NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F096804

Metagenome / Metatranscriptome Family F096804

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096804
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 132 residues
Representative Sequence MSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLT
Number of Associated Samples 96
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 55.56 %
% of genes near scaffold ends (potentially truncated) 7.69 %
% of genes from short scaffolds (< 2000 bps) 8.65 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (91.346 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.462 % of family members)
Environment Ontology (ENVO) Unclassified
(33.654 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.115 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234.236.238.240.
1JGI12053J15887_106264441
2JGI25404J52841_101396431
3Ga0066395_105559601
4Ga0066388_1073173451
5Ga0068869_1016207331
6Ga0070666_115070261
7Ga0070661_1004937703
8Ga0070692_113274351
9Ga0070673_1002317921
10Ga0070697_1004199412
11Ga0070672_1013850072
12Ga0066700_105025351
13Ga0068855_1017678031
14Ga0068852_1024491101
15Ga0068864_1021258292
16Ga0066903_1089974931
17Ga0070717_119348481
18Ga0075431_1012062961
19Ga0075425_1020585131
20Ga0066710_1037897901
21Ga0111538_126273981
22Ga0105241_101256541
23Ga0105249_102515511
24Ga0126374_109480911
25Ga0126370_113076741
26Ga0126370_125868871
27Ga0126378_119804951
28Ga0134125_104176761
29Ga0134128_105886571
30Ga0134124_109233211
31Ga0134127_128064801
32Ga0150984_1072534451
33Ga0157341_10450801
34Ga0137413_117323901
35Ga0137416_115088901
36Ga0137404_109462071
37Ga0137404_114199281
38Ga0162652_1000675281
39Ga0164307_100363476
40Ga0164307_106677421
41Ga0164306_102174904
42Ga0157378_105070142
43Ga0157375_111136952
44Ga0163163_117190901
45Ga0157377_101151141
46Ga0157377_116776091
47Ga0157379_108468021
48Ga0157376_103958892
49Ga0132255_1038426762
50Ga0182041_111714381
51Ga0182041_119279411
52Ga0182033_109848002
53Ga0182035_119090751
54Ga0182034_103081392
55Ga0182034_117313221
56Ga0182037_107239271
57Ga0182037_119255331
58Ga0182039_106084751
59Ga0163161_106444552
60Ga0187766_103939972
61Ga0184624_102853501
62Ga0184639_106680861
63Ga0190272_131058251
64Ga0190271_117171301
65Ga0190264_104148831
66Ga0137408_12520851
67Ga0210387_113212691
68Ga0242654_100159911
69Ga0247758_10386132
70Ga0247762_12109601
71Ga0207682_105567121
72Ga0207692_107977201
73Ga0207699_107818601
74Ga0207643_108341941
75Ga0207693_100460321
76Ga0207644_103350074
77Ga0207704_111383011
78Ga0207711_114412601
79Ga0207640_119889381
80Ga0207658_112336421
81Ga0207677_117287311
82Ga0208728_1018741
83Ga0268265_102447823
84Ga0137415_102124502
85Ga0268258_101230321
86Ga0307499_101185411
87Ga0307513_108162371
88Ga0318541_102195682
89Ga0318541_103026632
90Ga0318561_103824931
91Ga0318574_109588381
92Ga0318560_106317071
93Ga0307468_1018156391
94Ga0318497_103091232
95Ga0306919_104888681
96Ga0318551_103692431
97Ga0310911_103690092
98Ga0318559_103602911
99Ga0318556_106184761
100Ga0318558_104834231
101Ga0318553_107027201
102Ga0307470_101574772
103Ga0335076_109687242
104Ga0307510_106342661
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 71.43%    β-sheet: 0.00%    Coil/Unstructured: 28.57%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110120MSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLTExtracel.Cytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
8.7%91.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Plant Litter
Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Ectomycorrhiza
Populus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
Agave
6.7%5.8%3.8%3.8%13.5%9.6%2.9%5.8%2.9%3.8%2.9%4.8%3.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1062644413300001661Forest SoilMTNDVFRVATLTVPCLFGLWTAVACRRAQYHGLPGSEALVWAGLSGVFFLLSLIRTARGLGLLRGFGDFLRGXFRQRGWYEDRRSLQITASIAVTVVIMALIVWGLRWTWHSIKRYRLAIGFAGLTVGFGIIRFISLH
JGI25404J52841_1013964313300003659Tabebuia Heterophylla RhizosphereLRVVALTIACLFGLWTAVACRRAQHHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSLQIAASIAIAIVVIALIVWGLLWVWHYIKRYRLAIGFMGLTLGFAIIR
Ga0066395_1055596013300004633Tropical Forest SoilMTDDALRVAALLVPCLLGLWTAVACRRANYHGVPGSDAPVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRDLFKQRGWYEDRRTLQITASIAVAAVVMVLVVWGLLWAWHYIKRYRLAIAFAGL
Ga0066388_10731734513300005332Tropical Forest SoilMTDDVLRVAALTVPCLFGLWTTVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRRVFKQWGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRL
Ga0068869_10162073313300005334Miscanthus RhizosphereMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFTALTLGFAIIRFIS
Ga0070666_1150702613300005335Switchgrass RhizosphereMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLT
Ga0070661_10049377033300005344Corn RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISLHE
Ga0070692_1132743513300005345Corn, Switchgrass And Miscanthus RhizosphereMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLIKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFTALTLGFAIIR
Ga0070673_10023179213300005364Switchgrass RhizosphereMMDDILRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALFVWGLLWTWHRIRRYRLAVGFAG
Ga0070697_10041994123300005536Corn, Switchgrass And Miscanthus RhizosphereMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWAWHYIKRYRLAIGFAGL
Ga0070672_10138500723300005543Miscanthus RhizosphereMMDDILRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISLHE
Ga0066700_1050253513300005559SoilMTDDVLRVAALLVPCLLGLWTAVACRREHCHGLPGSDAPVWAGLSVVFFLLALMKTARGLGLLRGFGGFLRDTFKQRGWYEDRRTLQITASVAVAVVVMVLVVWGLLWAWHYIKRYRLAIGFAGVTVGFGIIRFISLHEVDAWNA
Ga0068855_10176780313300005563Corn RhizosphereMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFTALTLGFAII
Ga0068852_10244911013300005616Corn RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGII
Ga0068864_10212582923300005618Switchgrass RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASFAVAVVVMALVVWGLVWAWHRIKRYRLAVGFAGLTVGFGIIRFISLHEI
Ga0066903_10899749313300005764Tropical Forest SoilMADDVFRVAALLVACLIGLWTAVACRRAHYRGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLHVFGDFLRAIFKQRGWYEDRRRLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAV
Ga0070717_1193484813300006028Corn, Switchgrass And Miscanthus RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISLHEVDAWNAN
Ga0075431_10120629613300006847Populus RhizosphereMTDDVLRVAALLVPCLLGLWTAVACRRANYNGSPGFDAVVWGGLSVTFFVLFLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRALQITASIAVAVVVMVLVVWGLLWAWHSIK
Ga0075425_10205851313300006854Populus RhizosphereMTDDVLRVAVLLVPFLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLALMKTARGLGLLRGLGGLLRDTFKQRGWYEDRRTLQITASIAVAVVVIVLVAWGLLWVWHYIKRYRLAIGLAALTVGFGI
Ga0066710_10378979013300009012Grasslands SoilMPCVSAALLVPCLLGLWTAVACRRAQHHGVLGSDALVWAGLSAVFFLLSLMKTARSLGLLRGFGDFLRDIFKQRRWYEDRRTLQITASIAVAIVVMVLVVWGLLWAWHYIKRYRLA
Ga0111538_1262739813300009156Populus RhizosphereMTDDVLRVAALLVPCLLGLWTAVACRRANYNGSPGFDAVVWGGLSVTFFVLFLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRALQITASIAVAVVVMVLVVWGLLWAWHSIKRYRLAIGFASL
