Basic Information | |
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Family ID | F096819 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 58 residues |
Representative Sequence | MLLRIIEPGLSPELTGDLNRVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARFAAER |
Number of Associated Samples | 75 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 81.73 % |
% of genes near scaffold ends (potentially truncated) | 98.08 % |
% of genes from short scaffolds (< 2000 bps) | 95.19 % |
Associated GOLD sequencing projects | 69 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.29 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (99.038 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.654 % of family members) |
Environment Ontology (ENVO) | Unclassified (60.577 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.846 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.53% β-sheet: 0.00% Coil/Unstructured: 60.47% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.29 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Attine Ant Fungus Gardens Switchgrass, Maize And Mischanthus Litter Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
2NP_03230850 | 2170459020 | Switchgrass, Maize And Mischanthus Litter | MLLRIIEPGLPPELPGDLNGDQCPAAFHQGLLVAGAMDGAVMRATERDGEFVARFAAECPAVA |
AF_2010_repII_A1DRAFT_101190021 | 3300000597 | Forest Soil | MLLRIIEPGLSPELPGDLDGIDAGXLPPGLXVAGXMDGAVMRAAEGHSEFVARFAAERPRLQV |
Ga0062589_1012672722 | 3300004156 | Soil | LTIGRSAYLRIIAPRLSPELMSDLDGVDAGRLPPGLLVGGAMNRAVMRAAERDGE |
Ga0066388_1026207641 | 3300005332 | Tropical Forest Soil | MVEPGLLPKLTGDLDGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFVARLAAERPR |
Ga0008090_100996852 | 3300005363 | Tropical Rainforest Soil | MRLVTLLRIIESGLSPELTGDLNGIDAGRLPPGLLVAGAMDGAVMRAAERDGEFIARFAAERP* |
Ga0070708_1016225211 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | VTLLPIIEPGLSPELTGDLNGIDAGRLPPGLLIASAMDRPVMRAAERDGEFVARFAAE |
Ga0066689_106271322 | 3300005447 | Soil | VRILQIIAPGLSPELTGDLDRVDAGRLPPCLLVAGAMDRAVMRAAERDGEFVARF |
Ga0066905_1019244702 | 3300005713 | Tropical Forest Soil | MLLRIIESGLSPELTGDLNGVDAGRPPPRLLVAGAMDRPVMRAAERDGEFVARFAAERPWLQV |
Ga0066903_1019762261 | 3300005764 | Tropical Forest Soil | MVLPIIEPGLSPELPGDLDGVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARF |
Ga0066903_1058017062 | 3300005764 | Tropical Forest Soil | MLLRIIEPGLSPELAGDLNGVDAGRLPPGLLIAGAMDRAVMRAAERDGEFVARFAAERP |
Ga0066903_1068805291 | 3300005764 | Tropical Forest Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPGLLVAGAMDRPVMRAAERDGEFVARFA |
Ga0066903_1072304032 | 3300005764 | Tropical Forest Soil | MLLRIIELGLSPELAGDLNGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFVA |
Ga0075428_1025109572 | 3300006844 | Populus Rhizosphere | VHRNTRLLRIARIIEPGLPPELAGDFDGVDPGCRPPGLLIAGAMDRAMMRAAERDG |
Ga0111538_122343931 | 3300009156 | Populus Rhizosphere | LKIVRIIEPGLPPELTGDFDGVDPRRRPPGLLIAGAMDRAMMRAVERDGEFIS |
Ga0126380_122651771 | 3300010043 | Tropical Forest Soil | LPIIEPGLSPELTGDLNGVDAGRLPPGLLVASALDRPVMRAAERDGEFVASFA |
Ga0126384_113268151 | 3300010046 | Tropical Forest Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARF |
Ga0126384_116519372 | 3300010046 | Tropical Forest Soil | MLLRIIEPGLSPQVTGDLDGVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARFAA |
Ga0126373_104389913 | 3300010048 | Tropical Forest Soil | MLLRIIESGLSPELPGDLDGVDAGRLPPRLLVAGAMDRAVMRAAERDGEFVARFA |
Ga0126373_113186642 | 3300010048 | Tropical Forest Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARFA |
Ga0126373_125795051 | 3300010048 | Tropical Forest Soil | MLLRIIEPGLSPELAGDLNGVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARFA |
Ga0126378_119940341 | 3300010361 | Tropical Forest Soil | VTLLPIIEPGLSPELTGDLNGVDAGGLPPGLLVAGAMDRPVMRAAERDGEFVA |
Ga0126383_121197471 | 3300010398 | Tropical Forest Soil | MLLRITESGLSPELTGDLNGVDAGRLPPGLLVAGAMDGAMMRATERDGEFVAR |
Ga0126383_122027572 | 3300010398 | Tropical Forest Soil | MLLRIIDPGLSPELTGDLNWVDAGRLPPGLLVAGAMDRAMMRAAERDGEFVARFAAERPW |
Ga0126383_123772811 | 3300010398 | Tropical Forest Soil | MLLRIIESGLSPQLTGDLNGVDAGRLPPGLLVAGAMDGAMMRATERDGEFVAR |
Ga0126383_130372641 | 3300010398 | Tropical Forest Soil | MLLRIIEPGLSPELTGDLNGIDAGRLPPGLLVAGAMDRAVMRAAERDGEFVAR |
Ga0134122_124990651 | 3300010400 | Terrestrial Soil | LRIVRIIEPGLPPELTGGLDGVDAGSRPPGLLIAGAMNGAVMRAAERDSEFIAGLAAERP |
Ga0153974_11669441 | 3300012180 | Attine Ant Fungus Gardens | MLLPIIESGLSPELLGDLTGIDAGRLPPGLLVAGAMDGAVMRAAEGHGEFVARFAAECPR |
Ga0137374_105778302 | 3300012204 | Vadose Zone Soil | VCRESRLVTILRIAPRLSPELTSDLDGVDAGRLPPGLLIAGAMDGAVMRAAERDGEFVARFAA |
Ga0164301_106984283 | 3300012960 | Soil | MIWRIIEPGLSPELTGDLDGINAGRLPPGLLVAGAMDRTVMRAAERDGEFIAHFAAERPR |
Ga0164306_120270061 | 3300012988 | Soil | MILRIIEPGLSPELTGDFDGVDPGRRPPGLLIAGAMNGAVMRAAERDSEFIAGLAAE |
Ga0163162_130333091 | 3300013306 | Switchgrass Rhizosphere | VTIWRIIEPGLSPELTGDLDGVDAGRLPPGLLIAGAMDRAMMRAAERDGEFIA |
Ga0163163_123111632 | 3300014325 | Switchgrass Rhizosphere | LRIVRIIEPGLSPELTGGLDGIDAGRRPPGLLIAGAMNGAVMRAAERDSEFIAGLA |
Ga0157376_107733891 | 3300014969 | Miscanthus Rhizosphere | MRIIEPGLPPELTGDFDGVDPRRRPPGPLVASTMDRAVMRAAERNGEFIAHLAAERPRL |
