Metagenome / Metatranscriptome Family F096747

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096747
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	54 residues
Representative Sequence	MTARKVGKILLYGVAGLLGPLLLLMLAVKLALDRAPAYQAEIKEWVHAQTGYHI
Number of Associated Samples	92
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.15 %
% of genes near scaffold ends (potentially truncated)	93.27 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (84.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.538 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.76% β-sheet: 0.00% Coil/Unstructured: 40.24%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF10150	RNase_E_G	82.69
PF02545	Maf	1.92
PF00171	Aldedh	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.92
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.96
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.96
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.46 %
Unclassified	root	N/A	11.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.62 %
Unclassified	root	N/A	11.54 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.58 %
Unclassified	root	N/A	11.54 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	3.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	34.62 %
Unclassified	root	N/A	11.54 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	3.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	10.58 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	3.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	10.58 %
Raphidophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae	3.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	10.58 %
Chattonellales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales	3.85 %
Caenimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonas oryzae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae	10.58 %
Chattonellaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae	3.85 %
unclassified Caenimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonas oryzae pv. oryzae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae	10.58 %
Heterosigma	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma	3.85 %
Caenimonas sp. HX-9-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. HX-9-20	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.54 %
Xanthomonas oryzae pv. oryzae KACC 10331	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	10.58 %
Heterosigma akashiwo	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo	3.85 %
Caenimonas sp. HX-9-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. HX-9-20	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1019930	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300002245\|JGIcombinedJ26739_100178456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2010	Open in IMG/M
3300002245\|JGIcombinedJ26739_100345272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1369	Open in IMG/M
3300004080\|Ga0062385_10446624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	785	Open in IMG/M
3300004091\|Ga0062387_101025352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	634	Open in IMG/M
3300004092\|Ga0062389_102907105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	640	Open in IMG/M
3300004635\|Ga0062388_101452902	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005563\|Ga0068855_101807931	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005602\|Ga0070762_10212184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1189	Open in IMG/M
3300005602\|Ga0070762_10787089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	643	Open in IMG/M
3300005712\|Ga0070764_10264672	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300005712\|Ga0070764_10562408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	692	Open in IMG/M
3300005921\|Ga0070766_11156578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	535	Open in IMG/M
3300005921\|Ga0070766_11206353	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005952\|Ga0080026_10192190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	602	Open in IMG/M
3300005994\|Ga0066789_10060804	Not Available	1644	Open in IMG/M
3300006893\|Ga0073928_11180952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	516	Open in IMG/M
3300009627\|Ga0116109_1012722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	1373	Open in IMG/M
3300009627\|Ga0116109_1027423	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300009638\|Ga0116113_1207628	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300009764\|Ga0116134_1093022	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300010343\|Ga0074044_10208397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	1297	Open in IMG/M
3300010866\|Ga0126344_1065269	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300011120\|Ga0150983_13991358	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300012202\|Ga0137363_10753494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	825	Open in IMG/M
3300012207\|Ga0137381_10599501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	960	Open in IMG/M
3300012362\|Ga0137361_10360319	Not Available	1334	Open in IMG/M
3300012685\|Ga0137397_11065084	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012944\|Ga0137410_11775489	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300014168\|Ga0181534_10431228	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300014493\|Ga0182016_10309415	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300014838\|Ga0182030_11206900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	646	Open in IMG/M
3300015167\|Ga0167661_1016990	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo	1323	Open in IMG/M
3300017938\|Ga0187854_10288557	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300019787\|Ga0182031_1110018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1620	Open in IMG/M
3300019787\|Ga0182031_1420440	Not Available	1671	Open in IMG/M
3300020060\|Ga0193717_1153230	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300020199\|Ga0179592_10355179	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300020579\|Ga0210407_10281237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1298	Open in IMG/M
3300020583\|Ga0210401_10503950	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300020583\|Ga0210401_11067726	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300021168\|Ga0210406_10268949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	1394	Open in IMG/M
3300021181\|Ga0210388_11476315	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300021401\|Ga0210393_10665905	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300021403\|Ga0210397_11445369	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300021475\|Ga0210392_10095218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1947	Open in IMG/M
3300021479\|Ga0210410_10854548	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300022532\|Ga0242655_10293122	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300024123\|Ga0228600_1013259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. HX-9-20	654	Open in IMG/M
3300024181\|Ga0247693_1021121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	868	Open in IMG/M
3300024330\|Ga0137417_1246505	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300025457\|Ga0208850_1025736	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300026291\|Ga0209890_10171361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	710	Open in IMG/M
3300026557\|Ga0179587_10872647	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300027030\|Ga0208240_1025960	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027288\|Ga0208525_1016627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	836	Open in IMG/M
3300027439\|Ga0209332_1082173	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300027480\|Ga0208993_1100514	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300027496\|Ga0208987_1021669	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300027562\|Ga0209735_1048145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	911	Open in IMG/M
3300027562\|Ga0209735_1069792	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300027663\|Ga0208990_1140825	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027663\|Ga0208990_1201529	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300027674\|Ga0209118_1139388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	672	Open in IMG/M
3300027678\|Ga0209011_1214026	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300027783\|Ga0209448_10005190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4081	Open in IMG/M
3300027825\|Ga0209039_10398782	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	526	Open in IMG/M
3300027855\|Ga0209693_10293249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	794	Open in IMG/M
3300027879\|Ga0209169_10224309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas oryzae → Xanthomonas oryzae pv. oryzae → Xanthomonas oryzae pv. oryzae KACC 10331	984	Open in IMG/M
3300027884\|Ga0209275_10359039	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300027908\|Ga0209006_10148727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2056	Open in IMG/M
3300027908\|Ga0209006_10963358	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo	681	Open in IMG/M
3300027911\|Ga0209698_10435424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1021	Open in IMG/M
3300028023\|Ga0265357_1023023	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300028047\|Ga0209526_10513861	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300028536\|Ga0137415_11242907	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300028808\|Ga0302228_10093592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1411	Open in IMG/M
3300029910\|Ga0311369_10756660	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300029954\|Ga0311331_11045419	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo	704	Open in IMG/M
3300029955\|Ga0311342_10962859	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300029992\|Ga0302276_10073272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1916	Open in IMG/M
3300029994\|Ga0302283_1295954	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300030399\|Ga0311353_10150476	Not Available	2220	Open in IMG/M
3300030906\|Ga0302314_10241929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2155	Open in IMG/M
3300031027\|Ga0302308_10336895	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300031057\|Ga0170834_108110576	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300031090\|Ga0265760_10311668	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031231\|Ga0170824_128397385	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300031232\|Ga0302323_100519050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1280	Open in IMG/M
3300031234\|Ga0302325_12938053	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300031236\|Ga0302324_103113646	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031469\|Ga0170819_11786279	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031712\|Ga0265342_10110309	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo	1558	Open in IMG/M
3300031715\|Ga0307476_10258297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1273	Open in IMG/M
3300031753\|Ga0307477_10208225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1359	Open in IMG/M
3300032160\|Ga0311301_11186549	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300032180\|Ga0307471_100565167	Not Available	1293	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.19%
Host-Associated	Host-Associated	4.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.77%
Aquatic	Environmental → Aquatic	14.42%
Plants	Host-Associated → Plants	4.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Peat	Environmental → Terrestrial → Peat	13.46%
Freshwater	Environmental → Aquatic → Freshwater	12.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Sediment	Environmental → Aquatic → Sediment	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.58%
Loam	Environmental → Terrestrial → Soil → Loam	24.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300024123	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5	Host-Associated	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027030	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029992	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10199301	3300000546	Quercus Rhizosphere	MSIRKVGKVLAFSFGGLVLLVLLAMLAVKLALDRAPQYQAEIKEWLHAQT
JGIcombinedJ26739_1001784563	3300002245	Forest Soil	LRVRKAGKILLYCVAGLLGLLLVLILALKVALERAPAYQAEIQQWLHTQTGYHI
JGIcombinedJ26739_1003452721	3300002245	Forest Soil	MSTTVRKIGKILLNGFAGLLGVLLLSMLAVKIALYRAPAYEAEIKQWVHAQTGYNIAF
Ga0062385_104466241	3300004080	Bog Forest Soil	MSLRKTGKILLYCLAGVLSLVLLLMLAVKLALDRAPAYQAEIKEWVRAQTGYHIAFARVS
Ga0062387_1010253522	3300004091	Bog Forest Soil	MSIRKLGKILAFSFGGLLLLVLLAMLAVKLALDRAPRYQAEIKEWLHAQTGFHIAFAH
Ga0062389_1029071051	3300004092	Bog Forest Soil	MSVRKIGKILLYCFAGLLSLALLLMLAVKLALDRAPAYQAEIKQWVHAQTGYHIGFAGVSPSF
Ga0062388_1014529022	3300004635	Bog Forest Soil	MTIRNLGKVLAFSFGGLLLLLLLAMLAVKLALDRAPHYQAEIKEWLHAQTGFHI
Ga0068855_1018079312	3300005563	Corn Rhizosphere	MSWRKAGKILLYGFAGLLGLAAVLLLAVKLALDRAPAYQAEIKQWVHAQ
Ga0070762_102121842	3300005602	Soil	MSARKAGKILLYTVAALLGVLLLLMLGLKLALDRAPAYQSEIKQWVHAQIGYHIAF
Ga0070762_107870892	3300005602	Soil	MIRKLGKILGFSLAGLLILLLLATLALKLVLDRAPQYQAEIKEWVHAQTGYHIGFAR
Ga0070764_102646721	3300005712	Soil	MTKAKAGKILLYCFAGLLGLLLLLMLGIKLALDRAPAYQAEIKEWVHAQTGYHI
Ga0070764_105624082	3300005712	Soil	MLVRKVGKILLYCLAGLLGVLLLLLLAVKITLDRAPAYEAEIKEWVHAQTGYHIGFA
Ga0070766_111565782	3300005921	Soil	MSVRKAGKILLYCVAGLLGLLLLLMLAVKVALDRAPAYQAEIQQWLHAQTGYHITFAGVSPSFRWYG
Ga0070766_112063531	3300005921	Soil	MLVRKIGKILLYCLAGLVGVLLLLLLAVKLTLDRAPAYEAEIKEWVHA
Ga0080026_101921901	3300005952	Permafrost Soil	MIIRKIGKILLYGFAGLLGLVLLLMLAVKLALDRAPAYQAEIKEWVRAQTGYHI
Ga0066789_100608041	3300005994	Soil	MALRKVGKILLYCCAGILGIILLLMLAVKLALDRAPQY
Ga0073928_111809522	3300006893	Iron-Sulfur Acid Spring	VRNAGKILLYCVAGLLGLLLVLILSLKVALERAPAYQAEIQQWLHTQTGYHIKF
Ga0116109_10127222	3300009627	Peatland	MALRKAGKILLYVCAGTLGILLLVLLGAKLALDRAPRYQ
Ga0116109_10274231	3300009627	Peatland	MSLRKAGKILLYCLAGVVGLLLLLMLAIKLALDRAPAYQAEIKQW
Ga0116113_12076281	3300009638	Peatland	MSARKVGKILLTGFAGLLSLLLLALLAAKLMLDRAPAYEGEIKQWVFAQTGYHIDFASVSPS
Ga0116134_10930221	3300009764	Peatland	MALRKLGKILLYCCAGTLGLMVVLLLAVKLALDRVPHYQTEIKDWVHDRIGYHIAFAHVSPAFRWYG
Ga0074044_102083971	3300010343	Bog Forest Soil	VISAAKIGKILLYCFAGLVVLVLLAMLAVKLALARAPQYQAEIKEWVHAQTGYHIGFAHVSPAFRWY
Ga0126344_10652692	3300010866	Boreal Forest Soil	MSARKAGKILLYCFAAVLGVLLLLMLGLKLALDLAPAYQAEIKQWVYAQTG
Ga0150983_139913581	3300011120	Forest Soil	MSAAKIGKILLYCFAGLVVVVLLAMLAVKLALNRAPEYQAEIKE
Ga0137363_107534942	3300012202	Vadose Zone Soil	MHVRRAGKILLYCFAGVLGLLLLLMLALKLALDRAPAYQAEIKQWVHAQPGY
Ga0137381_105995012	3300012207	Vadose Zone Soil	MALRKLGKILLFSCAGILGVFLLLMLAVKLALDRAP
Ga0137361_103603192	3300012362	Vadose Zone Soil	MALRKVGKILLYCCAGILGIFLLLMLAVKLALDRA
Ga0137397_110650842	3300012685	Vadose Zone Soil	MSMRKAGKILLYGFAGLLGLLLVLMLALKLALDRAPAYQAEIQQWLHAQ
Ga0137419_109959892	3300012925	Vadose Zone Soil	MALRKVGKILLYCCAGVLGLILVLMLAVKLALDRAPRYQAEIKDWVHNRIGY
Ga0137410_117754891	3300012944	Vadose Zone Soil	MALRKVVKILLYCGAGILGIVVLLMLAIKLALDRAPQYQAEIKDWVHDRIGYRIAFAHVS
Ga0181534_104312282	3300014168	Bog	MRLRTFGRTLFYCVAGLIVLMLVLALAVKLALDRAPAYQDEIKAWVHRQTGFYI
Ga0181534_107400291	3300014168	Bog	MSLRKLAKILLYCGAGVLVLVVLSLLAVRLALDRVPDYQAQIKEWVHGQIGYHIRFARVSPAFR
Ga0182016_103094152	3300014493	Bog	MVLRKVGQVLLLCLAGLLGSVLLLMLAVKLALDRAPQYQAEIKEWVHGRIGYHIAFA
Ga0182030_112069002	3300014838	Bog	MSVRKIGKILLYCFAGLLGLALLLMLAVKLALDRAPAYQAEIKEWVHA
Ga0167661_10169901	3300015167	Glacier Forefield Soil	MSARKAAKVLLYSCAALLGLVLLLMLGIKLALDRAPLYQAEIKQWVHAQTGYYIAFAGVS
Ga0187854_102885572	3300017938	Peatland	MRLRKLGKILLYCAAGLLGLVLMLLLAVKLALDRVPEYQDE
Ga0182031_11100181	3300019787	Bog	MSVRKLGKILLYSFAGLLGLMLLAMLAVKLALDRAPAYQAEIKAWVHAQTGYHIDLLRA
Ga0182031_14204402	3300019787	Bog	MSVRKLGKILLYSFAGLLGLMLLAMLAVKLALDRAPAYQ
Ga0193728_10543293	3300019890	Soil	MALRKVGKILLFCCAGILGIFLLLMLAVKLALDRAPQYQAEIKDW
Ga0193717_11532302	3300020060	Soil	MALRKVGKILLYCCAGLLSLVLLLLLAVKLALDRAPQYQAEIK
Ga0179592_103551792	3300020199	Vadose Zone Soil	MSVRKVARILLYCFAGLLGLLLLLMLAVKLALDRAPAYQAEIKEWVHAQTGYHIGFANV
Ga0210407_102812371	3300020579	Soil	MSVRKAGKILLYGVAGFLSLLLLLMLALKLALDRAPAYQAEIKEWVHAQTG
Ga0210401_105039502	3300020583	Soil	MSTAKIGKILLYCAAGLVAVLLLAMLAVKLALDRAPQYQAQIKEWVHAQTGYHIGFAH
Ga0210401_110677262	3300020583	Soil	MSARKAVKILLYCFAGLLGVLLLLMLGLKLALDRAPAYQAEIRQWIYAQ
Ga0210406_102689492	3300021168	Soil	MGVRKAGKILLYCFAGLLGLLLLLMLAVKLALDRAPAYQAEIQQWLHAQTGYHI
Ga0210405_111830691	3300021171	Soil	MSTAKIGKILLYCAAGLVAVLLLAMLAVKLALDRAPQYQAQIKE
Ga0210388_114763152	3300021181	Soil	MALRKVGKILLYCCAGMLGIFLVLMLAVKLALDRAPQYQAEIKEWLHGRIGYTIAFAHVSPAFRWYGP
Ga0210393_106659052	3300021401	Soil	MILRRLGRFLAISFGGLLLLVLLAMLGLKLALDRAPRYQAQIKEWLHAQTGYHIAFAHVSPAIRWYGP
Ga0210397_114453691	3300021403	Soil	MSARKAGKILLYTVAALLGVLLLLMLGLKLALDRAPAYQSEIKQWVHAQTGYHIAFAGVS
Ga0210392_100952181	3300021475	Soil	MALRKVGKILLYCCAGVLGIFLLLMLAVKLALDRAPQYQAEIKEWLHGQIGYTIAFAHVSPAFR
Ga0210410_108545482	3300021479	Soil	MSVRKAAKILLYCLAGLLGVLLLLMLAVKLALDRAPAYEAEIKEWVHAQTGYHI
Ga0242655_102931222	3300022532	Soil	MSVRKVGKILLYGFAGLLGLLLLLMLAVKLALDRAPA
Ga0224545_10576302	3300022881	Soil	MRLRKLGKILLYSTAGFLGLVLVLMLAVKLALDRVPEYQDEIK
Ga0228600_10132592	3300024123	Roots	MSLPKAGKVLLYSVAGLLGLVLLLMLAVKLALDRAPAYQAEIKEWVHAQTGYHIGFAG
Ga0247693_10211211	3300024181	Soil	VRKVGKILLYCVAGLLCVLLLLMLAVKLALDRAPAYQAEIKAWVHAQTGYHIAFARVSPS
Ga0137417_12465053	3300024330	Vadose Zone Soil	MALRKVGKILLYCCAGVLGIFLLLMLAVKLALDRAPRYQAEIKEWVHDRIGYTIAFAHVSPAFRWYGP
Ga0208850_10257361	3300025457	Arctic Peat Soil	MSVRKAGKILLYCFAGLLGLVLLLMLALKLALDRAPAYQAEIKEWVHAQTGYHIRFAGVSPSFRWY
Ga0209890_101713611	3300026291	Soil	MVLRKVGKILLYCCAGTLGCILLLMLAVKLALDRAPQYQAQIKDWIHAQIGYRIAFA
Ga0179587_108726471	3300026557	Vadose Zone Soil	MALRKVGKILLFGCAGLLSLILLSLLAVKLALDRA
Ga0208240_10259602	3300027030	Forest Soil	MIIRKLGRLLAIGFGGLLLLVLLAMLGLKIALDRAPRYQAEIKEWLHAQTGYHIAFAHVSPA
Ga0208525_10166271	3300027288	Soil	VRKVGKILLYCVAGLLCVLLLLMLAVKLALDRAPAYQAEIKAWVHAQTGY
Ga0209332_10821732	3300027439	Forest Soil	VRKAGKILLYCVAGLLGLLLVLILALKVALDRAPAYQAEIQQWLHAQTGYHIKFAGVSP
Ga0208993_11005142	3300027480	Forest Soil	MGARKVGKILLYCFAGLLCVLLLSMLSLKLALDRAPAYQAEIKQ
Ga0208987_10216691	3300027496	Forest Soil	LRVRRPGKILLYCFAGVLGALLLLMLAVKIALDRAPAYQAEIK
Ga0209735_10481452	3300027562	Forest Soil	MSARKAGKILLYTVAALLGVLLLLMLGLKLALDRAPAYQSEIKQWVHAQTGYHIA
Ga0209735_10697921	3300027562	Forest Soil	MALRKVGKILLYCCAGILGTFLLLMLAVKLALDRAPRYQAEIKEWVHDRIGYTIAFAHVSPAFRW
Ga0208990_11408251	3300027663	Forest Soil	MTARKVGKILLYGVAGLLGPLLLLMLAVKLALDRAPAYQAEIKEWVHAQTGYHI
Ga0208990_12015291	3300027663	Forest Soil	MALRKVGKILLYCCAGILGIFLLLMLAVKLALDRAPRYQAEI
Ga0209118_11393882	3300027674	Forest Soil	MSVRKAGKILLYCFAGLLGLLLLLILAVKLALDRVPAYQAEIKQWVHAQTGYHIAFAGVSPSFR
Ga0209011_12140261	3300027678	Forest Soil	MSARKAGKILLYSFAAVLGLLLLLMLGLKFALDRVPAYQAEIKQWVHAQT
Ga0209448_100051907	3300027783	Bog Forest Soil	MSAAKIGKILLYCLAGLVVFLLLAMLAVKLVLDRAPQYQAQIKEWVHAQTGYHIGFLHVS
Ga0209039_103987822	3300027825	Bog Forest Soil	MGLRKIGKILLFGIAGLMMGMLLLMLGVKLALDRAPQYQAEIKDWVHNRIGYHIAFAHVSPAF
Ga0209693_102932492	3300027855	Soil	MLARKVGKILLYCLAGLLGVLLLLLLAVKITLDRAPAYE
Ga0209169_102243092	3300027879	Soil	MLVRKVGKILLYCLAGLLGVLLLLLLAVKITLDRAPAYEAEIKEWVHAQTGYHI
Ga0209275_103590391	3300027884	Soil	MSAAKIGKILLYCFAGLVVLVLLTMLAVKLALDRAPQYQAQIKEWVHAQTGYHIGFAHVSPAFRWY
Ga0209006_101487273	3300027908	Forest Soil	MSVRKIGKILLYCFAGLLGVLLLLMLAMKLALDRAPAYQAEIKQWMHAQTGYHIAFAGVSPSFRWYGPEL
Ga0209006_109633582	3300027908	Forest Soil	MSARKAGKILLYSFAAVLGLLLLLMLGLKFALDRVPAYQAEIKQWV
Ga0209698_104354242	3300027911	Watersheds	MSLRKVGKILLYCCAGTLGLILLLMLAVKLALDRAPRYQAQIKDWVHRQTGYHIAFTH
Ga0265357_10230231	3300028023	Rhizosphere	MTFRKLGKVLAFSFGGLLLLVLLALLGVKLALDRAPQYQAEIKEWLHEQTGFHIAF
Ga0209526_105138612	3300028047	Forest Soil	MRMRKAGKILLFCVAGLLGLLLLMISTLKLALDRAPAYEAEIKQW
Ga0137415_112429071	3300028536	Vadose Zone Soil	MSLRKVGKILLYCCAGVLGLILVLMLAVKLALDRAPRYQAEIKDWVHNRIGYHIAFAS
Ga0302228_100935921	3300028808	Palsa	MPTSVRKIGKILLYGFAGLLGVLLLLTLALKIALDRAPAYEAEIKQWVHAQTGYHIAFAGVSPSFRWY
Ga0311369_107566602	3300029910	Palsa	MLKIGKVLLYCLAGFVVTVLMLMLAIKLALDRAPQYQAQIKEWVHAQTGYH
Ga0311328_106438191	3300029939	Bog	MRLRKFGKFLLYGLSGFLALLLVLMLALKLALDRVPA
Ga0311331_110454191	3300029954	Bog	MSVRKVGKVLLYGFAGLVVLLLLAMLAVKLALDRAPAYQAQIKAWVHSQTGYYIGFAHVS
Ga0311342_109628591	3300029955	Bog	MALSKLGKILLYCCAGALCFAILLMLAVTIALDRLPHYQAQIKDWVHEQIGYHIAFARVSPAFRWYG
Ga0302276_100732723	3300029992	Bog	MSLPKAGKILLYGIAALLSLVLLLMLAVKLALDRAPAYQAQIKEWVHAQTGYHIGF
Ga0302283_12959541	3300029994	Fen	MNVRKAAKILLFGVAGVVGFLLLLMLAIKLTLDRAPAYKAEIKQWVFAQTGYHIDFANVSPSFRW
Ga0311353_101504763	3300030399	Palsa	MSMLKIGKVLLYCLAGFVVTVLMLMLAIKLALDRAPQYQAQIKE
Ga0302314_102419291	3300030906	Palsa	MSMLKIGKVLLYCLAGFVVTVLMLMLAIKLALDRAPQYQAQIKEWVHAQTGYHIGF
Ga0302308_103368951	3300031027	Palsa	MTIRKLGKVLAFVFGGFLLLVLLAMLAVKIALDRAPHYQAEIKEWVHAQTGFHI
Ga0170834_1081105762	3300031057	Forest Soil	MSLPKAAKILLYCVAGLLSLVLLLMLAVKLALDRAPAYQAEIKEWVHAQ
Ga0265760_103116682	3300031090	Soil	MTLRKLVKVLAFSFGGLLLLVLLALLGVKLALDRAPQYQAEIKEWLHAQTGFHIAFAHVSPAFR
Ga0170824_1283973852	3300031231	Forest Soil	MRVRKLGKILLYSVAGVLGVLLLLMLAVKIALDRAPAYQAEIKEWVHSQTGYHIAFARV
Ga0302323_1005190502	3300031232	Fen	MVLRKVGKILLYCCAGILGIILVLMLAVKLALDRAPQYQAEIKDWVHERFGYKIA
Ga0302325_129380532	3300031234	Palsa	VRKLGKIFLYCLAGLFGLLLLLMLAVKLALDRAPAYQAEIKDWVHAQTGYHISFARVSPS
Ga0302324_1031136462	3300031236	Palsa	MSARTVGKILLFSFAGLLGLVLLLMFAVKLALDRVPAYESEIKQWAFAQTGYH
Ga0170819_117862792	3300031469	Forest Soil	VRKVGKILLYCVAGLLCVLLLLMLAVKLALDRAPAYQ
Ga0265342_101103092	3300031712	Rhizosphere	MRARKAVKILLYCLAGVLGLLLLLMLSVKLALDRAPAYQAEIKAWAHSQTGYHI
Ga0307476_102582971	3300031715	Hardwood Forest Soil	MSTTVRKIGKILLNGFAGLLGVLLLSMLALKIALYRAPAYEAEIKQWVHAQTGYHIAFAG
Ga0307476_111872531	3300031715	Hardwood Forest Soil	MGFAKIGKILLYCLAGFAGVILLLLLGVKLTLDRAPHYQS
Ga0307477_102082251	3300031753	Hardwood Forest Soil	MSARKAGKILLYTFAALLGVLLLLMLGLKLALDRAPAYQSEIKQWVHAQTGYHIAFAGVSPS
Ga0311301_111865492	3300032160	Peatlands Soil	MTLRKIAKILLFGIAGILLLVLTLMLGVKIALDRAPRYQAEIKEWVHRQSGYHIAFAHVSPAF
Ga0307471_1005651671	3300032180	Hardwood Forest Soil	VRKVGKILLYSFAGLLGVLLLLMLAVKLALDRAPAYQAEIKQWVHAQTGYHIAFARVSPSFRWYGPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096747

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences