NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096283

Metagenome Family F096283

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096283
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 45 residues
Representative Sequence MKKLLTLTSIISTMAVLALMAGCQTVATNQAELAASKKEFLLA
Number of Associated Samples 94
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 35.24 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 94.29 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (94.286 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(22.857 % of family members)
Environment Ontology (ENVO) Unclassified
(36.190 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.429 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1GPINP_02209320
2E41_12509390
3JGI1027J12803_1019014761
4JGI10216J12902_1144946512
5Ga0062591_1028580241
6Ga0066674_101518471
7Ga0066674_103617772
8Ga0066683_103390333
9Ga0066680_101312321
10Ga0066679_107613312
11Ga0066684_103565823
12Ga0066685_111553812
13Ga0066676_105283112
14Ga0065714_101649463
15Ga0066388_1077077501
16Ga0068869_1016550271
17Ga0070710_107277401
18Ga0070708_1000679741
19Ga0066686_100679261
20Ga0066682_100551934
21Ga0066681_108484981
22Ga0070707_1017076091
23Ga0070672_1017492401
24Ga0070686_1014054851
25Ga0066701_101035915
26Ga0066701_109750262
27Ga0068855_1008531291
28Ga0066706_111959882
29Ga0066903_1032638543
30Ga0066903_1079437722
31Ga0066903_1084153313
32Ga0081455_105335233
33Ga0066710_1032622571
34Ga0075423_124846672
35Ga0134088_105974552
36Ga0134109_100237201
37Ga0134111_101051211
38Ga0134066_103300952
39Ga0126381_1026385702
40Ga0126381_1028917351
41Ga0137364_105926392
42Ga0137364_108276013
43Ga0137399_112078692
44Ga0137362_116579702
45Ga0137377_100517011
46Ga0137377_101275051
47Ga0137377_119654392
48Ga0137370_102672101
49Ga0137367_101646103
50Ga0137371_112121052
51Ga0137384_104491723
52Ga0137375_113005492
53Ga0137360_104656914
54Ga0137361_108571951
55Ga0137397_108639642
56Ga0137397_109888073
57Ga0137394_107139841
58Ga0137419_116177972
59Ga0137404_117367371
60Ga0137407_122479251
61Ga0134077_104804611
62Ga0157378_127600101
63Ga0157375_123930763
64Ga0134075_102320991
65Ga0137418_109947281
66Ga0134073_102617821
67Ga0134089_104887951
68Ga0132255_1052288571
69Ga0182032_111464992
70Ga0182039_120711332
71Ga0134074_10979913
72Ga0134074_13579722
73Ga0184621_100562531
74Ga0184619_100955962
75Ga0184617_10466981
76Ga0066669_120018112
77Ga0193693_10628831
78Ga0193731_10863951
79Ga0193755_11033031
80Ga0179594_101703673
81Ga0193709_10688031
82Ga0193695_10139021
83Ga0210384_115791612
84Ga0182009_108257402
