NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096969

Metagenome / Metatranscriptome Family F096969

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096969
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 50 residues
Representative Sequence VATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGEDTD
Number of Associated Samples 97
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 82.69 %
% of genes near scaffold ends (potentially truncated) 98.08 %
% of genes from short scaffolds (< 2000 bps) 95.19 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.231 % of family members)
Environment Ontology (ENVO) Unclassified
(36.538 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.423 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1JGI1027J12803_1073637392
2Ga0066684_107782631
3Ga0066678_104997962
4Ga0065715_100444402
5Ga0065715_105380372
6Ga0070676_102111011
7Ga0066388_1058164351
8Ga0070667_1020220381
9Ga0066681_106604471
10Ga0066681_108334591
11Ga0070706_1012768521
12Ga0070707_1015492582
13Ga0070665_1026587091
14Ga0070704_1019421592
15Ga0066695_105256382
16Ga0066661_105191611
17Ga0068856_1009096101
18Ga0066905_1004283772
19Ga0066905_1005795141
20Ga0066903_1030880822
21Ga0068862_1023851211
22Ga0070717_104453881
23Ga0066651_103460992
24Ga0075417_102756782
25Ga0066665_116994851
26Ga0075425_1002395171
27Ga0099791_104106512
28Ga0099829_106958621
29Ga0111539_131883541
30Ga0111539_132956081
31Ga0111538_133844882
32Ga0105073_10159222
33Ga0126312_105038832
34Ga0126382_101724273
35Ga0099796_102056231
36Ga0105239_126411902
37Ga0126381_1039684682
38Ga0126383_135528701
39Ga0134127_100586631
40Ga0134122_106031943
41Ga0134121_105713371
42Ga0137393_108702502
43Ga0137463_13688291
44Ga0137363_117601102
45Ga0137360_116513182
46Ga0137361_115350032
47Ga0157333_10389411
48Ga0137358_102938963
49Ga0157309_101379102
50Ga0137394_112825262
51Ga0164301_114702132
52Ga0126369_117812202
53Ga0157369_121687402
54Ga0163162_106142913
55Ga0157376_101929931
56Ga0137405_12119201
57Ga0182034_118548002
58Ga0184635_102170331
59Ga0184609_102008892
60Ga0193713_10384363
61Ga0193725_11337541
62Ga0193727_10164364
63Ga0193727_11560632
64Ga0193728_11206491
65Ga0193693_10726512
66Ga0193730_11597921
67Ga0193755_11135091
68Ga0193755_11757091
69Ga0193749_10885282
70Ga0193750_10022921
71Ga0193694_10093081
72Ga0207697_105450851
73Ga0210094_10261011
74Ga0207688_108645851
75Ga0207699_111677991
76Ga0207660_114900882
77Ga0207681_114991111
78Ga0207687_107159272
79Ga0207706_103555443
80Ga0207706_111442001
81Ga0207679_102558243
82Ga0209468_10338831
83Ga0209268_11140452
84Ga0209472_10288311
85Ga0209470_11114931
86Ga0209378_11161621
87Ga0209056_101661433
88Ga0209161_101585173
89Ga0208344_1008112
90Ga0209974_100342311
91Ga0307287_103930011
92Ga0307296_100851771
93Ga0307312_106475902
94Ga0307308_101282483
95Ga0075377_100119223
96Ga0075405_120582651
97Ga0170823_150603301
98Ga0170820_132492311
99Ga0310813_111852331
100Ga0306925_119470222
101Ga0318520_103444281
102Ga0306926_111533652
103Ga0307471_1005540081
104Ga0306920_1010796252
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.18%    β-sheet: 0.00%    Coil/Unstructured: 62.82%
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Variant

5101520253035404550VATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGEDTDSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Natural And Restored Wetlands
Soil
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Groundwater Sand
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
