Basic Information | |
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Family ID | F096952 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 44 residues |
Representative Sequence | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFLL |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 37.50 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 93.27 % |
Associated GOLD sequencing projects | 96 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.115 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (58.654 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 50.72% β-sheet: 0.00% Coil/Unstructured: 49.28% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Soil Soil Agricultural Soil Permafrost Soil Soil Hardwood Forest Soil Soil Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Arabidopsis Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere Populus Rhizosphere Rhizosphere Miscanthus Rhizosphere Rhizosphere Soil Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPKNP_09226120 | 2070309009 | Soil | MNLRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLVVPL |
ICCgaii200_10600761 | 2228664021 | Soil | MNLRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLVVPLAAGG |
C688J13580_10356643 | 3300001205 | Soil | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLL |
JGI25405J52794_100191651 | 3300003911 | Tabebuia Heterophylla Rhizosphere | MNVRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLGIPLA |
Ga0062593_1024656581 | 3300004114 | Soil | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFLLIVPLA |
Ga0063455_1002034053 | 3300004153 | Soil | MFRDLYSNLTAREQRALRWSAAATAAVLWLTTAWADPWLLLGVPVVA |
Ga0063455_1002665361 | 3300004153 | Soil | MIHDLYSSLTAREQRALRWSGAATAAALWLSTAWADPWVLVSVPVIAGAFW |
Ga0062595_1011034821 | 3300004479 | Soil | MFSDLSDLYTNLTAREQRALRWSAAATAAALWLSTAWTDPWLLLA |
Ga0062594_1030736021 | 3300005093 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAIPVLAGGLWVYHR |
Ga0066673_108248642 | 3300005175 | Soil | MFRDLYTNLSAREQRAFKWSAAATAAALWLSTAWTDPWLLLAVPL |
Ga0070666_107741341 | 3300005335 | Switchgrass Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFLLIVPLTGAGFWFYR |
Ga0070669_1007748443 | 3300005353 | Switchgrass Rhizosphere | MISDLYTSLTAREQRAFRWSAAAAAVALWLSMAWMDPMILLTVPL |
Ga0070685_108926721 | 3300005466 | Switchgrass Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFLLIVPL |
Ga0070704_1003166763 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRDLYTSMTAREQRAIRWSAAATAAALWLSTAWADPRFLL |
Ga0066698_101623351 | 3300005558 | Soil | MFRDLYSNMTAREQRALRWSAAATAVALWLSTAWADPWLLLAVPLSG |
Ga0068855_1001010041 | 3300005563 | Corn Rhizosphere | MISDLYTSLTAREQRAFRWSAAAAAVALWLSMAWMDPMILLTVPLIGGAF |
Ga0068855_1003688611 | 3300005563 | Corn Rhizosphere | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADP |
Ga0066708_105584581 | 3300005576 | Soil | MFRDLYTNLNTREQRALRWSAAATAAALWLSTAWADPWLLL |
Ga0068856_1009078241 | 3300005614 | Corn Rhizosphere | MFSELSDLYSNLTAREQRALRWSAAATAAVLWLATAWTDPWLLLAVP |
Ga0066903_1018212453 | 3300005764 | Tropical Forest Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLGIPLAAGGFWFYRRR |
Ga0070717_121383211 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MIHDLYTSLTAREQRAVRWSAAATAAALWLSTAWA |
Ga0066659_113243471 | 3300006797 | Soil | MFRDLYTNLNAREQRALRWSAAATAAALWLSTAWADPW |
Ga0075436_1001158571 | 3300006914 | Populus Rhizosphere | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAW |
Ga0079219_103400603 | 3300006954 | Agricultural Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWA |
Ga0075435_1010070791 | 3300007076 | Populus Rhizosphere | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLGIPLAAGGFWFYRR |
Ga0114129_119673132 | 3300009147 | Populus Rhizosphere | MISDLYTSLTAREQRASRWSAAATAVALWLSMAWADPKFLLTVPLIGGGFYLYRI |
Ga0075423_118446361 | 3300009162 | Populus Rhizosphere | MISDLYTSLTAREQRAFRWSAAATAVALWLSMAWADPKFLL |