85Ga0207688_110554441
86Ga0207711_108166073
87Ga0209688_10933271
88Ga0209470_10839481
89Ga0209159_10836521
90Ga0209159_12394051
91Ga0209157_10336281
92Ga0209376_13835581
93Ga0209805_11482092
94Ga0179587_108344531
95Ga0207601_1056181
96Ga0307296_102385891
97Ga0307312_101639903
98Ga0307289_101450821
99Ga0310915_105271012
100Ga0307468_1003034663
101Ga0306925_109190971
102Ga0306921_118613541
103Ga0310916_103805341
104Ga0306926_113229751
105Ga0310810_113014071
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 57.75%    β-sheet: 0.00%    Coil/Unstructured: 42.25%
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Variant

510152025303540MKKLLTLTSIISTMAVLALMAGCQTVATNQAELAASKKEFLLASequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
94.3%5.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Soil
Soil
Grasslands Soil
Grass Soil
Soil
Soil
Hardwood Forest Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
2.9%8.6%21.9%9.5%22.9%2.9%4.8%3.8%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPINP_022093202065487018SoilVIHENVKQLLRVATLTNVATAMATLLLVAACQTVATNDAELAASKKEFL
E41_125093902170459005Grass SoilMRRLSIPTSIAGIGAVLMLIAACQTVATNNAELAASKKEFLLAQSGFKVI
JGI1027J12803_10190147613300000955SoilMRKLSTLTGIAGIGTFLTLMAACQTVATNDAELAASKKEFLLAQSGFKV
JGI10216J12902_11449465123300000956SoilMKKLLTLTSLVSGVAVLALVAGCQTMATNQSEITTSKKENLLAQAGFKVKTVTTPKQQ
Ga0062591_10285802413300004643SoilMKQLSTLKIIAAVAPLALMVACQTVAINDAELAASKKEFLLAQSGFKVITVTTA
Ga0066674_1015184713300005166SoilVKKLLTLTTIAIAMAVLTLMSACQTVATNDAELVASKKEF
Ga0066674_1036177723300005166SoilMKKLLSLTTIAGIGAVLTLMAACQTATTNQAELAGSKKEFLLAQSGFKVIT
Ga0066683_1033903333300005172SoilLVSNVKKLLTLTSIAIAMAALALISACQTVATNNAELAASK
Ga0066680_1013123213300005174SoilMRHMKEVLTLTNIAGSMAALTLMAACQTVATNNAELAASKKEFLL
Ga0066679_1076133123300005176SoilMKKLLTLTSTVSALAVLALITACQTATTNQAELTASKTEFLLAQSGFKVI
Ga0066684_1035658233300005179SoilMKKLFTLTHLVSGMAVLALIAACQTVATNQAELATSKKEFLLAQAGFKTKTVTT
Ga0066685_1115538123300005180SoilMKKLLTLTSLISGMAVLALIAGCQTVATNQGELAASKKEFLLAQAGFKT
Ga0066676_1052831123300005186SoilMKKLFTLTNLISGMAVLALVAGCQTVATNQGELAASKKEFLLAQA
Ga0065714_1016494633300005288Miscanthus RhizosphereMKQLSTLTNLVAATAALMLMAACQTVATNETELAASRKEFL
Ga0066388_10770775013300005332Tropical Forest SoilMKKRPTLTSRASIGAILALMAACQTVATNDAELAASKKEFLLAQTRTIVG
Ga0068869_10165502713300005334Miscanthus RhizosphereMKQLSTLANLVAATAALMLMAVCQTVATNDAELAASRKEF
Ga0070710_1072774013300005437Corn, Switchgrass And Miscanthus RhizosphereLVGNVKKLLALTTIAIAIAALALISACQTVATNNAELAASKKEFLLAQSGFKVIT
Ga0070708_10006797413300005445Corn, Switchgrass And Miscanthus RhizosphereVKKLSTLTTIAIAMAALTLMAACQTVATNDAELVASKKEFLLAQS
Ga0066686_1006792613300005446SoilMKKLLTLTSFVGSVTVLVLLTACQTVATNQAELTASKKEFMLAQSG
Ga0066682_1005519343300005450SoilVKKLLTLTTIAIAMAVLELMSACQTVATNDAELVASKKEFLLAQSGFKVIT
Ga0066681_1084849813300005451SoilVKKLLTLTTIAIAMAVLTLMSACQTVATNDAELVASKKEFLLAQSGF
Ga0070707_10170760913300005468Corn, Switchgrass And Miscanthus RhizosphereVKKLLTLTTIAIAMAALALISACQTVATNNAELAASKKEFLLA
Ga0070672_10174924013300005543Miscanthus RhizosphereMKQLSTLANLVAATAALILMAACQAVATNNAELAASKKEFLLAQSGFKV
Ga0070686_10140548513300005544Switchgrass RhizosphereMKQLSTLTNLVAATAALMLMAACQTVATNDAELAASRKEFLL
Ga0066701_1010359153300005552SoilMKKPLTLTSIASTIAVVTLIAACQTVATNNAEIAASKK
Ga0066701_1097502623300005552SoilMKKLLTLTSIASTVAVLALIASCQTVATNNAEIAASKKQNLL
Ga0068855_10085312913300005563Corn RhizosphereMKQLSTLANLVAATAALILMAACQAVATNNAELAASKKEFLLA
Ga0066706_1119598823300005598SoilMKQLSTLANLVAATVALMLMSACQTVATNDAELVASKKEFLLAQSGF
Ga0066903_10326385433300005764Tropical Forest SoilMKQLATLTSVVGAAAALMLMAGCQTVATNNAELAASKKEFLLAQSG
Ga0066903_10794377223300005764Tropical Forest SoilMKQLTTLANLVLVTAALMVMAACQTVATNDAELVASKKEFLLA
Ga0066903_10841533133300005764Tropical Forest SoilMKQVLTLTNVVAATAALMLMVACQTVATNDAELVASKKEFLL
Ga0081455_1053352333300005937Tabebuia Heterophylla RhizosphereMKQLSTLTNLVLGIAALMLMAACQTVAVNDAELAASREEFLLAQS
Ga0066710_10326225713300009012Grasslands SoilMKKLFTLTHLVSGMAVLALIAACQTVATNQAELATSKKEFLLAQAGFKTKT
Ga0075423_1248466723300009162Populus RhizosphereMKQVLTLTNIAGSMAALALMAACQTVATNNAELAASKKEFLLAQS
Ga0134088_1059745523300010304Grasslands SoilMKKLVTVTSIVSSMAVLALIAACQTVATNNAEIAASKKQNLLAQSGFKVI
Ga0134109_1002372013300010320Grasslands SoilMKKLLTLTSIASTVAVLALIAACQTVATNNAQIAASKKQNLL
Ga0134111_1010512113300010329Grasslands SoilLVSKLYRGNVKKLLTLTTIAIAMAVLTLMSACQTVATNDAELVASKKEFLLAQS
Ga0134066_1033009523300010364Grasslands SoilMKKLLTLTSIASTVAVLALIAACQTVATNNAQIAASKK
Ga0126381_10263857023300010376Tropical Forest SoilMKTLITLTSIVGIAAVLALMAACQTIATNDAELAASKKEFLLVQSGFKQI
Ga0126381_10289173513300010376Tropical Forest SoilVIRENVKQLLNVAKVTNVVIAMAALVLMEACQTVATNDAELVASKKEFLLAQSGFKVIT
Ga0137364_1059263923300012198Vadose Zone SoilMKKLFTLTHLVSGMAVLALIAACQTVATNQGELAASKKEFLLAQAGFKTKTV
Ga0137364_1082760133300012198Vadose Zone SoilMKQLSTLANLVAATAALMLMSACQTVATNDAELVASKKEFLLAQS
Ga0137399_1120786923300012203Vadose Zone SoilLVGKVKKLLTLTTIAIAMAALALISACQTVATNNAEIVASQKENLLAQS
Ga0137362_1165797023300012205Vadose Zone SoilMKKLVTLTGIVSAMAMLALLAGCQTMATNSSEIAASKKQSLLTQAGFKFITITTP
Ga0137377_1005170113300012211Vadose Zone SoilMKTLLTSIVSTVAVVALITACQTVGTNNAEIVASQKEALLSQSGFK
