NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096039

Metagenome Family F096039

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096039
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 53 residues
Representative Sequence MNEGDLIAELLQITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI
Number of Associated Samples 56
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 72.12 %
% of genes near scaffold ends (potentially truncated) 14.42 %
% of genes from short scaffolds (< 2000 bps) 74.29 %
Associated GOLD sequencing projects 43
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Predicted Viral (45.192 % of family members)
NCBI Taxonomy ID 10239 (predicted)
Taxonomy All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(41.905 % of family members)
Environment Ontology (ENVO) Unclassified
(60.952 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.333 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84
1SS1002DRAFT_0004379
2JGI25128J35275_10247863
3JGI25128J35275_10459994
4Ga0066856_1000602810
5Ga0066856_100347762
6Ga0066856_100471123
7Ga0066856_101491132
8Ga0066856_102086753
9Ga0066371_101706662
10Ga0066836_100476386
11Ga0100228_11800523
12Ga0100228_13273901
13Ga0100228_13992451
14Ga0098038_10351064
15Ga0098038_11578122
16Ga0098042_10057666
17Ga0098040_10049579
18Ga0098040_10852892
19Ga0098041_10058218
20Ga0098041_10202246
21Ga0098041_10791804
22Ga0111541_100937592
23Ga0111541_101230265
24Ga0114932_1000393413
25Ga0114932_108218212
26Ga0115011_101142594
27Ga0115011_101578115
28Ga0115011_104368462
29Ga0115012_101376314
30Ga0115012_101870501
31Ga0115012_104923193
32Ga0115012_108051212
33Ga0105189_10123893
34Ga0105189_10201452
35Ga0114934_100063042
36Ga0163180_101340822
37Ga0163180_101540406
38Ga0163180_108304814
39Ga0163180_112735022
40Ga0163180_114145362
41Ga0163179_105731412
42Ga0163179_110302331
43Ga0163179_116409683
44Ga0163111_104892785
45Ga0181428_11154431
46Ga0181428_11713062
47Ga0181414_10408292
48Ga0181413_11833461
49Ga0181406_11719791
50Ga0211671_10386962
51Ga0211520_10024812
52Ga0211515_10624172
53Ga0211626_11574903
54Ga0211706_11096112
55Ga0211652_100053453
56Ga0211652_100857661
57Ga0211652_101504512
58Ga0211705_100473283
59Ga0211653_100043625
60Ga0211653_101117184
61Ga0211576_100002866
62Ga0211576_101321053
63Ga0211576_104495741
64Ga0211564_10000009103
65Ga0211564_100088263
66Ga0211564_102707462
67Ga0211564_103688412
68Ga0211564_105736082
69Ga0211473_101420031
70Ga0211548_103759352
71Ga0211514_100113003
72Ga0211514_102305753
73Ga0211694_100423994
74Ga0211640_101309923
75Ga0211543_103379673
76Ga0211579_100090987
77Ga0211579_101199076
78Ga0211579_101692042
79Ga0211579_108021143
80Ga0211579_108533542
81Ga0206682_100630602
82Ga0209992_1000491418