Ga0134082_103438611 | 3300010303 | Grasslands Soil | MFRDSYTNLTAREQRALRWSAAATAAALWLSTAWADPWL |
Ga0134084_102616121 | 3300010322 | Grasslands Soil | MFRDLYSNMTAREQRAFRWSAAATAVALWLSTAWADPWLLLAVPLSAGA |
Ga0134065_103453303 | 3300010326 | Grasslands Soil | MFRDLYSNMTAREQRALRWSAAATAVALWLSTAWA |
Ga0134065_103505141 | 3300010326 | Grasslands Soil | MFSDLYSNLTAREQRALRWSAAATAAALWLSTAWADPWL |
Ga0134063_101839863 | 3300010335 | Grasslands Soil | MFRDLYTNLSAREQRAFKWSAAATAAALWLSTAWT |
Ga0134125_102414881 | 3300010371 | Terrestrial Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAIPV |
Ga0134127_125375451 | 3300010399 | Terrestrial Soil | MFRDLYTNLSAREQRAFKWSAAATAAALWLSTAWTDPW |
Ga0134122_111632963 | 3300010400 | Terrestrial Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLSMAWMDPMILLTVPLIGG |
Ga0120161_10632073 | 3300012005 | Permafrost | MISDFYSSLTSREQRALRWSAAATAVALWLATAWADPWIL |
Ga0137383_106058931 | 3300012199 | Vadose Zone Soil | MINDLYSSLTSREQRALRWSAAATAVALWLATAWADPWVLVTVP |
Ga0137374_100961351 | 3300012204 | Vadose Zone Soil | MMFRDLYSNLTAREQRAFKWSAGATAAALWLSTAWTDPWL |
Ga0137386_107468721 | 3300012351 | Vadose Zone Soil | MMREFFDDLTSREQRALGWSAVAVAAALWLATAWTDPWLLLGV |
Ga0137366_106362333 | 3300012354 | Vadose Zone Soil | MMFRDLYSNLTAREQRAFKWSAGATAAALWLSTAWTDPWLLLVVPASAAAFFVYR |
Ga0157326_10152601 | 3300012513 | Arabidopsis Rhizosphere | MISDLYTSLTAREQRALRWSAAATAVALWLSMAWADPKFLLTVP |
Ga0157303_100969841 | 3300012896 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLIVVPLAAGGFW |
Ga0157301_100872653 | 3300012911 | Soil | MNFRDLYESLTAREQRALRWSAAAAAVALWLSTAWADPRFLIV |
Ga0162651_1000147893 | 3300012938 | Soil | MMRDLYSSLTPREQRAIRWSAAATAAALWLSTAWADPWFLL |
Ga0164300_104829813 | 3300012951 | Soil | MIRDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLLIVPLAGAGFWFYR |
Ga0164300_109435561 | 3300012951 | Soil | MFSELNDLYANLTAREQRALRWSAAATAAALWLSTAWTDP |
Ga0164298_101704833 | 3300012955 | Soil | MIRDLYTSLTAREQRAIRWSAAATAAALWLSTAWA |
Ga0164303_111202342 | 3300012957 | Soil | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLLIVPLAGAGFWFYRR |
Ga0164302_108824063 | 3300012961 | Soil | MIRDLYTSLTAREQRAIRWSAAAPAAALWLSTAWADP |
Ga0164308_116670411 | 3300012985 | Soil | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWAD |
Ga0164304_106967513 | 3300012986 | Soil | MIQDLYSSLTAREQRALRWSAAAAAAALWLSTAWA |
Ga0164306_106571563 | 3300012988 | Soil | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLLIVPLAGAAFWFYR |
Ga0164305_111025591 | 3300012989 | Soil | MFRDLYTNLTAREQRALRWSAAASAAVLWLATAWTDPWLLLAVPLVAGAFFAYRA |
Ga0157378_124630202 | 3300013297 | Miscanthus Rhizosphere | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAIPVLAGGLWVYHRR |
Ga0120149_11955802 | 3300014058 | Permafrost | MINDLYSSLTPREQRAFRWSAAATAVALWLATAWAD |
Ga0182005_11687901 | 3300015265 | Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSAAWADPRFLLIVPLAGAGFWF |
Ga0134072_103304993 | 3300015357 | Grasslands Soil | MFRDLYSNLTAREQRALRWSAAATAAALWLATAWADPWL |
Ga0132258_114228281 | 3300015371 | Arabidopsis Rhizosphere | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLIVVPLAA |
Ga0132256_1003937541 | 3300015372 | Arabidopsis Rhizosphere | MMNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLVIPLAAGGFWFYRR |
Ga0132257_1008466201 | 3300015373 | Arabidopsis Rhizosphere | MNFRDLYESLTAREQRALRWRAAATAVALWLSTAWADPRFLLGIPL |
Ga0132255_1011207111 | 3300015374 | Arabidopsis Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFLL |
Ga0132255_1046798841 | 3300015374 | Arabidopsis Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWADPRFL |
Ga0187786_100947591 | 3300017944 | Tropical Peatland | MLRDLYSNLTAREQRALRWSAAATAVALWLSVAWADLWLL |
Ga0184604_102386141 | 3300018000 | Groundwater Sediment | RRPSVMMRDLYSSLTAREQRAIRWSAAATAAALWLSTA |
Ga0187788_100002091 | 3300018032 | Tropical Peatland | MFSDLYSNLTAREQRALRWSAAATAAALWLSTAWADPWLLLAVPLA |
Ga0184621_101817203 | 3300018054 | Groundwater Sediment | MIQDLYSSLTAREQRALRWSAAATAVALWLSTAWADPW |
Ga0193730_11758092 | 3300020002 | Soil | MIHDLYSSLTAREQRAVRWSAAATAAALWLSTAWADPWFLVTVPMIAGGF |
Ga0247785_10161021 | 3300022889 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLGIPLA |
Ga0247788_11324441 | 3300022901 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLGI |
Ga0247669_10058241 | 3300024182 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAIPVLA |
Ga0247681_10158403 | 3300024310 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAIP |
Ga0207680_108919271 | 3300025903 | Switchgrass Rhizosphere | MIRDLYTSLTAREQRAVRWSAAATAAALWLSTAWA |
Ga0207704_108973113 | 3300025938 | Miscanthus Rhizosphere | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLLIVPLAGA |
Ga0207679_107016513 | 3300025945 | Corn Rhizosphere | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLA |
Ga0209153_12617102 | 3300026312 | Soil | MFRDLYTNLNAREQRALRWSAAATAAALWLSTAWADPWLLLAVPLAGA |
Ga0209267_13127312 | 3300026331 | Soil | MFRDLYTNLSAREQRAFKWSAAATAAALWLSTAWTDPWLLLAVPLAAVGFFV |
Ga0209056_107292772 | 3300026538 | Soil | MFRDLYTNLNAREQRALRWSAAATAAALWLSTAWADPWLLLAVPLAGAGFFVY |
Ga0209577_101882671 | 3300026552 | Soil | MFRDLYTNLSAREQRAFKWSAAATAAALWLSTAWTAP |
Ga0207981_11041661 | 3300027560 | Soil | MLRDLYSNLTAREQRALRWSAAATAVALWLSVAWADLWLLLAVPL |
Ga0247822_117790242 | 3300028592 | Soil | MIHDLYTSLTAGEQRAIRWSAAATAAALWLSTAWADPR |
Ga0307293_100149081 | 3300028711 | Soil | MINDLYSSLTAREQRALRWSAAATAVALWLSTAWADPW |
Ga0307313_100239713 | 3300028715 | Soil | MIQDLYSSLTAREQRALRWSAAATAVALWLSTAWADPWILI |
Ga0307315_101823573 | 3300028721 | Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLAMAWADPMILLTVPLIGG |
Ga0307306_102582791 | 3300028782 | Soil | MIHDLYSSLTAREQRAVRWSAAATAAALWLSTAWADP |
Ga0307287_102655713 | 3300028796 | Soil | MIQDLYSSLTAREQRALRWSAAATAVALWLSTAWADPWILITVP |
Ga0307292_100391983 | 3300028811 | Soil | MFRDLYSNLTAREQRALRWSAAATAAALWLATAWADPWLLLA |
Ga0307296_100959181 | 3300028819 | Soil | MIHDLYTSLTAREQRAIRWSAAATAAALRLSTAWA |
Ga0307312_105271853 | 3300028828 | Soil | MFRDLYSNLTAREQRALRWSAAATAAPLWLAPAWTHTRLLH |
Ga0307289_102783251 | 3300028875 | Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLAMAWADPMILLT |
Ga0307286_103117202 | 3300028876 | Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLAMAWADPM |
Ga0307278_100238064 | 3300028878 | Soil | MFRDLYSNLTVREQRALRWSAAATAAALWLATAWTDPRL |
Ga0307277_101525081 | 3300028881 | Soil | MIGDMYSSLTAREQRALRWSAGATAAALWLTTAWADPWILLTVP |
Ga0307308_106424752 | 3300028884 | Soil | MINDLYSSLTAREQRALRWSAAATAVALWLSTAWADPWILITVPLIGAA |
Ga0268241_101571212 | 3300030511 | Soil | MNFRDLYESLTAREQRALRWSAAATAAALWLSTAWTDPRFLVVVPLAVGGFWLYRR |
Ga0307496_101215081 | 3300031200 | Soil | MINDLYSSLTAREQRALRWSAAATAVALWLSTAWADP |
Ga0307469_113908541 | 3300031720 | Hardwood Forest Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLSMAWADPKFLL |
Ga0310901_105044612 | 3300031940 | Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWADPRFLLAI |
Ga0310895_106853131 | 3300032122 | Soil | MNFRDLYDSLTAREQRALRWSAAATAVALWLATAWADPRFLLAIPVLAGGLW |
Ga0307470_116251142 | 3300032174 | Hardwood Forest Soil | MIHDLYTSLTAREQRAIRWSAAATAAALWLSTAWADPRFLLIVPLAGAAFW |
Ga0307471_1007061533 | 3300032180 | Hardwood Forest Soil | MFSDLYTNLTAREQRALRWSAAATAAALWLATAWADPWLLLAVPLAAA |
Ga0247829_111833813 | 3300033550 | Soil | MIRDLYTSMTAREQRAIRWSAAATAAALWLSTAWA |
Ga0247829_114294451 | 3300033550 | Soil | MISDLYTSLTAREQRAFRWSAAAAAVALWLSMAWMDPMILLTVPLIGGAFY |
Ga0373948_0161577_1_108 | 3300034817 | Rhizosphere Soil | MNFRDLYESLTAREQRALRWSAAATAVALWLATAWA |
Ga0373950_0161034_2_133 | 3300034818 | Rhizosphere Soil | MNVRDLYESLTAREQRALRWSAAATAVALWLSTAWADPRFLLGI |
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