19.2%9.6%2.9%3.8%15.4%2.9%3.8%3.8%4.8%4.8%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10736373923300000955SoilVSTRTSRFPLENFDSQRWNRLKTILGEALEQNSSAARIALVEQRCGEDTDLLEEAES
Ga0066684_1077826313300005179SoilVTTKTNRFGQGKVDPQRWDRLKTILGEALEQNSSAARIAL
Ga0066678_1049979623300005181SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIAL
Ga0065715_1004444023300005293Miscanthus RhizosphereLQFSVATKSTEFRQGNIDPQRWDRLKTILGEALEQNSSAARIALVER
Ga0065715_1053803723300005293Miscanthus RhizosphereVATKTTRFGQANTDPQRWDRLKTILGDALEQNSLADRMAFVEKSCGGDTDLLGEA
Ga0070676_1021110113300005328Miscanthus RhizosphereVATNTTQFGQGNIDPHRWDRLKTILGEALEQNSSAARIALVERCCG
Ga0066388_10581643513300005332Tropical Forest SoilVATKTTRFGQGNFDPQRWNRLKTVLGEALEQKSSAARIALVERRCGQDTDLLEEA
Ga0070667_10202203813300005367Switchgrass RhizosphereVATKTTRFRQGNIDPQHWDRLKTILGEALEQNSSAARIALVER
Ga0066681_1066044713300005451SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQDSSAARIALVER
Ga0066681_1083345913300005451SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQDSSAARIALVERRCGEDTDLLEEA
Ga0070706_10127685213300005467Corn, Switchgrass And Miscanthus RhizosphereVATKSTEFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVEKRCGQDTDLLEEAES
Ga0070707_10154925823300005468Corn, Switchgrass And Miscanthus RhizosphereVSTKTTQFGQGNIDPRRWDRLKIILGEVLEQNSSAARIALVERR
Ga0070665_10265870913300005548Switchgrass RhizosphereVTTRTTRFRQEKIDPQRWDRLKTILGEALEQNSSSARIALVEKRCGQDTDLLEEAES
Ga0070704_10194215923300005549Corn, Switchgrass And Miscanthus RhizosphereMSTKTTRFRQEKIDPQRWDRLKTILGEALEQNSSAARIALVEQRCG
Ga0066695_1052563823300005553SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVEQRCGQDTDLLEEAESLL
Ga0066661_1051916113300005554SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQDSSAARIALVERRCGEDTD
Ga0068856_10090961013300005614Corn RhizosphereVATKTTRFRQGNIDPQHWDRLKIILGEALEQNSSAA
Ga0066905_10042837723300005713Tropical Forest SoilMPTRTTRFRQGNIDPQRWDRLKTILCEALEQNSSAARIAVVERRCGHDTDLLEEAESLLV
Ga0066905_10057951413300005713Tropical Forest SoilVATKITRFSQGNIDPQRWDRLKTILGEALEQSSSAARTALVERRCGQDT
Ga0066903_10308808223300005764Tropical Forest SoilVATNTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIA
Ga0068862_10238512113300005844Switchgrass RhizosphereVATNTTQFGQGNIDPHRWDRLKTILGEALEQNSSAARIALVERRCG
Ga0070717_1044538813300006028Corn, Switchgrass And Miscanthus RhizosphereVTTRTTRFRQAKIDPQRWDRLKTILGEALEQNSSSARIALVEKRCGHDTDLLEEAE
Ga0066651_1034609923300006031SoilVATNTTQLGQGNIDPERWDRLKTILGEALEQHSSAGRIALVERRCGQDTD
Ga0075417_1027567823300006049Populus RhizosphereVATNTTQFGQENIDPQRWNRLKTILGEALEQNSSAARIAVVEQRCGQDT
Ga0066665_1169948513300006796SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQDSSAARIALVERRCGEDTDLLEEAESL
Ga0075425_10023951713300006854Populus RhizosphereVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIAW
Ga0099791_1041065123300007255Vadose Zone SoilVATNTTRFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVERRCGQDTDLLEE
Ga0099829_1069586213300009038Vadose Zone SoilVSTKTTRFRQGNIDPQRWDCLKNILGEALEQNSSAARMALVERRCGQDTDLLEEAGSL
Ga0111539_1318835413300009094Populus RhizosphereVATNTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIAFV
Ga0111539_1329560813300009094Populus RhizosphereVATKTTRFRQGNIDPQHWDRLKIILGEALEQNSSAARIALVEQRCGQDTDLLEE
Ga0111538_1338448823300009156Populus RhizosphereVATRTTRFPQGTIDPQRWNRLKTILGEALEQNSSAARIALVETRCGQDTDLLEEAESLL
Ga0105073_101592223300009802Groundwater SandVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGQDTDLLEEAE
Ga0126312_1050388323300010041Serpentine SoilVVAKSTEFGQGNIDPQRWDRLKTILGEALEQNSSAARTAVVERRCGEDTHLLE*
Ga0126382_1017242733300010047Tropical Forest SoilVATNTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVEKR
Ga0099796_1020562313300010159Vadose Zone SoilVATKTNRFGQGNIDPQRWDRLKIILGEALEQNSSGARITLVEQRCGQDTDLLEEAESLLD
Ga0105239_1264119023300010375Corn RhizosphereVATKTTRFGQANTDPQRWDRLKTILGDALEQNSLADRMAFVEKSCGGDTDLLGEAEALLA
Ga0126381_10396846823300010376Tropical Forest SoilMITRTTRFRQGNIDPQHWDRLKTILGEALEQNSSAARFALIETRCGEDTD
Ga0126383_1355287013300010398Tropical Forest SoilVITRATRFRQGNIDPQRWDRLKTILGEALEQNSSAARIALVERCCGQDTDLLEEAESL
Ga0134127_1005866313300010399Terrestrial SoilVATKTTQFGQANIDPQRWNRLKTILGEALEENTSAA
Ga0134122_1060319433300010400Terrestrial SoilVSTKTTRFRQGNIDPQRWDRLKIILGEALEQNSSAARIALVE
Ga0134121_1057133713300010401Terrestrial SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCAQD
Ga0137393_1087025023300011271Vadose Zone SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIALVERRCGEDTDLLEEAES
Ga0137463_136882913300011444SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARI
Ga0137363_1176011023300012202Vadose Zone SoilMATRTTRFGQWNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGQDTDLLEEAESLL
Ga0137360_1165131823300012361Vadose Zone SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIALVERRCGEDTDLLEEA
Ga0137361_1153500323300012362Vadose Zone SoilVTTRTTRFRQEKVDPQRWDRLKTILGEALEQNSLAARIALVEKRCGQDTDLLEEAESL
Ga0157333_103894113300012484SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARGALVERRCGEDTDLLEEAESLL
Ga0137358_1029389633300012582Vadose Zone SoilVTTNATRFGQGNIDPRRWDRLKTILGEALEQNSSAARIALVERRCGQDTDLLEEAE
Ga0157309_1013791023300012895SoilVTTKTTRFRQGNIDPQRWDRLKTILGEALEQNASAARIALVEQRCGQDTDLVE
Ga0137394_1128252623300012922Vadose Zone SoilVATKSTEFGQGNIDPQRWDRLKTILGEALEQNSSAAR
Ga0164301_1147021323300012960SoilVTTRTTRFPQEKIDPQRWDRLKTILGEALEQNSSAARIAFVERRCGQ
Ga0126369_1178122023300012971Tropical Forest SoilVATNTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVE
Ga0157369_1216874023300013105Corn RhizosphereVTTRTTRFRQEKIDPQRWDRLKTILGEALEQNSSAARIALVEQRCGED
Ga0163162_1061429133300013306Switchgrass RhizosphereVAANTTQFGQGNIDPHRWDRLKTILGEALEQNSSAARIALVERRCGEDTDLLQEAESLL
Ga0157376_1019299313300014969Miscanthus RhizosphereVATKTTRFRQGNIDPQHWDRLKIILGEALEQNSSAALIALVEQRCGQD
Ga0137405_121192013300015053Vadose Zone SoilVATKTTQFGQGNIDPQRWDHLKTILGEALEENSSAARIALVERRCGEDTD
Ga0182034_1185480023300016371SoilVATKTTRFRQTNLDAQRWDLLKTILGEALEQDSSAARIALLERR
Ga0184635_1021703313300018072Groundwater SedimentVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGEDTD
Ga0184609_1020088923300018076Groundwater SedimentMSTKTTRFRQEKIDPQRWDRLKTILGEALEQNSSADRIALVER
Ga0193713_103843633300019882SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIALVERRCGEDTDLLEEAESLLV
Ga0193725_113375413300019883SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVE
Ga0193727_101643643300019886SoilVAINTTQFGQGNIDPQRWDRLKTILGEALEENSSAARIALVEKR
Ga0193727_115606323300019886SoilVATKTTRSGNIDPQRWNRLKTILGEALEQNSSAARVAVVEQRCGQDTDLLYEA
Ga0193728_112064913300019890SoilMATRTTRFRQEKVDPQRWDRLKTILGEALEQNSSAARIALVERRCGED
Ga0193693_107265123300019996SoilVATKSTEFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERCCGEDTD
Ga0193730_115979213300020002SoilVTTNATRFGQGNIDPRRWDRLKTILGEALEQNSSAARIALVERRCGQDTDLLEE
Ga0193755_111350913300020004SoilVATKSTEFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERCCGQDTD
Ga0193755_117570913300020004SoilVATRTTRFRQGNIDPQHWDRLKTILGEALEQNSSAARIALVEKRCGEDTDLLEEAESLL