83Ga0208157_100065811
84Ga0208157_11101651
85Ga0208159_10050163
86Ga0208158_10020284
87Ga0208158_10130035
88Ga0209232_10368981
89Ga0208261_10559621
90Ga0208815_10013646
91Ga0208815_10116732
92Ga0208277_10252721
93Ga0208277_11072733
94Ga0208277_11257852
95Ga0208277_12025241
96Ga0208764_101350844
97Ga0208941_10069505
98Ga0209359_100550406
99Ga0209404_100031322
100Ga0209404_100913566
101Ga0209404_101956982
102Ga0209404_107036583
103Ga0183757_10049826
104Ga0315331_106765061
105Ga0315326_105116713
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.72%    β-sheet: 24.05%    Coil/Unstructured: 58.23%
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5101520253035404550MNEGDLIAELLQITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
80.8%19.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Seawater
Marine Oceanic
Marine
Surface Seawater
Marine
Seawater
Marine
Seawater
Deep Subsurface
41.9%7.6%3.8%2.9%2.9%30.5%4.8%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25128J35275_102478633300002488MarineMQDDEGTLISEMLTLTALLGGKMERTEVYESKGRQYKKIVIEYDSQEWVRNEI*
JGI25128J35275_104599943300002488MarineMNEGDLIAELSKITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWVRNEI*
Ga0066856_10006028103300005404MarineMNRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYERNEI*
Ga0066856_1003477623300005404MarineMNEGNLVAELESITDQLGGKLERITGYRSDGRQYKKIVIEYDEKEWKRNE*
Ga0066856_1004711233300005404MarineMDNRSTSEENQMSNGDLIAELLVITAELGGRMERRDVYDSTGRQYKKIVIKYDEKEWERND*
Ga0066856_1014911323300005404MarineMENDSDLIEELRTIAERLGGTMERIDGYKSEGRQYKKIVIEYDSQEWIRNEI*
Ga0066856_1020867533300005404MarineMTNKINEGDLIAELLTITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI*
Ga0066371_1017066623300006024MarineMNEGDLIAELSKITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI*
Ga0066836_1004763863300006166MarineMTFNDGDLIAELLTITAEMGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNDKL*
Ga0100228_118005233300006565MarineMTTEEDKFHKLPEGDLIAELLCISGELGGTMERREVYESQGRKYKKIVIEYDSQEWVRNEI*
Ga0100228_132739013300006565MarineMNEGDLIAELLQITAELGGTMERIDGYKSEGRQYKKIVIEYDSTEWKRNEI*
Ga0100228_139924513300006565MarineMNEGDLIAELSKITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWIRNEI*
Ga0098038_103510643300006735MarineMSNGDLIAELLVITAELGGKMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANLK*
Ga0098038_115781223300006735MarineMNDGDLIAELLAITAELGGTMERREVYESTGRQYKKIVIEYDSTEWERNEI*
Ga0098042_100576663300006749MarineMSNGDLIAELLVITAELGGSMERTEVYESTGRQYKKIVIEYDVKEWERNHKANLK*
Ga0098040_100495793300006751MarineMTFNDGDLIAELLTITAELGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNEI*
Ga0098040_108528923300006751MarineMRNQMNDGDLIAELLTITAELGGKMERREVYESTGRKYKKIVIKYDSQEWVRNEI*
Ga0098041_100582183300006928MarineMSRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYKRDEV*
Ga0098041_102022463300006928MarineMSNGDLIAELLVITAELGGSMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANLK*
Ga0098041_107918043300006928MarineMNEGNLVSELESITDQLGGKLERITGYRSDGRQYKKIVIEYDSKEWKRNEI*
Ga0111541_1009375923300008097MarineMSNGDLIAELLVITAELGGKMERRDVYDSTGRQYKKIVIEYDVKEWKRND*
Ga0111541_1012302653300008097MarineMVNDSDLIEELRTIAEGLGGTMDRIDGYKSEGRQYKKIVIEYDSREWKRNEI*
Ga0114932_10003934133300009481Deep SubsurfaceMANDSDLIQELRTIVERLGGTMERIDGYKSEGRQYKKIVIEYDSREWKRNEI*
Ga0114932_1082182123300009481Deep SubsurfaceMSNGDLIAELLVITAELGGSMERTEVYDSTGRQYKKIVIEYDEKEWERNV*
Ga0115011_1011425943300009593MarineMNEGDLIAELRTIAERLGGTMERIDGYKSEGSQYKKIVIEYDSKEWKRNEV*
Ga0115011_1015781153300009593MarineMRNQMNDGDLIAELLTITAELGGKMERREVYESTGRQYKKIVIEYDSQEWKRNEI*
Ga0115011_1043684623300009593MarineMNRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYKRDEV*
Ga0115012_1013763143300009790MarineMSNGDLIAELLVITAELGGRMERRDVYDSTGRQYKKIVIKYDEKEWERND*
Ga0115012_1018705013300009790MarineMTNKINEGDLIAELLTITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEW
Ga0115012_1049231933300009790MarineGDLISELLTITALLGGTMERQDVYDSTGRQYKKIVIKYDEKGWERNEI*
Ga0115012_1080512123300009790MarineMKMHDDEGTLISEMLTLTDLLGGRMERTEVYESKGRQYKKIVIEYDSKEWKRNEV*
Ga0105189_101238933300009794Marine OceanicMNEGDLIAELLQITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI*
Ga0105189_102014523300009794Marine OceanicMNRQDEGELIAELLCITGELGGKMKRLDCYESTGRRYKKIVIEYDSTEYKRDEV*
Ga0114934_1000630423300011013Deep SubsurfaceMVNDSDLIEELRTIAEGLGGTMERIDGYKSEGRQYKKIVIEYDSREWKRNEI*
Ga0163180_1013408223300012952SeawaterMNEGDLIAELLQITAELGGTMERVDGYKSEGRQYKKIVIEYDSKEWKRNEI*
Ga0163180_1015404063300012952SeawaterMENKMNDGDLIAELLTITAELGGTMERREVYESTGRQYKKIVIEYDSAEWERNEI*
Ga0163180_1083048143300012952SeawaterMSNGDLIAELLVITAELGGSMERTEVYESKGRQYKKIVIEYDVKEWERNV*
Ga0163180_1127350223300012952SeawaterMSNGDLIAELLVITAELGGKMERRDVYDSTGRQYKKIVIEYDVKEWERNHKANLK*
Ga0163180_1141453623300012952SeawaterMNEGDLIAELSKITAKIGGTMERIDGYKSEGRQYKKIVIEYDSQEWVRNEI*
Ga0163179_1057314123300012953SeawaterMNEGDLIAELLEITAELGGTMERIDGYKSEGRQYKKIVIEYDSQEWIRNEI*
Ga0163179_1103023313300012953SeawaterMSNGDLIAELLTITAELGGTMERRDVYDSTGRQYKKIVIEYDSAEWERNEI*
Ga0163179_1164096833300012953SeawaterMSNGDLIAELLVITAELGGKMERTEVYESNGRQYKKIVIEYDVEEWERNHKANLK*
Ga0163111_1048927853300012954Surface SeawaterMSNGDLIAELSKITAELGGTMERRDVYDSTGRQYKKIVIEYDVKEWERNEI*
Ga0181428_111544313300017738SeawaterMVNGSDLIEELRTIAERLGGTIERIDGYKSEGRQYKKIVIEYDSQDWIRNEI
Ga0181428_117130623300017738SeawaterMKNKMNDGDLIAELLTITAELGGTMERREVYESTGRQYKKIVIEYNSTEWERNEI
Ga0181414_104082923300017759SeawaterMNEGDLIAELLEITAELGGTMERIDGYKSEGRQYKKIVIEYDSQEWVRNEI
Ga0181413_118334613300017765SeawaterTEHVATQLRSKMNEGDLIAELLEITAELGGTMERIDGYKSEGRQYKKIVIEYDSQEWIRNEI
Ga0181406_117197913300017767SeawaterKRGLMVNGSDLIEELRTIAERLGGTMERREVYESTGRQYKKIVIEYNSTEWERNEI
Ga0211671_103869623300020270MarineMSNGDLIAELLVITAELGGSMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANVK
Ga0211520_100248123300020294MarineMSNGDLIAELLVITAELGGSMERTEVYDSTGRQYKKIVIEYDEKEWERNV
Ga0211515_106241723300020310MarineMTFNDGDLIAELLTITAELGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNEI
Ga0211626_115749033300020343MarineMDNXSTSEEKQMSNGDLIAELLVITAELGGSMERTEVYESKGRQYKKIVIEYDVKEWERN
Ga0211706_110961123300020345MarineMNRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYERNEI
Ga0211652_1000534533300020379MarineMNEGNLVSELESITDQLGGKLERITGYRSDGRQYKKIVIEYDLKEWKRNA
Ga0211652_1008576613300020379MarineMSRQDEADLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYKRD
Ga0211652_1015045123300020379MarineMTNKINEGDLIAELLTITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWIRNEI
Ga0211705_1004732833300020395MarineMNEGDLIAELLQITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI
Ga0211653_1000436253300020421MarineMNEGNLVAELESITDQLGGKLERITGYRSDGRQYKKIVIEYDLKEWKRNA
Ga0211653_1011171843300020421MarineMNRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYKRDEV
Ga0211576_1000028663300020438MarineMKNKMNDGDLIAELLTITAELGGTMERREVYESTGRQYKKIVIEYDSTEWERNEI
Ga0211576_1013210533300020438MarineMSNGDLIAELLVITAELGGKMERTEVYESKGRQYKKIVIEYDVEEWERNHKANLK
Ga0211576_1044957413300020438MarineMVNGSDLIEELRTIAERLGGTMERREVYESTGRQYKKIVIEYNSTEWERNEI
Ga0211564_100000091033300020445MarineMTFNDGDLIAELLTITAELGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNDKL
Ga0211564_1000882633300020445MarineMSNGDLIAELLTITAKLGGTMERRDVYDSKGRQYKKIVIEYDSKEWKRNEI
Ga0211564_1027074623300020445MarineMNEVNLVSELESITDQLGGNLERITGYRSDGRQYKKIVIEYDLKEWKRNEI
Ga0211564_1036884123300020445MarineMNEGNLVAELESITDQLGGKLERITGYRSDGRQYKKIVIEYDSKEWKRNEI
Ga0211564_1057360823300020445MarineMSNGDLIAELLVITAELGGRMERRDVYDSTGRQYKKIVIEYDVKEWERNEI
Ga0211473_1014200313300020451MarineMVNDSDLIEELRTIAEGLGGTMERIDGYKSEGRQYKKIVIEYDSREWKRNEI
Ga0211548_1037593523300020454MarineMDNXSTSEEKQMSNGDLIAELLVITAELGGSMERTEVYESTGRQYKKIVIEYDEKEWERN
Ga0211514_1001130033300020459MarineMSNGDLIAELLTITAELGGTMERRDVYDSTGRQYKKIVIEYDSKEWKRNEI
Ga0211514_1023057533300020459MarineMQDDEGTLISEMLTLTALLGGKMERTEVYESKGRQYKKIVIEYDSQEWVRNEI
Ga0211694_1004239943300020464MarineMSNGDLIAELLVITAELGGKMERRDVYDSTGRQYKKIVIEYDVKEWKRND
Ga0211640_1013099233300020465MarineMTTEEDKFHKLPEGDLIAELLCISGELGGTMERREVYESQGRKYKKIVIEYDSQEWVRNE
Ga0211543_1033796733300020470MarineMSNGDLIAELLVITAELGGTMERLDGCTSDGRQYKKIVIKYDEKEWERNV
Ga0211579_1000909873300020472MarineMIEYDEGELIAELLCITGELNGKMERIDGYRSDGRQYKKIVIEYDSKEWKRNEI
Ga0211579_1011990763300020472MarineMKNKMNDSDLIEELRTIAERLGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI
Ga0211579_1016920423300020472MarineMVNGSDLIEELRTIAERLGGTIERIDGYKSEGRQYKKIVIEYDSKEWKRNEI
Ga0211579_1080211433300020472MarineMTNKINEGDLIAELLTITAELGGTMERIDGYKSEGSQYKKIVIEYDSKEWKRNEI
Ga0211579_1085335423300020472MarineMSNGDLIAELLTITAELGGTMERRDVYDSKGRQYKKIVIEYDSKEWKRNEI
Ga0206682_1006306023300021185SeawaterMSNGDLIAELLIITAELGGKMERRDVYDSTGRQYKKIVIEYDSKEWKRNEI
Ga0209992_10004914183300024344Deep SubsurfaceMANDSDLIQELRTIVERLGGTMERIDGYKSEGRQYKKIVIEYDSREWKRNEI
Ga0208157_1000658113300025086MarineMSNGDLIAELLVITAELGGKMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANLK
Ga0208157_111016513300025086MarineMSNGDLIAELLVITAELGGSMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANLKXVNN
Ga0208159_100501633300025101MarineMSNGDLIAELLVITAELGGRMERTEVYDSTGRQYKKIVIEYDVKEWERNHKANLK
Ga0208158_100202843300025110MarineMTNKINEGDLIAELLTITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWKRNEI
Ga0208158_101300353300025110MarineMSRQDEGDLIAELLCITGELGGKMRRLDCYESTGRRYKKIVIEYDSTEYKRDEV
Ga0209232_103689813300025132MarineMNEGDLIAELSKITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEW
Ga0208261_105596213300026076MarineMVNDSDLIEELRTIAEGLGGTMDRIDGYKSEGRQYKKIVIEYDSREWKRNEI
Ga0208815_100136463300026134Marine OceanicMHDDEGTLISELLTITALLGGKMERTEVYESKGRQYKKIVIEYDSHEWVRNEI
Ga0208815_101167323300026134Marine OceanicMNEGDLIAELLEITAELGGTMERIDGYKSEGRQYKKIVIEYDSKEWIRNEI
Ga0208277_102527213300026292MarineMNEGNLVAELESITDQLGGKLERITGYRSDGRQYKKIV
Ga0208277_110727333300026292MarineMSNGDLIAELLVITAELGGRMERRDVYDSTGRQYKKIVIKYDEKEWERND
Ga0208277_112578523300026292MarineMENDSDLIEELRTIAERLGGTMERIDGYKSEGRQYKKIVIEYDSQEWIRNEI
Ga0208277_120252413300026292MarineNEGDLIAELLCITGELGGTMERIDGYKSEGRQYKKIVIEYDSQEWVRNEI
Ga0208764_1013508443300026321MarineIKMTFNDGDLIAELLTITAEMGGKMERRDVYESTGRQYKKIVIEYDSKEWKRNDKL
Ga0208941_100695053300027077MarineMSNGDLIAELLVITAELGGKMERTEVYESKGRQYKKIVIEYDVEEWERNH
Ga0209359_1005504063300027830MarineVLYCKKRGSMVNDSDLIEELRTIAEGLGGTMERIDGYKSEGRQYKKIVIEYDSREWKRNE
Ga0209404_1000313223300027906MarineMNEGNLVSELESITDQLGGKLERITGYRSDGRQYKKIVIEYDSKEWKRNEI
Ga0209404_1009135663300027906MarineMRNQMNDGDLIAELLTITAELGGKMERREVYESTGRQYKKIVIEYDSQEWKRNEI
Ga0209404_1019569823300027906MarineMHDDEGTLISEMLTLTDLLGGRMERTEVYESKGRQYKKIVIEYDSKEWKRNEV
Ga0209404_1070365833300027906MarineLSSIEHVATLLRSKMNEGDLIAELRTIAERLGGTMERIDGYKSEGSQYKKIVIEYDSKEWKRNEV
Ga0183757_100498263300029787MarineMNEGDLIAELLQITAELGGTMERVDGYKSEGRQYKKIVIEYDSKEWKRNEI
Ga0315331_1067650613300031774SeawaterNDSDLIEELRTITERLGGTMERIDGYKSEGRQYKKIVIEYDSQEWIRNEI
Ga0315326_1051167133300031775SeawaterMNEGDLIAELRTIAERLGGTMERIDGYKSEGSQYKKIVIEYDSKEWKRNEV


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