Ga0105241_1012565413300009174Corn RhizosphereMMDDILRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLTLGFA
Ga0105249_1025155113300009553Switchgrass RhizosphereLFVAPVVDLVAIAVPPKYYCCMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYR
Ga0126374_1094809113300009792Tropical Forest SoilMTEDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWAWHRIKRYRLAVGFAGLTVGF
Ga0126370_1130767413300010358Tropical Forest SoilMSDDVLRVAVLTVPCLFGLWTAVACRRAQYHGLPRSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFRQRGWYEDRRSLQIAASIAVAVVVMALVVWGLRWTWHRIRRYRLAIGFTALTVGFG
Ga0126370_1258688713300010358Tropical Forest SoilMSTDVLRVTALLVPCLLGLWTAVACRRAHYRGLPGSDALVWAGLSAVFFFLSLMKTARGLGLLRGFGGLLRDIFKQRGWYEDRRTLQITASIAVAVVAIVLVIWGLLWAWHYIKR
Ga0126378_1198049513300010361Tropical Forest SoilMTNDVVRVAALTVPCLFGLWAAIVCRRAQYHGLPGSDALVWAGLSGVFFLLSLMKTARGLGLLRGFGDFFRGLFKQRGWYEDRRRSQILASVAIAVVVAALVVWGLLWAWHHIKRYRLAIAFAGLTVGFGILRFVSLHEVDAW
Ga0134125_1041767613300010371Terrestrial SoilMNDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAILVAVIALIVWGLVWAWH
Ga0134128_1058865713300010373Terrestrial SoilMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISLHEIDAWN
Ga0134124_1092332113300010397Terrestrial SoilMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGVGAFLRDIFKQRGWYDDRRSMQIAASIAVAVVIIGLIIWGLVWAWHYIKRYRLAVGFLGLTLGFAFIRF
Ga0134127_1280648013300010399Terrestrial SoilMSDEILRVMALTIASLFGLWTAVACRRAQYHGLPSSDALIWAGLSGAFFLLSLLKTARGLGMLQGFGGLLRDIFKQRGWYEDRRSLQIVASIAIAVLVIAFIVWGLLWAWHYIKRYRLAIGFAGLTIGFAI
Ga0150984_10725344513300012469Avena Fatua RhizosphereMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQITASIAIAVVVIALIVWGLLWA*
Ga0157341_104508013300012494Arabidopsis RhizosphereMSDDILRVAALTVACLFGLWTAVACRRAQYHGLPGSDSLVWAGLSGAFLLLSLMKTARGLGLLRGFGGFVRDIFKQRGWYEDRRSLQIAASIAVAVVVVVLVVWGLLWAWHYIKRYRLA
Ga0137413_1173239013300012924Vadose Zone SoilMTDDVLRVAALLVACLLGLWTAVACRRARYHGLPGSDAPVWAGLSAVFFLLSLMKTARGLGFLRGFGSFLRDIFKQKGWYEDRRTLQITASIAVAVVVVVMVIWGLLWAWHYIKRYRLALGFAGLTVGFGIIRFI
Ga0137416_1150889013300012927Vadose Zone SoilLSLVAIAVPAKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGVFFLLSLLKIARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLW
Ga0137404_1094620713300012929Vadose Zone SoilMTDDVLRVAALLVPGLLRLWTAVVCRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASVGVAVVVMVLVIWVLLWAWHYIKRYRLAVGFA
Ga0137404_1141992813300012929Vadose Zone SoilLTLVAIAVPAKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGTLFLLSLLKTVRGLGLLQGFGAFLRDFFKQRGWYEDRRSLQIAASIAIAVVVIVLIVWGLLWAWHYIKRYRLAIGFMGL
Ga0162652_10006752813300012941SoilLTLVAIAVPAKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGVFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLVWAWHY
Ga0164307_1003634763300012987SoilMMDDVLRVATPTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISL
Ga0164307_1066774213300012987SoilLTLVAIAVPAKYYCCMSDDVLRVVALMIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLALGFMG
Ga0164306_1021749043300012988SoilMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGLAGRGVLAVAGDLPCGDLLGQTFLVGNAA
Ga0157378_1050701423300013297Miscanthus RhizosphereMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDTLIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSFQIAASIGIAAVVIALIVWGLLWAWHYIKRYRL
Ga0157375_1111369523300013308Miscanthus RhizosphereLTLVAIAVPAKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWH*