Ga0182041_118173261 | 3300016294 | Soil | VTLLPIIEPGLSPELTGDLNGVDAGRFPPGLLVAGAMDRPVMRAAERDGEFVARFAAERPWL |
Ga0182041_122515241 | 3300016294 | Soil | MFLRIIESGLPPELTGDLHGIDAGRLPPRLLVPGAMDRAVMRAAERDGEFVARFAAERP |
Ga0182033_111254222 | 3300016319 | Soil | MLLRIIEPGLSPELPGDLDGIDAGCLPPGLFVAGAMDGAVMRAAEGHGEFVARFAAERP |
Ga0182033_119645712 | 3300016319 | Soil | MLLRIIESGLSPELPGDLDGVDAGRLPPRLLVAGAMDRAVMRAAERDGEFVARFAAERPWLQ |
Ga0182033_120399792 | 3300016319 | Soil | MLLRIIQPGLSPQLTGDLDGIDAGRRPPGLLVPGAMDGAMMRAAERDDEFVARFATERPRLQVTKM |
Ga0182035_104667192 | 3300016341 | Soil | MFLRIIESGLPPELTGDLHGIDAGRLPPRLLVPGAMDRAVMRAAERDGEFVARFAAERPWLQV |
Ga0182035_121471992 | 3300016341 | Soil | VTLLPIIEPGLSPELTGDLNGIDAGRLPPRLLVASAMDRPVMRAAERDGEFVARFAAERPWLQV |
Ga0182032_110804141 | 3300016357 | Soil | MFLRIIEPGLSPELTSDLNGIDAGRLPPGPFVAGAMDRAVMRAAERDGEFVARFAAER |
Ga0182032_117668881 | 3300016357 | Soil | VTLLPIPEPGLSPELTGDLNGVDAGRLPPGLLVASAMDRPVMRAAERDGEFVARFAAERP |
Ga0182034_106054082 | 3300016371 | Soil | MLLPIIESGLSPELTGDLNGIDAGRLPPGLLVAGAMDGAVMRAAERDGEFIARFAAERPWLQVT |
Ga0182034_107545881 | 3300016371 | Soil | MFLRIIEPGLSPELTSDLNGIDAGRLPPGPFVAGAMDRAVMRAAERDGEFVARFAA |
Ga0182034_117786562 | 3300016371 | Soil | VIILGTMQPGLSPELTGNLNGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFIACFA |
Ga0182040_115523182 | 3300016387 | Soil | MLLRIIESGLSPELTGDLNGVDAGGPPPRLLVAGAMDGAVMRAAERDGEFVAGFAAE |
Ga0182039_107274032 | 3300016422 | Soil | MLLPIIEPGLSPEMTGDLNGVDAGGLPPRLLVAGAMDGAVMRAAERDGEFVARFAAER |
Ga0126371_111369021 | 3300021560 | Tropical Forest Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPRLLVAGAMDGAMMRATERDGEFVARFAAERP |
Ga0222622_110680411 | 3300022756 | Groundwater Sediment | MRIVRIIEPGLPPELTGDFDGVDPGRRPPGLLIAGAMDRAMMRAAERDGEFIAGLAAERP |
Ga0207670_101168872 | 3300025936 | Switchgrass Rhizosphere | VRIIEPGLSPKLTGGLDGVDASRRPPGLLIAGAMNGAVMRAAERDSEFIA |
Ga0207677_123135481 | 3300026023 | Miscanthus Rhizosphere | LRIVRIIEPGLPPELTGDLERVDPGRRPPGLLVAGAMDRAVMRAAERHREFIAGLAAE |
Ga0209488_106421632 | 3300027903 | Vadose Zone Soil | MRIVRIIEPGLPPELTGDFDGVDPGRRPPGLLIAGAMDGAMMRAAERDGEFIAGLTAERPRLQ |
Ga0209526_100374681 | 3300028047 | Forest Soil | MRLQIIEPGLSPELTGDLDGIDAGRLPPRPLVAGAMDRAVMRAAERDGEFVARFAA |
Ga0307290_102796392 | 3300028791 | Soil | MRIVRIIEPGLPPELTGDFDGVDPGRRPPGLLVAGAMDRAMMRAAERDGEFIWPCGRA |
Ga0318534_107379682 | 3300031544 | Soil | MLLRIIEPGLPPELPGDLDWVDAVPGLLVAGAMDRAVMRAAERDRELVARFAAECPRLQITKM |
Ga0318528_105819271 | 3300031561 | Soil | MQPGLSPELTGNLNGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFIACFAAECPRLQITK |
Ga0318573_106153111 | 3300031564 | Soil | MMLLRIIEPGLSPELAGDLNGIDARRLPPGLLVAGAMDGAVMRAAERDGEFVARFA |
Ga0310915_107399562 | 3300031573 | Soil | MLLRIIEPGLPPELPGDLNGIDAGRLPPGPLVAGAMDGAVMRAAERDGEFVARFA |
Ga0318555_102798591 | 3300031640 | Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPGLLVAGAMDGAMMRATERDGEFVARFAAERPRSQVAKMM |
Ga0318542_100702981 | 3300031668 | Soil | MMLLRIIEPGLSPELAGDLNGIDARRLPPGLLVAGAMDGAVMRAAERDGEFVARFAPERPRLQ |
Ga0318542_104979752 | 3300031668 | Soil | MQPGLSPELTGNLNGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFIACFAAE |
Ga0318561_101359172 | 3300031679 | Soil | MMLLRIIEPGLSPELAGDLNGIDARRLPPGLLVAGAMDGAVMRAAERDGEFVARFAP |
Ga0318561_104348742 | 3300031679 | Soil | MFLRIIEPGLSPELTSDLNGIDAGRLPPGPFVAGAMDRAVMRAAERDGEFVARFAAERPWLQ |
Ga0306917_106887232 | 3300031719 | Soil | MLLPIIEPGLSPQLTGDLNGVDAGRLPPRLLVPGAMDGAVMRAAERDGEFVAGFAAERSWLQVA |
Ga0306917_111538992 | 3300031719 | Soil | VTLLPIIEPGLSPELTGDLNGVDAGRFPPGLLVAGAMDRPVMRAAERDGEFVARFAAERP |
Ga0318501_101460732 | 3300031736 | Soil | MLLRIIEPGLPPELPGDLNGVDADRLPPGLLVAGAMDRPVMRAAERDGEFVARFAAERPWLQVTK |
Ga0307468_1021313501 | 3300031740 | Hardwood Forest Soil | VRRESRPDLRTIAPSSSPELTGDLDGVDAGRPPPSLLVAGAMNRAVARAAKRDGELIAHFAAER |
Ga0306918_103126943 | 3300031744 | Soil | MGQESGLSPELTGDLNGVDAGGPPPRLLVAGAMDGAVMRAAERDGEFVAGFAAE |
Ga0306918_107567543 | 3300031744 | Soil | MLLRIIESGLSPELPGDLDGVDAGRLPPRLLVAGAMDRAVMRAAERDGEFVARFAAERP |
Ga0306918_108578561 | 3300031744 | Soil | LRVVEPGLPPELPGDLNGIDAGRLPPGLLVAGAMDGAVMRAAEGHSEFVARFAAERPR |
Ga0318537_100268851 | 3300031763 | Soil | MMLLRIIEPGLSPELAGDLNGIDARRLPPGLLVAGAMDGAVMRAAERDGEFVARFAPERP |
Ga0318509_106484161 | 3300031768 | Soil | VTLLPIIESGLSPELTGDLNGVDAGGLPPGLLVAGAMDRAVMRAAERDGEF |
Ga0318521_100625111 | 3300031770 | Soil | MFLRIIEPGLSPELTSDLNGIDAGRLPPGPFVAGAMDRAVMRAAERDGEFVARFAAERPWLQAAKM |
Ga0318546_104693101 | 3300031771 | Soil | MLLRIIEPGLSPELTGDLNRVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARF |
Ga0318508_12117033 | 3300031780 | Soil | MGQESGLSPELTGDLNGVDAGGLPPGLLVAGAMDRPVMRAAERDGEFIARF |
Ga0318547_102155231 | 3300031781 | Soil | MLLPIIEPGLSPELTGDLNGVNAGRLPPGLLVAGAMDRAVMRTAERDREFVARFAAERPRLQ |
Ga0318547_104708691 | 3300031781 | Soil | MLLPIIEPGLSPEMTGDLNGVDAGGLPPRLLVAGAMDGAVMRAAERDGEFVAGFAAERSWLQVAKMM |
Ga0318547_108377681 | 3300031781 | Soil | MLLRIIEPGLSPELPCDLDGIDAGRLPPGLLVAGTMDGAMVGAAERDDEFVARFA |
Ga0318576_103021551 | 3300031796 | Soil | MLLRIIEPGLSPELTGDLNGVDAGRLPPGLLVPGAMDGAVMRAAERDGEFVARFA |
Ga0318568_107153413 | 3300031819 | Soil | MGQESGLSPELTGDLNGVDAGGPPPRLLVAGAMDGAVMRAAERDGEFVAGFAAERSWLQ |