Ga0193749_108852823300020010SoilMPTKTTRFRQTNLDPQRWNLLKTILGEALEQNSSAARIVLLES
Ga0193750_100229213300021413SoilMATRTTRFRQEKVDPQRWDRLKTILGEALEQNSSAARIALVERRCGQD
Ga0193694_100930813300021415SoilMATKSTEFRQGNIDPQRWDRLKTILGEALEQNSSAARIALVERCCGEDTDLLEEAESL
Ga0207697_1054508513300025315Corn, Switchgrass And Miscanthus RhizosphereVATRTTRFRQENIDPQRWDRLKTILGEALEQNSLAARIA
Ga0210094_102610113300025549Natural And Restored WetlandsVATKSTEFGQGNIDPQRWDRLKTILGEALEQGSSAARIALVERRCGEDTDLLEEAESLL
Ga0207688_1086458513300025901Corn, Switchgrass And Miscanthus RhizosphereVTTRTTRFRQEKIDPQRWDRLKTILGEALEQNSSSARIALVEKRCGQDTDLLEE
Ga0207699_1116779913300025906Corn, Switchgrass And Miscanthus RhizosphereMATKITRFRQEKVDPQRWDRLKTILDEALEQNSSAARIALVERRCGQDTDLLEEA
Ga0207660_1149008823300025917Corn RhizosphereVATKTTRFGQANTDPQRWDRLKTILGDALEQNSLADRMAFVEKSCGGDTDLLGEAEALLAEAE
Ga0207681_1149911113300025923Switchgrass RhizosphereVATKTTRFGQGKIDPQRWDRLKTILGEALEQNSSA
Ga0207687_1071592723300025927Miscanthus RhizosphereVTVKTTRFRQGTIDPQRWDRLKTILGQALEQNSSAARIAFVERCCGQDFDLLEEAESLL
Ga0207706_1035554433300025933Corn RhizosphereVATKTTRFGQANTDPQRWDRLKTILGDALEQNSLADRMAFVEKSCGQDTDLLE
Ga0207706_1114420013300025933Corn RhizosphereVATNTTQFGQGNIDPHRWDRLKTILGEALEQNSSAARIALVERCCGEDTDLLQE
Ga0207679_1025582433300025945Corn RhizosphereVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERCCGQDTDLLEEAESLL
Ga0209468_103388313300026306SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVERQCGQDTDLLEEAESLLVEAEALLKE
Ga0209268_111404523300026314SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERR
Ga0209472_102883113300026323SoilVATNTTQFGQGNIDPQRWDRLKTILGEALEENSSAARIALVERRCGQDTDLLEEAE
Ga0209470_111149313300026324SoilVATKTTRFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVER
Ga0209378_111616213300026528SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQDSSAAR
Ga0209056_1016614333300026538SoilVSTKTTRFGQGNIDPQRWDRLKTILGEALEQNSSAVRIALVERRCGED
Ga0209161_1015851733300026548SoilVSTKTTQFGQGNIDPRRWDRLKIILGEALEQNSSAARIALVERRCGEDTDLLEEAESL
Ga0208344_10081123300026716SoilVATKTTRFGQGNIDPQRWDRLKTILGEAFEQNSSAARIALVERRCGQDTDLLEEA
Ga0209974_1003423113300027876Arabidopsis Thaliana RhizosphereVATKTTRFGQGKIDPQRWDRLKTILGEALEQNSSAARIALVETRC
Ga0307287_1039300113300028796SoilVATKFTDFGQGNSDPQRWDRLKTILGEALEQNSSAA
Ga0307296_1008517713300028819SoilVTTKTTRFGQGNIDPQRWDRLKTILGEALEENSSAARIALVEKRCGQDTD
Ga0307312_1064759023300028828SoilVATRTSRFQQGNIDPQRWDRLKTILGEALEQKSSAARIALVERRCGQDTDLLEEAE
Ga0307308_1012824833300028884SoilVATNTTQFRQGNIDPQRWDRLKTILGEALEENSSAARIALVEKRC
Ga0075377_1001192233300030844SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIAFVERRCGEDTDLLEEAESLLVEAE
Ga0075405_1205826513300030847SoilVAAKTTRFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVERQCGQDTDLLEEAESLLVEAEALL
Ga0170823_1506033013300031128Forest SoilVSTKTTRFGQGNIDPRRWDRLKIILGEALEQNSSAARIALVERRCCQDTDLLEEAESLL
Ga0170820_1324923113300031446Forest SoilVSTKTTRFRQGNIDPQRWDRLKTILGEALEQNSSAARIA
Ga0310813_1118523313300031716SoilVSTRTTRFGQGNIDPQRWDRLKTILGEALEQDSSAARIALVEQRCGQDTDL
Ga0306925_1194702223300031890SoilVRTKTTRFRENNIDPQRWDLLKTILGEALEQNSSAARFALIETRCGEDTDL
Ga0318520_1034442813300031897SoilVATRTSRFGHGNIDSQRWDRLKRILGEALEQNSSGARITLVERRCRQDTDLLEEA
Ga0306926_1115336523300031954SoilVATRTSRFQEGNIDPQRWDRLKTILGEALEQNSSADRIALVEQRCGEDTDLLEEAE
Ga0307471_10055400813300032180Hardwood Forest SoilVATKTTQFGQGNIDPQRWDRLKTILGEALEQNSSAARIALVERRCGEDTDLLEEAESLL
Ga0306920_10107962523300032261SoilMATKTTQFGRGNIDPQRWDRLKTILGEALEQNSSAARIAVVEQRCGHDTDLFEEAS


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