Ga0163163_1171909013300014325Switchgrass RhizosphereLKQLLPRRKFPVVDIVAIAVPPKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQHHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSLQIAASIAIAVIVIALIVWGLLWAWHYIKRYRLAIGFVGLT
Ga0157377_1011511413300014745Miscanthus RhizosphereMSDEILRVMALTIASLFGLWTAVACRRAQYHGLPSSDALIWAGLSGAFFLLSLLKTVRGLGLLQGFGGFLCDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRHRLAV
Ga0157377_1167760913300014745Miscanthus RhizosphereLTLVAIAVPAKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQHHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLW
Ga0157379_1084680213300014968Switchgrass RhizosphereLFVAPVVDLVAIAVPPKYYCCMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLTLGFAIIR
Ga0157376_1039588923300014969Miscanthus RhizosphereMPIADHLRALFCHAASLRQLTLVAIAVPAKYYWCMNDDVLRVVALTTACLFGLWTAVACRRAQYHGLPGSDALIWAGLSAAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSMQIAASIAIAVVVIALIVWGVLWAWHYIKRYRLAIGFLGLTLGFAIVRFISL
Ga0132255_10384267623300015374Arabidopsis RhizosphereMSDDALRVTALTIASVVGLWTAVACRRAQRHGLPGSDALVWAGLSGVFFLLSVMKTARGLGLLRGFGGFLRDIFKQKGWYEDRRSLQIAASIAVAVVVMALVVWGLLWAWHYIKRYRLAIGFAALT
Ga0182041_1117143813300016294SoilMADDVLRVAALTVPCLLGLWTAVACRRAQYHGLPGSDALVWAGLSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMVLVVWGLLWAWHRIKRYRLAVGFAGLTSSVLERGQNVSSWPRLFSNSGP
Ga0182041_1192794113300016294SoilMTDDVSRVATLMVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLISLMKTARGLGLLHGFGVFLRGIFKQRGWYEDRRSLQIAASIVVAVVVLALVVWGLLWAWHRIKRY
Ga0182033_1098480023300016319SoilMTDDAVLRVAALLVPCLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSSMKTARGLGLLRGFGAFLRGIFKQRGWYEDRRGLQITATIAVAVVVMVLFVWGLLWAWHRIKRYRL
Ga0182035_1190907513300016341SoilMTETLAILFRRKTATVTVDVLRVAVLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLW
Ga0182034_1030813923300016371SoilMADDVLRVAALTVPCLLGLWTAVACRRAQYHGLPGSDALVWAGLPGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLRWTWHRIKRY
Ga0182034_1173132213300016371SoilMRLTPMVGRLAERNILKATAAMTDDAVLRVAALLVACLLGMWTAVACRRAHYHGLPGSDAVVWAGLSVVFFVLSLMKTARGLGLLRGFGDFLRGIFKQRGGYEDRRGLQITATIAVAVVVWSCLSGACSGLGTA
Ga0182037_1072392713300016404SoilMIGFVHPMTESLAILFRRKTATMTDDVLRVGVLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDVLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAV
Ga0182037_1192553313300016404SoilMTDDVLRVAALMVPCLLGLWTAAACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDLLRGIFKQRGWYEDRRSLQITASIAVAVVVMVLVVWGLLWIWHRIKRCRLAVGFAGLTVGFG
Ga0182039_1060847513300016422SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRRLRIAASIAVAVVVMALVVWGLLWTRYRLAVGFAGLTVGFGIIRFISLHEVDAWN
Ga0163161_1064445523300017792Switchgrass RhizosphereMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALVVWGLLWAWRYIKRSPRHRLYG
Ga0187766_1039399723300018058Tropical PeatlandMTGDVLRVAVLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFVRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLRWTWHRIKRYRLAIGFAALTVGFGIIRFISRRS
Ga0184624_1028535013300018073Groundwater SedimentMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVSGLLWAWHYIKRYRLAIGF
Ga0184639_1066808613300018082Groundwater SedimentLTLVAIAVPAKYYCRMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALI
Ga0190272_1310582513300018429SoilMTDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSLQIAASIAIAAVVIALIVWGLLWAWHYIKRYRLAIGFMGLTLGF
Ga0190271_1171713013300018481SoilMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWVGLSGAFFLLSLMKTARDLGMLRGFGAFLRDIFKQGGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWQYIKR
Ga0190264_1041488313300019377SoilVVALTVASLFGLWTAVACRRAQYRGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFRQKGWYEDRRSLQIAASIAIAIVVIALIVWGLLWAWHYIKR
