NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096503

Metagenome Family F096503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096503
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 55 residues
Representative Sequence MFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLAFVTK
Number of Associated Samples 73
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 90.91 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.115 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater
(35.577 % of family members)
Environment Ontology (ENVO) Unclassified
(85.577 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(82.692 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 71.43%    Coil/Unstructured: 28.57%
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510152025303540455055MFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLAFVTKCytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
2.9%97.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater
Freshwater
Lentic
Freshwater
Freshwater Lake Sediment
Freshwater
Freshwater
Anoxic Zone Freshwater
Freshwater Lake
Freshwater Lake Hypolimnion
Freshwater
10.6%35.6%5.8%25.0%3.8%4.8%3.8%3.8%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
TB18AUG2009E_01088233300000203FreshwaterGNMIKMSIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVAILLAFITKR*
TBL_comb48_EPIDRAFT_104658653300000439FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLALVTK*
TBL_comb48_EPIDRAFT_104720423300000439FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLAFVTK*
JGI24028J26656_101626513300002091LenticMIKMTYRTGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAF
JGI24028J26656_101830823300002091LenticVLGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVXLTAQGGISFWAAVYGLGTAVVVATLLAFITK*
JGI24028J26656_101968323300002091LenticMIKMTYRTGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR*
JGI24218J26658_100689543300002092LenticVLGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK*
JGI24891J29808_100248753300002301LenticMFKLNYRTGRKLVWGSAAIVFMYVXLTAQGGISFWAAVYGLGTAVVVATLLAFITK*
JGI24890J29729_101187323300002307LenticMIKMTYRTGSKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR*
G310J44882_10000827153300002933FreshwaterMIKMSIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVAILLAFITKR*
G310J44882_1000834693300002933FreshwaterMIKMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVAVATLLAFITKR*
G310J44882_1001323643300002933FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVGVATFLAFVTK*
G310J44882_1010009213300002933FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK*
JGI26470J50227_100758663300003375FreshwaterMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK*
JGI26470J50227_101114443300003375FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVVVATFLALVTK*
JGI26470J50227_101850933300003375FreshwaterMIKMSYRTGRKIVWGSAIIVGLYVDFTATGGISFWVAVYALATAVAVATLLAFITKR*
JGI26470J50227_103381923300003375FreshwaterMFKLDYRTGRKLVWGSAAIVALYVDLTATGGISFWAAVYGLGTAVVVATLLALITKR*
Ga0007850_100130333300003783FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK*
Ga0007811_100598343300003787FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK*
Ga0007835_100136643300003789FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWATVYGLGTAVVVATFLALFTK*
Ga0007865_102167123300003796FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVVVA
Ga0007865_102649923300003796FreshwaterGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFITK*
Ga0007846_100926313300003797FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDXTADGGISFWAAVYGLATAVGVATFLALVTK*
Ga0007842_100728313300003798FreshwaterMFKLSYRTGRKLVWGTSAIVFLYVDVTAEGGISFWAAVYGLATAVGVATFLALVTK*
Ga0007863_100290653300003820FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLATAVGVATFLAFVTK*
Ga0031655_1029124413300003852Freshwater Lake SedimentMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFL
Ga0065176_101086013300004691FreshwaterQQNPEEGIMIKMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVAVATLLAFITKR*
Ga0007804_109130623300004770FreshwaterKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK*
Ga0007881_102631023300006072FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFITK*
Ga0007881_111015713300006072FreshwaterMFKLDYRTGRKLVWGTAAIVFIYVDVTADGGISFWAAVYGLATAVGVATFLALVTK*
Ga0007806_107311123300006100FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAQGGISFWATVYGLGTAVVVATFLALVTK*
Ga0007813_106410613300006103FreshwaterMFKLDYRTGRKLVWGTAAIVFIYVDVTADGGISFWATVYGLGTAVVVATFLALVTK*
Ga0007871_111500723300006110FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDLTADGGISFWAAVYGLATAVGVATFLALVTK*
Ga0007824_111550513300006121FreshwaterKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK*
Ga0114962_10001795233300009151Freshwater LakeMIKMSYRQGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR*
Ga0114962_1029176023300009151Freshwater LakeMFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVAATFLALISK*
Ga0114962_1050187723300009151Freshwater LakeMFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVVATFLALISK*
Ga0073936_10004851143300009175Freshwater Lake HypolimnionMFKLNYRTGRKLVWGTAAIVFLYVDVTATGGIFFWATVYGLGTAVVVATLLALISK*
Ga0164296_140836623300013093FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLAFVTK*
Ga0164297_1023639233300013094FreshwaterLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK*
Ga0164297_1035740923300013094FreshwaterVLGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISIWAAVYGLGTAVVVATLLAFITK*
Ga0136642_100991653300013285FreshwaterVLGIIPAPEEAQMFKLSYRTGRKLVWGTAAIVFMYVDLTATGGISFWAAVYGLGTAVVVATFLALITK*
Ga0136641_103650423300013286FreshwaterVVGKIPAPEEAQMFKLNYRTGKKLVWGTAAIVFMYVDLTATGGISFWATVYGLGTAVVVATFLALITK*
Ga0136641_108039123300013286FreshwaterVVWKIPAPEEAQMFKLNYRTGRKLVWGTAAIVFLYVDLTATGGISFWAAVYGLGTAVVVATFLAFITK*
Ga0214256_10920923300020685FreshwaterIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVAILLAFITKR
Ga0214256_10985633300020685FreshwaterMIKMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVAVATLLAFITKR
Ga0214194_10146933300020686FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLAFVTK
Ga0214194_10983623300020686FreshwaterMIKMSIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVAILLAFITKR
Ga0214239_10887923300020688FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVGVATFLAFVTK
Ga0214226_101974713300020693FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLALVTK
Ga0214227_100389333300020703FreshwaterMIKMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVVVATLLAFITKR
Ga0214233_103993723300020709FreshwaterMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVAVATLLAFITKR
Ga0214207_100229953300020716FreshwaterMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK
Ga0214207_100899153300020716FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK
Ga0214178_100035173300020718FreshwaterVLGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK
Ga0214246_103519213300020727FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK
Ga0214243_10196943300021116FreshwaterEAQMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVGVATFLAFVTK
Ga0214179_109599723300021129FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATA
Ga0214180_103320723300021130FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVY
Ga0214206_100544233300021131FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLALVTK
Ga0194047_10001712223300021354Anoxic Zone FreshwaterMFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVVATFLALISK
Ga0194048_10000566183300021519Anoxic Zone FreshwaterMIKMSYRQGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR
Ga0212088_10002392373300022555Freshwater Lake HypolimnionMFKLNYRTGRKLVWGTAAIVFLYVDVTATGGIFFWATVYGLGTAVVVATLLALISK
Ga0212088_1077903713300022555Freshwater Lake HypolimnionGKIPAPEEAQMFKLNYRTGRKLVWGSAAIVFMYVDLTAQGGISFWAAVYGLGTAVVVATLLAFITK
Ga0248169_105245233300022602FreshwaterMFKLNYRTGRKLVWGTAAIVFMYVDLTAQGGISFWATVYGLGTAVVVATLLALITK
Ga0248169_106748223300022602FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK
Ga0209083_113121623300025162FreshwaterMTYRTGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR
Ga0209697_1003706323300025316Freshwater Lake HypolimnionMIKMTYRTGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR
Ga0208383_100842133300025357FreshwaterMFKLDYRTGRKLVWGSAAIVALYVDLTATGGISFWAAVYGLGTAVVVATLLALITKR
Ga0208383_102001613300025357FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLATAVGVATFLALVTK
Ga0208383_102295823300025357FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWATVYGLGTAVAVATFLALVTK
Ga0208257_103696723300025389FreshwaterMIKMSIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVATLLAFITKR
Ga0208874_100683533300025396FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWATVYGLATAVGVATFLALVTK
Ga0208251_100878953300025398FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLAFVTK
Ga0208387_101625623300025400FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFITK
Ga0208876_101829743300025402FreshwaterMFKLDYRTGRKLVWGTAAIVFIYVDVTADGGISFWATVYGLGTAVVVATFLALVTK
Ga0208253_100185563300025418FreshwaterMFKLDFRTGRKLVWGTAAIVFLYVDVTADGGISFWATVYGLATAVGVATFLALVTK
Ga0208617_100763013300025424FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLAT
Ga0208742_100606343300025437FreshwaterMFKLDYRTGRKLVWGTAAIVFIYVDVTADGGISFWAAVYGLATAVGVATFLALVTK
Ga0208379_114571623300025598FreshwaterPEEAQMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLATAVGVATFLALVT
Ga0208507_113394313300025648FreshwaterEEAQMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVVVATFLAFVTK
Ga0208741_1006561023300025723FreshwaterTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK
Ga0208104_101793243300025773FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWATVY
Ga0208104_102625623300025773FreshwaterKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLATAVGVATFLALVTK
Ga0208258_102920823300025783FreshwaterEEAQMFKLSYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLAFVTK
Ga0208498_105842013300025785FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDLTADGGISFWAAVYGLATAVGVATFLAFVTK
Ga0209085_1003007203300027741Freshwater LakeMFKLSYRTGRKLVWGTAAIVFMYVDLTAEGGISFWATVYGLGTAVVAATFLALISK
Ga0209777_1015771223300027896Freshwater Lake SedimentMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK
Ga0209777_1065843513300027896Freshwater Lake SedimentMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLATAVVVATFLAFVTK
Ga0209777_1066317123300027896Freshwater Lake SedimentMSYRTGRKIVWGSAAIVALYVDATATGGISFWVAVYGLGTAVAVATLLAFITKR
Ga0316219_130007423300031759FreshwaterFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLATAVGVATFLALVTK
Ga0316219_130091013300031759FreshwaterMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWATVYGLGTAVVVATFLALVTR
Ga0316217_1020975913300031813FreshwaterTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK
Ga0316217_1033555423300031813FreshwaterEEAQMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVVVATFLALVTK
Ga0316218_104354263300032117FreshwaterLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK
Ga0316218_106152213300032117FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATA
Ga0316218_117660033300032117FreshwaterLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK
Ga0316223_106356913300032560FreshwaterQMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVGVATFLALVTK
Ga0316223_120361413300032560FreshwaterQMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLGTAVVVATFLALVTK
Ga0316223_126682823300032560FreshwaterMFKLSYRTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGL
Ga0316226_115376713300032562FreshwaterMIKMSYRTGRKIVWGSAIIVGLYVDFTATGGISFWVAVYALATAVAVATLLAFITKR
Ga0316232_121665313300032605FreshwaterRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK
Ga0316227_114225813300032677FreshwaterQMFKLDYRTGRKLVWGTAAIVFLYVDVTADGGISFWAAVYGLGTAVVVATFLALVTK
Ga0316224_124910013300032753FreshwaterTGRKLVWGTAAIVFLYVDVTAQGGISFWAAVYGLATAVVVATFLAFVTK


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