Ga0318564_100380842 | 3300031831 | Soil | MLLRIIEPGLPPELPGDLNGVDADRLPPGLLVAGAMDRPVMRAAERDGEFVARFAAERPR |
Ga0310917_104897902 | 3300031833 | Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPGLLVAGAMDGAMMRATERDGEFVAR |
Ga0306925_122292132 | 3300031890 | Soil | VTLLPIIEPGLSPELTGDLNGVDAGGLPPGLLIASAMDRSVMRAAERDGEFVARFA |
Ga0318536_106408522 | 3300031893 | Soil | MLLRIIEPGLSPELTGDLNRVDAGRLPPGLLVAGAMDGAVMRAAERDGEFVARFAAER |
Ga0318520_106440452 | 3300031897 | Soil | MLLRIIEPGLSPELPCDLDGIDAGRLPPGLLVAGTMDGAMVGAAERDDEFVARF |
Ga0318520_107754212 | 3300031897 | Soil | MLLRIIQPGLSPQLTGDLDGIDAGRRPPGLLVPGAMDGAMMRAAERDGEFIAGLAAERPRLQ |
Ga0306921_101460791 | 3300031912 | Soil | LRVVEPGLPPELPGDLNGIDAGRLPPRLLVAGAMDGAVVGAAERDDEFVARFAAERPWL |
Ga0306921_115846361 | 3300031912 | Soil | MLLRIIEPGLPPELPGDLDWVDAGRLPPGLLVAGAMDRAVMRAAERDRELVARFAAE |
Ga0310912_110967321 | 3300031941 | Soil | MLLPIVKPGLSLELAGDLNGVDAGRLPPRLLVAGAMDGAMMRAAERDGEFVARFAAERP |
Ga0310913_104452021 | 3300031945 | Soil | MLLRIIEPGLPPELTSDLNGIDAGRPPPRLLVAGAMDRAVMRAAERDGEFVARFAAKRP |
Ga0310913_110264021 | 3300031945 | Soil | MVQPGLLPEVTRDLNGVDAGGLPPGLLIAGAVDRAVMRAAERDGEFVARFAAERPWLQVAKM |
Ga0310910_101678611 | 3300031946 | Soil | MGQESGLSPELTGDLNGVDAGGPPPRLLVAGAMDGAVMRAAERDGEFVAGFAAERSW |
Ga0310910_108686401 | 3300031946 | Soil | VWLLRIIKPGLPPELTGDLNGIDAGRLPPGLLVAGAMNRAVMRAAERDGEFVARFATERSRL |
Ga0310909_110245461 | 3300031947 | Soil | MLLQVIEPGLPPELPGDLNGIDASRPPPGLLVAGAMDRAVMRAAERDGEFVARFAAER |
Ga0306926_119008432 | 3300031954 | Soil | MLLPIIEPGLSPELTGDLNGVDAGRLPPGLLVAGAMDRAVMRAAERHGEFVADFAA |
Ga0306922_112640611 | 3300032001 | Soil | MLLPIVKPGLSLELAGDLNGVDAGRLPPRLLVAGAMDGAMMRAAERDGEFVARFA |
Ga0318549_105679232 | 3300032041 | Soil | MLLRIIEPGLPPELPGDLDWVDAVPGLLVAGAMDRAVMRAAERDRELVARFAAE |
Ga0318545_100234111 | 3300032042 | Soil | MLLRIIEPGLPPELPGDLNGVDADRLPPGLLVAGAMDRPVMRAAERDGEFVARFAAERPWLQVTKM |
Ga0306924_100283706 | 3300032076 | Soil | MFLRIIESGLPPELTGDLHGIDAGRLPPRLLVPGAMDRAVMRAAERDGEFVARFAAERPW |
Ga0318577_101235471 | 3300032091 | Soil | MLLPIIEPGLSPELTGDLNGVNAGRLPPGLLVAGAMDRAVMRTAERDREFVARFA |
Ga0318540_106214901 | 3300032094 | Soil | MLLRIIESGLSPELTGDLNGVDAGRLPPRLLVAGAMDGAMMRATERDGEFVARFAAANNPIRIIFATCN |
Ga0306920_1014242411 | 3300032261 | Soil | MIEPGLSPELAGDLNGVDAGRLPPGLLVAGAMDRAVMRAAERDGEFVARFAAERPWLQVAKMM |
Ga0306920_1021975081 | 3300032261 | Soil | MLLPIIESGLSPELTGDLNGVDAGRLPPRLLVAGAMDRAVMRAAERDGEFVARFAAERPRLQVAKM |
Ga0306920_1029152052 | 3300032261 | Soil | MLLRIIEPGLSPEPAGDLDGVDAGRLPPGLLVASAMDGAVMRTAERDGEFVARF |
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