Ga0137408_125208513300019789Vadose Zone SoilMTNDDLRVAALLVPCVLGLWTAIACRRAHYHGLPGSDALVWAGLSAVFFLLSLVKTARGLGLLRGFGDLLRDIFKQRGWYEDRRTLQITVTIAVAVAVMVLLVWGLFWAWHYIKRYRLAIGFAGLTVGFAIIRFISLHE
Ga0210387_1132126913300021405SoilMTNDILRVAVLTVPCLFGLWTAVACRRAQFHGLPGSDALVWAGLSGVFFLLSLVRTARGLGLLHGFGEFLRGIFRQRGWYEDRRSLQIAASIAVTAVIMVLVVWGLRWTWHHIKRYRLAVGFAGLTVGFGIIRFISLHEVD
Ga0242654_1001599113300022726SoilMRLMQMIGPAARNVFKATAAMTDDVLRVAALLVPCLLGLRTAVACRRAHYHGLPGADALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQITASIAVAVVVAVLVVWGLLWAWHRIKRYRLAIGFA
Ga0247758_103861323300023079Plant LitterMSDDVLRVVALTIACLFCLWTAIACRRARYRGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGVGAFLRDIFKQRGWYDDRRSMQIAASIAVAVVIIGLIIWGLAWAWHYIKRYRLAVGFLGL
Ga0247762_121096013300023169Plant LitterMSDDVLRVVALTIACLFCLWTAIACRRARYRGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGVGAFLRDIFKQRGWYDDRRSMQIAASIAVAVVIIGLIIWGLVWAWHYIKRYRL
Ga0207682_1055671213300025893Miscanthus RhizosphereMSDEILRVVALTIACLFGLWTAVACRRAQYHGLPSSDALIWAGLSGAFFLLSLLKTARGLGMLQGFGGLLRDIFKQRGWYEDRRSLQIVASIAIAVLVIAFIVWGLLWAWHYIKRYRLAIGFAGLTIGFAII
Ga0207692_1079772013300025898Corn, Switchgrass And Miscanthus RhizosphereMKSGVLHVATLTIPCLFGLWTAVACRRAQHHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLHGFGDFLRGIFKQRGWYEDRRRLQIAASIAVAVVVMALVVWGLLWIWHRIKRYRLAVGFAGLTVGFGIIRFISL
Ga0207699_1078186013300025906Corn, Switchgrass And Miscanthus RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQFHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWIWHRIKRY
Ga0207643_1083419413300025908Miscanthus RhizosphereMSDEILRVMALTIASLFGLWTAVACRRAQYHGLPSSDALIWAGLSGAFFLLSLLKTARGLGMLQGFGGLLRDIFKQRGWYEDRRSLQIVASIAIAVLVIAFIVWGLLWAWHYIKRYRLAIGFAGL
Ga0207693_1004603213300025915Corn, Switchgrass And Miscanthus RhizosphereMKSGVLHVATLTIPCLFGLWTAVACRRAQHHGLPGSDALVWAGLSGTFFLLSLLKTARGLGLLRQFRDFLRGIFKQRGWYEDRRSLQIAASIIVAVVVMALVVWGLLWTRYRLAVGFAG
Ga0207644_1033500743300025931Switchgrass RhizosphereMMDDVLRVATLTVPCLFGLWTAVACRRAQYHGLAGSDAVVWAGVSGVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALFVWGLLWTWHRIRRYRL
Ga0207704_1113830113300025938Miscanthus RhizosphereLLKQLLPRRKFPVVDIVAIAVPPKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLMKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAILVAVIALIVWGLLWAWHYIKRYRLAV
Ga0207711_1144126013300025941Switchgrass RhizosphereLLKQLLPRRKFPVVDIVAIAVPPKYYCCMSDDVLRVVALTIACLFGLWTAVACRRAQHHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDIFKQRGWYEDRRNLQIAASIAIAVVVIALIVWGLLWAWDYIKRYRLAIGFMGLTLGFAIIRFI
Ga0207640_1198893813300025981Corn RhizosphereMNDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFTALTLGFAIIRFISLHEV
Ga0207658_1123364213300025986Switchgrass RhizosphereTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFLGLTLGFAIVRFISLH
Ga0207677_1172873113300026023Miscanthus RhizosphereLLKQLLPRRKFPVVDLVAMAVPPKYYCCMSDDVLRVVALTIAGLFGLWTAVACRRAQHHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIVASIAIAVLVIAFIVWGLLWAW
Ga0208728_10187413300027102Forest SoilMRLMQMIGPAARNVFKATAAMTDDVLRVAALLVPCLLGLRTAVACRRAHYHGLPGADALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQITASIAVAVVVAVLVVWGLLWAWHRIKRYRLAIGFAG
Ga0268265_1024478233300028380Switchgrass RhizosphereMSDDVLRVAALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSVAFFLLSLMKAARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFTALTLGFAIIRFISLHEV
Ga0137415_1021245023300028536Vadose Zone SoilMTDDALRVAALLVACMLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGLGGFLRDTFKQRGWYEGHRTLHITASIAVAVVVMVLVVWGLMWAWHYIERYRLAIGFAGLTVGFGIIRFISLHESRRRVDRSSP
Ga0268258_1012303213300030502AgaveMSDDVLRVVALTIACLFCLWTAVACRQAQYRGLPGSDALIWAGLSVAIFLLSLMKTVRGLGLLRGFGGFLRDFFKQKGWYEDRRSFQIVASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMG
Ga0307499_1011854113300031184SoilMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGVFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIVIAVVVFALIVWGLVWAWHYIKRYRLAIGFMGL
Ga0307513_1081623713300031456EctomycorrhizaMSDDVLRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGFLRDIFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLVWAWHYIKRYRLAIGFMGLTLGFAIIRFIS
Ga0318541_1021956823300031545SoilMKSGLLRVATLTVPCLFGLWTAVACRQAQYHGLPGSDALVWAGLSGTFFLLSLLKTARGLGLLRQFRDFLRGIFKQRGWYEDRRSLQIAASIIVAVVVMVLVVWGLLWTRYRLAVGFAGLTVGFGIIR
Ga0318541_1030266323300031545SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLRWTWHRIKRYRLAIGLAALTVGFGIIRF
Ga0318561_1038249313300031679SoilMTDDVLRVAALLVPCLLGLRTAVACRRAYYNGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAVVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVGFGVIRFISLHEVDAW
Ga0318574_1095883813300031680SoilMTDDVLRVAALLVPCLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAVVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVG
Ga0318560_1063170713300031682SoilMADNVFRVAALLVPCLLGLWTAVACRRAHYRGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAGVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVGFGVIRFISL
Ga0307468_10181563913300031740Hardwood Forest SoilLRVAALLVPCVLGLWTAVACRRAHHHGLPGSDALVWAGLSAVFFLLALMKTARGLGLLRGLGGLLRDTFKQRGWYEDRRILQITASVAVAVVVIVLVVWGLRWAWHYIKRYRLAIGLAGLTVGFGTIRFISLHEV
Ga0318497_1030912323300031805SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAVGFAGLTVGFGIIRFISLHEVDAWNANAP
Ga0306919_1048886813300031879SoilMTDDVLRVAALLVPCLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAVVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVDFGV
Ga0318551_1036924313300031896SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGVFFLLALMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAVGFAGLTVGFGIIRF
Ga0310911_1036900923300032035SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAVGFAGLTVGFGIIRFISLHEVDAWNAN
Ga0318559_1036029113300032039SoilMTDNVLRVAALTVPCLFGLWTAVACRRAQYHGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVTALVVWGLLWTWHRIERYRLAIGFAGLTAGFGIIRFISLHEVDALN
Ga0318556_1061847613300032043SoilMTDDVLRVATLTVPCLFGLWTAVACRRAQYQGLPGSDALVWAGLSGAFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLLWTWHRIKRYRLAVGFAGLTVGFGIIRFI
Ga0318558_1048342313300032044SoilMTDDVLRVAALLVPCLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAVVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVGFGVIRFIS
Ga0318553_1070272013300032068SoilMTDDVLRVAALLVPCLLGLWTAVACRRAHYHGLPGSDALVWAGLSAVFFLLSLMKTARGLGLLRGFGDFLRGIFKQRGWYEDRRILQITASIAVAVVVLVLIIWGLLWAWHRIKRYRLAVGFAGLTVGFGVIRFISLHEVDAWNASAPW
Ga0307470_1015747723300032174Hardwood Forest SoilMTGDVLRVAALSVACLLGLWTAVACRRADYHGLPGSDALVWAGLSAVFFLLSLVKTVRGLGLLRGFGGLLRDIFKEKGWYEDRRTLQVTASIAVAVVVMVLLVWGLLWAWHYIKRYRLAIGFAALTVGFGIIRFISL
Ga0335076_1096872423300032955SoilMTDDVLRVAALTIPCLLGLWTAAACRRAQDRGLPGYDAVVWAGLSGVFFLLSLIKTARGLGLLHGFGDLLRGIFKQRGWYEDRRSLQIAASIAVAVVVMALVVWGLRWTWHRIKRYRLAIGLAALTVGFGIIRFISLHEVDAWS
Ga0307510_1063426613300033180EctomycorrhizaSIQIGETAFQRSLCLLLKPHLSRRSSPIVAIAGPPKYYCCMSDDALRVVALTIACLFGLWTAVACRRAQYHGLPGSDALIWAGLSGAFFLLSLLKTARGLGLLRGFGGLLRDFFKQRGWYEDRRSLQIAASIAIAVVVIALIVWGLLWAWHYIKRYRLAIGFMGLTLGFAIIRF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.