Ga0137377_1012750513300012211Vadose Zone SoilMKKLLTLTSIASTVAVLALITACQTVATNNAETAASKKQNLLAQAGFKFIAVT
Ga0137377_1196543923300012211Vadose Zone SoilMKQLSTLANLVAATAALMLMAACQTVATNDAELAASRKEFLLAQSGF
Ga0137370_1026721013300012285Vadose Zone SoilMKQLSTLANLVAATAALMLMSACQTVATNDAQLAASRKEFLLAQSGFKV
Ga0137367_1016461033300012353Vadose Zone SoilMKKLSILTTIASALVVMALITACQTIATNQAELTASKKEFLLAQSGFKV
Ga0137371_1121210523300012356Vadose Zone SoilMKKLLTSIISTVAVVALITACQTVATNNAEIIASQKENLLVQSGFKVITVTTHK
Ga0137384_1044917233300012357Vadose Zone SoilMKKLLPLTGIVSAMAILALVAGCQTMATNQAELATSKKENLLAQAGFKV
Ga0137375_1130054923300012360Vadose Zone SoilMKKLYILTSLGSATAVLALITACQTAGTNQAELTASKKEFL
Ga0137360_1046569143300012361Vadose Zone SoilLVSKLYRSNVKKLLTLTTIAIAMAVLALMSACQTVATNDAELVASKKE
Ga0137361_1085719513300012362Vadose Zone SoilMKKLLTLTSIASTVAVLALIAACQTVATNQAEIAASKKQNLLAQAGFKFIAVTTPKQQ
Ga0137397_1086396423300012685Vadose Zone SoilMKKLLTLTSIVSTLAVLALMTACQTVATNNGEIASSQKEKMLAQAGF
Ga0137397_1098880733300012685Vadose Zone SoilVKKLSTLTTIAIAMAALALMSACQTVATNDAELAASK
Ga0137394_1071398413300012922Vadose Zone SoilVKKLSTLTTIAIAMAALALMPACQTVATNDAELVASK
Ga0137419_1161779723300012925Vadose Zone SoilLVSKLYRDNVKKLLTLTTIPIAMAVLALMSACQTVVTNDAELVASKKEFLLAQSGFKVITVT
Ga0137404_1173673713300012929Vadose Zone SoilMKKLLTLTRIAGIGAVLILMAACQTATTNQAELTASKKE
Ga0137407_1224792513300012930Vadose Zone SoilMKTLLTSIVSTVAVVALITACQTVATNNAELAASKKEYLLTQSG
Ga0134077_1048046113300012972Grasslands SoilMKKLFTLTSIASTIAILALIAACQTVATNQGELATSKKEFLLAQAGFKTKTV
Ga0157378_1276001013300013297Miscanthus RhizosphereLVGESYRDNVKKLSTLTTIAVAMAALALISACQTVATNDAEL
Ga0157375_1239307633300013308Miscanthus RhizosphereVKKLLTLTTIATAMAALALISACQTVATNDAELAASKKEFLLAQS
Ga0134075_1023209913300014154Grasslands SoilMKKLFRLTSIVSAMAVLALVAGCQTVATNQAELAASKKEFLL
Ga0137418_1099472813300015241Vadose Zone SoilVKKLLILTTIAIAMAALALISACQTVASNNAELAASKKEFLL
Ga0134073_1026178213300015356Grasslands SoilMKKLFTLTHLVSGMAVLALIAACQTVATNNAELATSKKEMLLAQAG
Ga0134089_1048879513300015358Grasslands SoilMKKLLTLTSIISTMAVLALMAGCQTVATNQAELAASKKEFLLA
Ga0132255_10522885713300015374Arabidopsis RhizosphereVKQLSILTNLLGAVAALTLMAACQTVATNNAELAASRKEFLLAQS
Ga0182032_1114649923300016357SoilMKQLSTLTKVVGATAALALMAACQTVAINDAELAASKKE
Ga0182039_1207113323300016422SoilMKKRSTPARIASIGAILALMAACQTVATNDAELIASKK
Ga0134074_109799133300017657Grasslands SoilMKTLLTSIVSTVAVVALITACQTVATNNAELAASKKEYLLTQS
Ga0134074_135797223300017657Grasslands SoilMKKLLTLPSIISTIAILALIAACQTVATNNAEIAASKKQNLL
Ga0184621_1005625313300018054Groundwater SedimentMKKLLTLANIVSAMAILALVAGCQTMATNSGEIAASKKQNLLTQAGFKF
Ga0184619_1009559623300018061Groundwater SedimentMKKLYIPTSIAGAMAVMALITACQTVATNNAELTASKKEFLLAQS
Ga0184617_104669813300018066Groundwater SedimentMKKLLTLTSIAGIGAVLIVMAACQTVATNSAELTASKKEFLLAQSGFKV
Ga0066669_1200181123300018482Grasslands SoilMKKLFTLTSIASTIAILALIAACQTVATNQGELAASKKEFLLAQAGFKTKTVTT
Ga0193693_106288313300019996SoilMKKLSTLTGIVSAIAALALITACQTVATNNAEIAASKKQN
Ga0193731_108639513300020001SoilMKKLLTLTSTAGIGAVLILMAACQTVATNQAELVASKKEFLLAQSGFKV
Ga0193755_110330313300020004SoilMKKLLTLTGNVSTVAILALIAACQTVATNNAEIVASQKENLL
Ga0179594_1017036733300020170Vadose Zone SoilMKKLFTLTSIASTVAVLALMVACQTVATNNAAIAA
Ga0193709_106880313300021411SoilMKKLLTLTSTAGIGAVLILMAACQTVATNQAELVASKKEFLLAQ
Ga0193695_101390213300021418SoilMKKLSTLTGIVTAMAVLTLIAACQTVATNSSEIAAS
Ga0210384_1157916123300021432SoilMKQLSTLRNVVGATAVLALMAACQTVATNDAELAASKKEFLL
Ga0182009_1082574023300021445SoilMNKPVKLTAIVAAIAAVVLMAACQTVATNDAELVASRKEFLL
Ga0207688_1105544413300025901Corn, Switchgrass And Miscanthus RhizosphereMKQLSTLKIIAAVAPLALMVACQTVAINDAELAASKKEFLLARSGFKVITV
Ga0207711_1081660733300025941Switchgrass RhizosphereLVNKSYKGNVRKLLKLTSIAISMAALALISACQTVATNNAELAA
Ga0209688_109332713300026305SoilMKKLLTLTNIASAAAVLALVVACQTATTNQAELAASKKEFLLAQSGFKV
Ga0209470_108394813300026324SoilVKKLLTLTTIAIAMAVLTLMSACQTVATNDAELVASKKEFL
Ga0209159_108365213300026343SoilMKKLLTLTSIASTVAVLALIAACQTVATNNAEIAASKKQNLLAQAGFK
Ga0209159_123940513300026343SoilMKKLLTLTSFVSGIAILALIAACQTVATNNAEIAASKKQNLLAQAGFRVKQ
Ga0209157_103362813300026537SoilMKKLLTLTSIASTVAVLALIAACQTVATNNAEIAASKKQNLLAQA
Ga0209376_138355813300026540SoilMKKLLTLTSIISTMAVLALMAGCQTVATNQAELAAS
Ga0209805_114820923300026542SoilMKKLLTLTGIVSATAILALVAGCQTAATNQAELATSKKE
Ga0179587_1083445313300026557Vadose Zone SoilMKKLFTLTSIASTVAVLALMVACQTVATNNAAIAASQKENLLTQAGF
Ga0207601_10561813300027461SoilMKQLSILRNVVGATVALALMSACQTVATNDAELVASKKEF
Ga0307296_1023858913300028819SoilLVGNVKKLLALATIAIAMAALALMSACQTVANNNAELAASKKEF
Ga0307312_1016399033300028828SoilMKKLLTLTGNVSTVAILALIAACQTVATNNAEIVA
Ga0307289_1014508213300028875SoilMKKISNLTGIASTMAALALIAACQTVATNNAELVASKK
Ga0310915_1052710123300031573SoilMKKLITLTSIVGIAAVLALMPACQTIATNDAELAASKKE
Ga0307468_10030346633300031740Hardwood Forest SoilMKQLSTLANLVAATATLMLMAACQTVATNNAELAA
Ga0306925_1091909713300031890SoilMKQLSTLTKVVGATAALALMAACQTVAINDAELAPSKKEF
Ga0306921_1186135413300031912SoilMKQLSTLRIIAAVAPLALMVACQTVAINDAELAASKKEFLLAQSGFKVITVTTAK
Ga0310916_1038053413300031942SoilMKQLLTITSVVVAIAALMLMAACQTIATNDAELAASKKEFLLAQ
Ga0306926_1132297513300031954SoilMKQLLTLTSVVVAIAALMLMAACQTIATNDAELAASKKE
Ga0310810_1130140713300033412SoilMKQLSTLANLVAATAALMLMAACQTVATNDAELAASRKEFLLAQ


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