018468	Grasslands Soil	MIQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLQKVDQKTA
Ga0066662_106137231	3300018468	Grasslands Soil	DARKDWRNLCREAVSERDPYKLIAIVDELNRQLDEEQKKKAAVFLQKIDKKTA
Ga0066662_118285842	3300018468	Grasslands Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA
Ga0066662_121701792	3300018468	Grasslands Soil	MTQDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAAFRQK
Ga0137408_10120293	3300019789	Vadose Zone Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVFL
Ga0207684_100241073	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDARKDWRNLCREAVAERDPAKLMAIVNEINRQLNEEQKKKAAVFLQKVDKKTA
Ga0209234_10069315	3300026295	Grasslands Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209236_11678962	3300026298	Grasslands Soil	YNIRVYFFRFWEASMTQDARKEWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209236_11735291	3300026298	Grasslands Soil	VTQDARKDWRNLCREAVSERDPYKLIAIVDELNRELDEEQKKKAAVFLQKIDKKTA
Ga0209238_11558121	3300026301	Grasslands Soil	DWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209265_11536582	3300026308	Soil	SMTQDARKNWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIDKKRA
Ga0209472_10450032	3300026323	Soil	VTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209472_11205834	3300026323	Soil	MTQDARKDWRDLCREAVAKTDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209801_10042004	3300026326	Soil	MTHDARKDWRDLCREAVAESDPAKLIAIVNELNRELDEEKKKKAAVFLQKIEK
Ga0209801_11123772	3300026326	Soil	MTQDARKDWRNLCREAVSERDPYKLIAIVDELNRQLDEEQKKKAAVFLQKIDKKTA
Ga0209266_10219944	3300026327	Soil	MTQDAQRLGRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209802_10125734	3300026328	Soil	MTQDARKDWRNLCREAVAERDPAKLIAIVNELNRELDEEQKKKAAVFLQKVDQKTA
Ga0209802_12025631	3300026328	Soil	SMIQDARKDWRNLCREAVAERDPAKLIAIVDELNRELDEEQKKKAAVFLKKVDQKTA
Ga0209802_12703911	3300026328	Soil	TQDARKDWRNLCREAVSERDPYKLIAIVDELNRQLDEEQKKKAAVFLQKIDKKTA
Ga0209159_10387924	3300026343	Soil	MTQDARKDWRDLCREAVAETNPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209059_10128937	3300026527	Soil	MAQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209806_10422821	3300026529	Soil	YNIRVYFFRFWEASMTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209056_106583652	3300026538	Soil	ASMTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVYLQQIDKRRA
Ga0209156_100068407	3300026547	Soil	MTQDARKDWRDLCREAVAETDPARLIAIVNELNRELDEAQKKKAAVSLQQIDKRKA
Ga0209161_101534592	3300026548	Soil	MTHDARKDWRDLCREAVAEADPARLIAIVNELNRELDEAQKKKAAVYL
Ga0209180_100933162	3300027846	Vadose Zone Soil	MTHDARKDWRDLCRAAVAESDPAKLIAIVNELNRELDEEQKKKAAALLQK
Ga0209180_101377711	3300027846	Vadose Zone Soil	MTQDARKDWRNLCREAVAERDPYKLIAIVDELNRELDEEKAAVFLQKIDKKTA
Ga0137415_107360481	3300028536	Vadose Zone Soil	MTQDARKDWRDLCQEAVAETDPARLIAIVNELNRELDEAQKKKAAVFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096984

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences