Metagenome / Metatranscriptome Family F096335

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Overview

Basic Information
Family ID	F096335
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	52 residues
Representative Sequence	IVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Number of Associated Samples	12
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	19.23 %
% of genes from short scaffolds (< 2000 bps)	23.08 %
Associated GOLD sequencing projects	11
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.038 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat (96.154 % of family members)
Environment Ontology (ENVO)	Unclassified (96.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline) (96.154 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.69% β-sheet: 48.08% Coil/Unstructured: 44.23%
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.04 %
All Organisms	root	All Organisms	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.04 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005825\|Ga0074476_1635026	Not Available	829	Open in IMG/M
3300015360\|Ga0163144_10658309	Not Available	1108	Open in IMG/M
3300015360\|Ga0163144_10893483	Not Available	873	Open in IMG/M
3300015360\|Ga0163144_11136665	Not Available	726	Open in IMG/M
3300015360\|Ga0163144_11168645	Not Available	711	Open in IMG/M
3300015360\|Ga0163144_11271063	Not Available	668	Open in IMG/M
3300020057\|Ga0163151_10532205	Not Available	559	Open in IMG/M
3300020201\|Ga0163154_10228115	Not Available	951	Open in IMG/M
3300020203\|Ga0163148_10317742	Not Available	792	Open in IMG/M
3300020203\|Ga0163148_10378762	Not Available	692	Open in IMG/M
3300020203\|Ga0163148_10379415	Not Available	691	Open in IMG/M
3300020219\|Ga0163146_10379264	Not Available	789	Open in IMG/M
3300020219\|Ga0163146_10389015	Not Available	774	Open in IMG/M
3300020219\|Ga0163146_10412315	Not Available	741	Open in IMG/M
3300020219\|Ga0163146_10498412	Not Available	642	Open in IMG/M
3300020596\|Ga0163149_10132986	Not Available	1676	Open in IMG/M
3300020596\|Ga0163149_10202303	Not Available	1236	Open in IMG/M
3300020596\|Ga0163149_10358359	Not Available	796	Open in IMG/M
3300020596\|Ga0163149_10383991	Not Available	753	Open in IMG/M
3300020596\|Ga0163149_10432591	Not Available	683	Open in IMG/M
3300020596\|Ga0163149_10562361	Not Available	548	Open in IMG/M
3300021298\|Ga0210349_1139266	All Organisms → Viruses → Predicted Viral	1099	Open in IMG/M
3300021852\|Ga0210317_1106656	Not Available	514	Open in IMG/M
3300022222\|Ga0226658_10564251	Not Available	502	Open in IMG/M
3300022385\|Ga0210376_1001407	Not Available	2377	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	96.15%
Marine	Environmental → Aquatic → Marine	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	96.15%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	96.15%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	96.15%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.88%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005825	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB	Environmental	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300020057	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2	Environmental	Open in IMG/M
3300020192	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1	Environmental	Open in IMG/M
3300020201	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP9.P1	Environmental	Open in IMG/M
3300020203	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2	Environmental	Open in IMG/M
3300020219	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP7.G1	Environmental	Open in IMG/M
3300020596	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.G1	Environmental	Open in IMG/M
3300021298	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.460 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021852	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.23 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022222	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 (v2)	Environmental	Open in IMG/M
3300022385	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S771 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0074476_16350261	3300005825	Sediment (Intertidal)	LLLWLLLEFKFNSIVATIVLVAFVVAFDEPMMPFGSLVATLLPFSCSTGVLPSLPQEMQPVHLKT*
Ga0163144_103866431	3300015360	Freshwater Microbial Mat	TVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSSPQEMQLLHFKT*
Ga0163144_106583091	3300015360	Freshwater Microbial Mat	FKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLVIALPSLPQEMQLLHFKT*
Ga0163144_108934831	3300015360	Freshwater Microbial Mat	IAALVVVLFKFKSIVATVIVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLLQEMQLLHFKT*
Ga0163144_109425691	3300015360	Freshwater Microbial Mat	VVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMGLLHFET*
Ga0163144_109929031	3300015360	Freshwater Microbial Mat	ATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIILLPSLPQEMQLLHFKT*
Ga0163144_109967412	3300015360	Freshwater Microbial Mat	SLVATVVVVAFVVAFDEPMKPFGSLVATLLPFSWLTTALPSLPQEMQLLHFKT*
Ga0163144_110522691	3300015360	Freshwater Microbial Mat	TVVVVAFVVAFDEPIMPFGSLVATLLPFSCLIIVSPSLLQEMQLLHFKT*
Ga0163144_110550202	3300015360	Freshwater Microbial Mat	VVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMELLHFKT*
Ga0163144_110698031	3300015360	Freshwater Microbial Mat	VVVVAFVVAFDEPMKPFGSFVATLLPFSCLIIVTVLPSLPQEMELLHFKT*
Ga0163144_111366651	3300015360	Freshwater Microbial Mat	VVVFKFKSIVATVVVVAFVVAFDEPMMPFGSLVAILLPFSCLITVLPSLPQEMQLLHFKT
Ga0163144_111686451	3300015360	Freshwater Microbial Mat	VLFKFKSIVATVIVVAFVVAFDEPMKPFGSLVATRLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_111792121	3300015360	Freshwater Microbial Mat	VVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVSPSLPQEIQLLHFKT*
Ga0163144_112559741	3300015360	Freshwater Microbial Mat	FKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVYPSLPQEMQLLHFKT*
Ga0163144_112606781	3300015360	Freshwater Microbial Mat	VVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_112692401	3300015360	Freshwater Microbial Mat	KSIVATVVVVAFVVAFDEPMMPFGSLVATLVPFSCLIIVLLSLPQDMQLLHLKT*
Ga0163144_112700641	3300015360	Freshwater Microbial Mat	VVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMELLHFKT*
Ga0163144_112710631	3300015360	Freshwater Microbial Mat	VVAFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSWLIIVLPSLPQEMQLLHFKT
Ga0163144_112854371	3300015360	Freshwater Microbial Mat	KSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLHFKT*
Ga0163144_112902981	3300015360	Freshwater Microbial Mat	VVVAFVVAFDEPMKPFGSLVVTLLPFSCLIIALPSLPQEMELLHFKT*
Ga0163144_113084912	3300015360	Freshwater Microbial Mat	VVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_113140132	3300015360	Freshwater Microbial Mat	VAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLYFKT*
Ga0163144_113384511	3300015360	Freshwater Microbial Mat	KFKLIVATVVVVAFVVAFDDPMKPFGSLIATLLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_113833221	3300015360	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMKPFGSLIATLLPFSCLTIVLPSLPQEMELLHFKT*
Ga0163144_113938861	3300015360	Freshwater Microbial Mat	VATVVVVAFVVAFDEPMVPFGSLVATLLPFSCLIIVLPSLPQEMQLLHSKT*
Ga0163144_113969501	3300015360	Freshwater Microbial Mat	AFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLHFKT*
Ga0163144_113981661	3300015360	Freshwater Microbial Mat	VVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_114169721	3300015360	Freshwater Microbial Mat	KFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEM*
Ga0163144_114406801	3300015360	Freshwater Microbial Mat	AFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT*
Ga0163144_114696231	3300015360	Freshwater Microbial Mat	VVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKLDAGFFT*
Ga0163144_115373411	3300015360	Freshwater Microbial Mat	KFKSIVATVVVVAFVVAFDEPMMPFGSLVATLVPFSCLTIVLPSLPQEMQLLHFKT*
Ga0163144_115671271	3300015360	Freshwater Microbial Mat	VVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMLLLHFKT*
Ga0163144_116624941	3300015360	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSSPQEMQLLHFKT*
Ga0163144_116946461	3300015360	Freshwater Microbial Mat	VVAFDEPMMPFGSLVATLLPFSCLIIALPSLPQEMQLLHLKT*
Ga0163144_118127861	3300015360	Freshwater Microbial Mat	KFKSIVATVVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT*
Ga0163151_104587631	3300020057	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMMPFGSLVATLVPFSCLIIVLPSSPQEMQLLHFKT
Ga0163151_105322051	3300020057	Freshwater Microbial Mat	VFKFKSIVATVVVVAFVVAFDEPMVPFGSLVATLLPFSCLIIVLPSLPQEMQLHFKT
Ga0163147_100933234	3300020192	Freshwater Microbial Mat	WLLYYFKFKSLVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLTFVLLSLPQEMQLFHFKT
Ga0163147_103505311	3300020192	Freshwater Microbial Mat	VVVVFKFKSIVATVIVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLDAGFFTSKLDAVDDGGAVDPF
Ga0163147_104056901	3300020192	Freshwater Microbial Mat	FKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLVPFSCLIIVLPSLPQEMQLLHFKT
Ga0163147_104127841	3300020192	Freshwater Microbial Mat	VVVVAFVVAFDEPMKPFGSLVVTLLPFSCLIIALPSLPQEMELLHFKT
Ga0163154_102281152	3300020201	Freshwater Microbial Mat	MASSAAIGIAALVVVLFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163154_102662071	3300020201	Freshwater Microbial Mat	TVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMELLHFKT
Ga0163154_103111561	3300020201	Freshwater Microbial Mat	KFKSIVATVVIVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHLKT
Ga0163154_105331011	3300020201	Freshwater Microbial Mat	VVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHSKT
Ga0163148_101861311	3300020203	Freshwater Microbial Mat	FVVAFDEPMMPFGSLIATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163148_102115223	3300020203	Freshwater Microbial Mat	AFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLFHFKT
Ga0163148_102138741	3300020203	Freshwater Microbial Mat	VIVVAFVVAFDEPMMPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163148_102384331	3300020203	Freshwater Microbial Mat	VVAFVVAFDEPMKPFGSLVAPLLPFSCLIIVLPSLPQEMLLLHFKT
Ga0163148_102735261	3300020203	Freshwater Microbial Mat	ATVVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163148_103100441	3300020203	Freshwater Microbial Mat	AFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMGLLHFET
Ga0163148_103177421	3300020203	Freshwater Microbial Mat	VLFKFKSIVATVIVVAFVVAFDGPIMPFGCLVVTLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163148_103655671	3300020203	Freshwater Microbial Mat	VVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163148_103676122	3300020203	Freshwater Microbial Mat	VAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163148_103787621	3300020203	Freshwater Microbial Mat	ALVVVLFKLKSIVATVVAVAFVVAFDGPMKPFGSFVATLLPFSCLIIVLPSLPQEMELLHFKT
Ga0163148_103794151	3300020203	Freshwater Microbial Mat	ALVVVVFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIVVLPSLPQEMQLLHFKT
Ga0163148_103874571	3300020203	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMKPFGSLIATLLPFSCLIIVLPSLSEEMELLHFKT
Ga0163148_104044121	3300020203	Freshwater Microbial Mat	VAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMELLHFKT
Ga0163148_104451041	3300020203	Freshwater Microbial Mat	FKFKSIVATVVVVAFVIAFDEPMMPFGSLVATLLPLSCLIIVLPSLPQEMQLLHFKT
Ga0163148_104516151	3300020203	Freshwater Microbial Mat	VVVVAFVVAFDEPMMPFGSLVATLLPFSCLTIVLPSLPQEMQLLHFKT
Ga0163148_104543591	3300020203	Freshwater Microbial Mat	VAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKLDAGFFT
Ga0163148_104755071	3300020203	Freshwater Microbial Mat	FKSIVATVVVVAFVVAFDGPMKPFGSLVATLLPFSCLIIALPSLPQEMELLHFKT
Ga0163146_102743671	3300020219	Freshwater Microbial Mat	VVVVAFVVAFDEPMMPFGSLIATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163146_103600301	3300020219	Freshwater Microbial Mat	SIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLVIALPSLPQEMQLLHFKT
Ga0163146_103792641	3300020219	Freshwater Microbial Mat	AFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163146_103890151	3300020219	Freshwater Microbial Mat	VVVFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIALPSLQLLHLKT
Ga0163146_104021611	3300020219	Freshwater Microbial Mat	AFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_104123152	3300020219	Freshwater Microbial Mat	VVVLFKFKSIVATVVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFK
Ga0163146_104299351	3300020219	Freshwater Microbial Mat	TVVVVAFVIAFDEPMMPFGSLVATLLPLSCLIIVLPSLPQEMQLLHFKT
Ga0163146_104322231	3300020219	Freshwater Microbial Mat	VFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_104617862	3300020219	Freshwater Microbial Mat	VFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHLKT
Ga0163146_104672091	3300020219	Freshwater Microbial Mat	FKFKSIVATVVVVAFVVAFDEPMKPFGSFVATLLPFSCLIIALPSLPQEMELLHFKT
Ga0163146_104709551	3300020219	Freshwater Microbial Mat	FKSIVATVVVVAFVVAFDEPMMPFGSLVTTLVPFSCLIIVLPSLPQEMQLLHFKLDAGFF
Ga0163146_104716891	3300020219	Freshwater Microbial Mat	FDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_104735741	3300020219	Freshwater Microbial Mat	FVVDFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMELLHFKT
Ga0163146_104810011	3300020219	Freshwater Microbial Mat	VVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHLKT
Ga0163146_104984121	3300020219	Freshwater Microbial Mat	FKSLITTVIVVAFVVAFDEPMKPFGSFVATLLPFSCLITALPSLPQEMQLLPFKT
Ga0163146_105263011	3300020219	Freshwater Microbial Mat	VVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_105315041	3300020219	Freshwater Microbial Mat	LVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLTFVLLSLPQEMQLFHFKT
Ga0163146_105495071	3300020219	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMMPFGSLIATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_105526451	3300020219	Freshwater Microbial Mat	ATVVVVAFVVAFDEPMMPFGSLIATLIPFSCLIIVLPSLPQEMQLLHFKT
Ga0163146_106571132	3300020219	Freshwater Microbial Mat	KSIVATVVVVAFVVAFDEPMKPFGSLVAPLLPFSCLIIVLPSLPQEMLLLHFKT
Ga0163149_100763675	3300020596	Freshwater Microbial Mat	VATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLTFVLLSLPQEMQLFHFKT
Ga0163149_101271542	3300020596	Freshwater Microbial Mat	VVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSSPQEMQLLHFKT
Ga0163149_101329861	3300020596	Freshwater Microbial Mat	VIAALVVVLFKFKSIVATFVVVAFVVAFDEPMKPFGSLIATLLPFSCLIIVLPSLPQEMELLHFKT
Ga0163149_102023032	3300020596	Freshwater Microbial Mat	VFKFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163149_102298751	3300020596	Freshwater Microbial Mat	AFVVAFDEPMKPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163149_102694211	3300020596	Freshwater Microbial Mat	IVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163149_102820962	3300020596	Freshwater Microbial Mat	AFVVAFDEPMMPFGSLVATLVPFSCLIIVLPSLPQEMQLLHFKT
Ga0163149_103583591	3300020596	Freshwater Microbial Mat	AALVVVLFKFKSIVATVVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIALPSLPQEMLLLHFKT
Ga0163149_103839912	3300020596	Freshwater Microbial Mat	VVLFKFKSIVAPVVVVAFVVAFDEPMKPFGSLVATLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163149_104119761	3300020596	Freshwater Microbial Mat	SIVATVIVVAFVVAFDEPMMPFGSLVVTLLPFSCLIIVLPSLPQEMQLLHFKT
Ga0163149_104325911	3300020596	Freshwater Microbial Mat	VFKFKSIVATVVVVAFVVAFDEPMMPFGSLVTTLVPFSCLIIVLPSLPQEMQLLHFKLDAGFFT
Ga0163149_104468651	3300020596	Freshwater Microbial Mat	SNVATVVVVAFVVAFDEPMMPFGSLVATLVPFSCLIIVLPSSPQEMQLLHFKT
Ga0163149_104476751	3300020596	Freshwater Microbial Mat	VVAFVIAFDEPMMPFGSLVATLLPLSCLIIVLPSLPQEMQLLHFKT
Ga0163149_104500471	3300020596	Freshwater Microbial Mat	VVAFVVAFDEPMMPFGSLVATLVPFSCLIIVLPSLPQEMQLLHLKT
Ga0163149_104680071	3300020596	Freshwater Microbial Mat	VVFKFKSIVATVVVVAFVVAFDEPMVPFGSLVATLLPFSCLTIVLPSLPQEMQLLHFKT
Ga0163149_104847692	3300020596	Freshwater Microbial Mat	AFDEPMKPFGSLVATLLPFSCLIIALPSLPQEMELLHFKT
Ga0163149_105623611	3300020596	Freshwater Microbial Mat	KFKSIVATVVVVAFVVAFDEPMMPFGSLVATLLPFSCLIIALPSLPQEMQLLHFKT
Ga0163149_105637611	3300020596	Freshwater Microbial Mat	VVAFDEPMMPFGSLVATLLPFSCLIIVLPSLPQEMQLLHLKT
Ga0210349_11392661	3300021298	Estuarine	LLLWLLLEFKFNSIVATIVLVAFVVAFDEPMMPFGSLVATLLPFSCSTGVLPSLPQEMQPVHLKT
Ga0210317_11066562	3300021852	Estuarine	LLLWLLLEFKFNSIVATIVVVAFVVAFDEPMKPFGSLVANLLPFSCSIGVLPSLPQEMQPVHFKT
Ga0226658_105642511	3300022222	Freshwater Microbial Mat	ALVVVLFKFKSIVATVIVVAFVVAFDEPMKPFGSFVANLLPFSCLIIVLPSLPQGVELLHFKT
Ga0210376_10014072	3300022385	Estuarine	LLLWLLLEFKFNSIVAKIVVVAFVVAFDEPMMPFGSLVATLLPFSCSTGVLPSLPQEMQPVHLKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096335

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences