Metagenome / Metatranscriptome Family F095942

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095942
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	44 residues
Representative Sequence	LSDDPDPVAVRLDLRPWGHERLRLMEPGAAGLAPRPDLFPSANPLG
Number of Associated Samples	91
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	88.57 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (29.524 % of family members)
Environment Ontology (ENVO)	Unclassified (60.952 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.05% β-sheet: 0.00% Coil/Unstructured: 95.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01597	GCV_H	62.86
PF02347	GDC-P	19.05
PF13483	Lactamase_B_3	10.48
PF12706	Lactamase_B_2	2.86
PF00753	Lactamase_B	1.90
PF12911	OppC_N	0.95
PF03099	BPL_LplA_LipB	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0509	Glycine cleavage system protein H (lipoate-binding)	Amino acid transport and metabolism [E]	62.86
COG0403	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	Amino acid transport and metabolism [E]	19.05
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	19.05
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.95
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.95
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.05 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	58.10 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	58.10 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	53.33 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	53.33 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	40.00 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	13.33 %
Unclassified	root	N/A	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	40.00 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	13.33 %
Unclassified	root	N/A	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002557\|JGI25381J37097_1055841	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	638	Open in IMG/M
3300002558\|JGI25385J37094_10100292	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300005166\|Ga0066674_10451516	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	587	Open in IMG/M
3300005167\|Ga0066672_10021959	All Organisms → cellular organisms → Bacteria	3358	Open in IMG/M
3300005167\|Ga0066672_10355090	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	957	Open in IMG/M
3300005178\|Ga0066688_10227137	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005178\|Ga0066688_10718135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	633	Open in IMG/M
3300005179\|Ga0066684_10305218	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300005187\|Ga0066675_11423311	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	507	Open in IMG/M
3300005406\|Ga0070703_10327314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	647	Open in IMG/M
3300005434\|Ga0070709_10868043	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	712	Open in IMG/M
3300005444\|Ga0070694_100512091	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300005446\|Ga0066686_10398574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	940	Open in IMG/M
3300005446\|Ga0066686_10748517	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	655	Open in IMG/M
3300005451\|Ga0066681_10261060	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005540\|Ga0066697_10148983	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1382	Open in IMG/M
3300005552\|Ga0066701_10896457	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	526	Open in IMG/M
3300005556\|Ga0066707_10150542	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1474	Open in IMG/M
3300005558\|Ga0066698_10772239	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	625	Open in IMG/M
3300005569\|Ga0066705_10833994	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	549	Open in IMG/M
3300006173\|Ga0070716_100632257	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300006755\|Ga0079222_10039030	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300006797\|Ga0066659_11024117	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300006797\|Ga0066659_11371506	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	590	Open in IMG/M
3300006804\|Ga0079221_10787370	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	679	Open in IMG/M
3300006914\|Ga0075436_100053171	All Organisms → cellular organisms → Bacteria	2795	Open in IMG/M
3300007255\|Ga0099791_10163747	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300007258\|Ga0099793_10609161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	547	Open in IMG/M
3300009012\|Ga0066710_103056314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	649	Open in IMG/M
3300009812\|Ga0105067_1114951	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300009814\|Ga0105082_1082549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	585	Open in IMG/M
3300010084\|Ga0127461_1035276	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	534	Open in IMG/M
3300010141\|Ga0127499_1189646	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	663	Open in IMG/M
3300010301\|Ga0134070_10313522	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	601	Open in IMG/M
3300010304\|Ga0134088_10153278	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1097	Open in IMG/M
3300010304\|Ga0134088_10382680	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	685	Open in IMG/M
3300010322\|Ga0134084_10083172	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	998	Open in IMG/M
3300010322\|Ga0134084_10415262	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	528	Open in IMG/M
3300010326\|Ga0134065_10275288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	636	Open in IMG/M
3300010329\|Ga0134111_10377658	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300010329\|Ga0134111_10381679	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	600	Open in IMG/M
3300010333\|Ga0134080_10535237	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	561	Open in IMG/M
3300010337\|Ga0134062_10240212	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010938\|Ga0137716_10238642	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300012198\|Ga0137364_10180086	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300012198\|Ga0137364_10691863	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	769	Open in IMG/M
3300012203\|Ga0137399_11236755	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	629	Open in IMG/M
3300012209\|Ga0137379_10438302	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300012211\|Ga0137377_10448102	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300012350\|Ga0137372_10457786	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	956	Open in IMG/M
3300012353\|Ga0137367_10161457	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1632	Open in IMG/M
3300012356\|Ga0137371_10672774	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	793	Open in IMG/M
3300012357\|Ga0137384_10505414	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300012362\|Ga0137361_10800802	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300012379\|Ga0134058_1191024	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300012386\|Ga0134046_1148248	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300012388\|Ga0134031_1252979	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300012399\|Ga0134061_1224413	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012400\|Ga0134048_1185957	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300012405\|Ga0134041_1418746	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	649	Open in IMG/M
3300012410\|Ga0134060_1486635	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012918\|Ga0137396_10111024	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1968	Open in IMG/M
3300012923\|Ga0137359_10457184	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300012972\|Ga0134077_10100903	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1117	Open in IMG/M
3300014166\|Ga0134079_10756131	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300015264\|Ga0137403_11256514	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	586	Open in IMG/M
3300015356\|Ga0134073_10060628	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300015357\|Ga0134072_10021350	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1617	Open in IMG/M
3300015357\|Ga0134072_10120880	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300015371\|Ga0132258_13711710	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1042	Open in IMG/M
3300017656\|Ga0134112_10119641	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	999	Open in IMG/M
3300018482\|Ga0066669_12051924	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	537	Open in IMG/M
3300021086\|Ga0179596_10491726	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	622	Open in IMG/M
3300024275\|Ga0247674_1021746	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300024330\|Ga0137417_1339541	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	630	Open in IMG/M
3300025164\|Ga0209521_10161701	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300025322\|Ga0209641_10100200	All Organisms → cellular organisms → Bacteria	2215	Open in IMG/M
3300025922\|Ga0207646_10192046	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300026296\|Ga0209235_1001400	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	13020	Open in IMG/M
3300026296\|Ga0209235_1033989	All Organisms → cellular organisms → Bacteria	2603	Open in IMG/M
3300026301\|Ga0209238_1026245	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2186	Open in IMG/M
3300026301\|Ga0209238_1210824	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	571	Open in IMG/M
3300026314\|Ga0209268_1015151	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2957	Open in IMG/M
3300026315\|Ga0209686_1023271	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2444	Open in IMG/M
3300026316\|Ga0209155_1160840	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300026317\|Ga0209154_1057805	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1712	Open in IMG/M
3300026322\|Ga0209687_1294371	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	513	Open in IMG/M
3300026327\|Ga0209266_1017966	All Organisms → cellular organisms → Bacteria	3959	Open in IMG/M
3300026327\|Ga0209266_1190302	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300026327\|Ga0209266_1230849	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	616	Open in IMG/M
3300026331\|Ga0209267_1110290	Not Available	1165	Open in IMG/M
3300026332\|Ga0209803_1027590	All Organisms → cellular organisms → Bacteria	2725	Open in IMG/M
3300026332\|Ga0209803_1176076	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300026342\|Ga0209057_1220090	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	539	Open in IMG/M
3300026343\|Ga0209159_1105478	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300026358\|Ga0257166_1058184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	555	Open in IMG/M
3300026523\|Ga0209808_1104859	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300026530\|Ga0209807_1142793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	929	Open in IMG/M
3300026542\|Ga0209805_1057626	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300027643\|Ga0209076_1182830	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	579	Open in IMG/M
3300027671\|Ga0209588_1110227	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	884	Open in IMG/M
3300027765\|Ga0209073_10528412	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	501	Open in IMG/M
3300027961\|Ga0209853_1079049	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300032174\|Ga0307470_10040315	All Organisms → cellular organisms → Bacteria	2308	Open in IMG/M
3300032180\|Ga0307471_101392715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	862	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.10%
Host-Associated	Host-Associated	1.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.14%
Plants	Host-Associated → Plants	1.90%
Aquatic	Environmental → Aquatic	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.14%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.67%
Loam	Environmental → Terrestrial → Soil → Loam	7.62%
Sand	Environmental → Terrestrial → Soil → Sand	2.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Neutral	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral	0.95%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	29.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	23.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Hot Spring Fe-Si Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010084	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010938	Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012386	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25381J37097_10558412	3300002557	Grasslands Soil	LVLLSDDPDPVAVRLDLRPWGADRLRLIEPGASGGAPRPDLFPSANPLG*
JGI25385J37094_101002921	3300002558	Grasslands Soil	SDDPDPVAVRLDVRPWGHERLRLAEPGARGLAPRPDLFPEANPLA*
Ga0066674_104515161	3300005166	Soil	PGVLALLSDDPDPVTVRLDLRPWGHEPLKLGEPDAAGVTPRPDLFPPHNPLG*
Ga0066672_100219591	3300005167	Soil	VLAYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0066672_103550903	3300005167	Soil	LVLLSDDPDPVAVRLDLRPWGADRLRLVEPGGRGVAPRPDLFPSANPLG*
Ga0066688_102271373	3300005178	Soil	GRPGILVLLSDDPDPVAVRLDLRPWGAERLRLIEPGAHGAAPRPDLFPSANPLG*
Ga0066688_107181352	3300005178	Soil	DPDPVAVRLDVRPWGYDRLHLVEPGAAGLAPRSDLFPSANPLA*
Ga0066684_103052183	3300005179	Soil	VAVRLDLRPWGHDRLKLAEPDAAGLAPRPDLFPPHNPLG*
Ga0066675_114233112	3300005187	Soil	PVAVRLDLRPWGYERLRLMEPGAAGLAPRSDLFPSGNPLG*
Ga0070703_103273142	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	DPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0070709_108680432	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GVLTSLSDDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0070694_1005120913	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	PVAVRLDLRPWGSDRVSLTEHGSHGLAPRADLFPSPNTLA*
Ga0066686_103985743	3300005446	Soil	SDDPDPVAVRLDLRPWGAGRVRLVEPGAAGLAPRSDLFPSANPLP*
Ga0066686_107485171	3300005446	Soil	ALSADPDPVAVRLDLRPWGGDRLRLVEPGAAGLAPRADLFPSANPLP*
Ga0066681_102610603	3300005451	Soil	SADPDPVAVRLDLRPWGGDRLRLVEPGAAGLAPRADLFPSANPLP*
Ga0066697_101489831	3300005540	Soil	AVRLDLRPWGADRLRLVEPGGRGVAPRPDLFPSANPLG*
Ga0066701_108964571	3300005552	Soil	LSDDPDPVAVRLDLRPWGYERLRLVEPGAAGLKPRPDLFPAANPLP*
Ga0066707_101505423	3300005556	Soil	SADPDPVAVRLDLRPWGAGRLLLVEPDATGLAPRSDLFPTANPLP*
Ga0066698_107722391	3300005558	Soil	RPGVLTSLSDDPDPVAVRLDLRPWGAGRVRLVEPGAAGLAPRSDLFPFANPLP*
Ga0066705_108339942	3300005569	Soil	AVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0070716_1006322573	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	RLDLRPWGYDRLRLVEPGAAGLTPRADVFVAANPLP*
Ga0079222_100390304	3300006755	Agricultural Soil	AYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0066659_110241173	3300006797	Soil	RLDLRPWGAGRLLLVEPDAAGLAPRADLFPAANPLP*
Ga0066659_113715061	3300006797	Soil	LSDDPDPVAVRLDLRPWGAGRLLLVEPGAAGLAPRADLFPSANPLP*
Ga0079221_107873702	3300006804	Agricultural Soil	RPGVLAYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0075436_1000531711	3300006914	Populus Rhizosphere	RAGRPGVLAYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANLLG*
Ga0099791_101637471	3300007255	Vadose Zone Soil	HDPDPVAVRLDLRPWGAGRLLLVEPGAAGLAPRSDLFPSANPLP*
Ga0099793_106091611	3300007258	Vadose Zone Soil	SDDPDPVAVRLDLRPWAAGRILLVEPGAAGLAPRPDLFPSANPLA*
Ga0066710_1030563142	3300009012	Grasslands Soil	PVTVRLDLRPWGHEPLELAEPDAAGVTPRPDLFPPHNPLG
Ga0105067_11149511	3300009812	Groundwater Sand	AGRPGVLVLLTDDPDPVAVRLDLRPWGFDRLKLTEPGAVGLRPRPDLFPSANPLA*
Ga0105082_10825492	3300009814	Groundwater Sand	LVLLTDDPDPVAVRLDLRPWGFDRLKLTEPGAVGLRPRPDLFPSANPLA*
Ga0127461_10352762	3300010084	Grasslands Soil	VAVRLDLRPWGHERLRLAEPGAAGVAPRPDLFPEANPLP*
Ga0127499_11896461	3300010141	Grasslands Soil	PVAVRLDLRPWAAGRILLVEPGAAGLPPRPDLFPSANPLP*
Ga0134070_103135221	3300010301	Grasslands Soil	TFLSEDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0134088_101532783	3300010304	Grasslands Soil	DDPDPVAVRLDLRPWGAGRLLLVEPDATGLAPRSDLFPTANPLP*
Ga0134088_103826801	3300010304	Grasslands Soil	RPGVLALLSDDPDPVAVRLDLRPWGHDRLKLAEPDAAGLAPRPDLFPRHNPLG*
Ga0134084_100831721	3300010322	Grasslands Soil	PGVLTYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSPNPLA*
Ga0134084_104152621	3300010322	Grasslands Soil	DPDPVAVRLDLRPWGAGRVRLVEPGAAGLAPRSDLFPFANPLP*
Ga0134065_102752882	3300010326	Grasslands Soil	YLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0134111_103776583	3300010329	Grasslands Soil	VLALLSDDPDPVTVRLDLRPWGHEPLELAEPDAAGVTPRPDLFPPHNPLG*
Ga0134111_103816792	3300010329	Grasslands Soil	SLSDDPDPVAVRLDLRPWDAGRVLLVEPGAAGLAPRSDLFPSSNPLP*
Ga0134080_105352371	3300010333	Grasslands Soil	AVRLDLRPWGGDRLALVEEGAAGLPPRADLFPSGKPLA*
Ga0134062_102402121	3300010337	Grasslands Soil	DDPDPVAVRLDLRPWGHDRLKLAEPDAAGLAPRPDLFPRHNPLG*
Ga0137716_102386423	3300010938	Hot Spring Fe-Si Sediment	AVRLDLRPWDGDRLLLGAPEGSGAAPRADLFPAPNPLP*
Ga0137364_101800861	3300012198	Vadose Zone Soil	DLRPWGGDRLRLVEPGAAGLAPRADLFPSANPLP*
Ga0137364_106918633	3300012198	Vadose Zone Soil	RLDLRPWGYERLRLMEPGAAGLAPRSDLFPSGNPLG*
Ga0137399_112367552	3300012203	Vadose Zone Soil	TSLSDDPDPVAVRLDLRPWAAGRILLVEPGAAGLAPRPDLFPSANPLA*
Ga0137379_104383021	3300012209	Vadose Zone Soil	VAVRLDLRPWGGDRLALVEEGAAGLPPRADLFPAGNPLP*
Ga0137377_104481021	3300012211	Vadose Zone Soil	DLRPWGYEWLRLVEPGAAGLTPRSDLFPAANPLP*
Ga0137372_104577863	3300012350	Vadose Zone Soil	PGVLAYLSDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSGNPLG*
Ga0137367_101614573	3300012353	Vadose Zone Soil	AVRLDLRPWGYERLRLVEPGAAGLAPRPDLFPAPASAPNPLP*
Ga0137371_106727741	3300012356	Vadose Zone Soil	RVGRPGVLAYLSDDPDPVAVRLDLRPWGYERLRLVEPGAAGLKPRPDLFPVANPLP*
Ga0137384_105054143	3300012357	Vadose Zone Soil	TEDPDPVAVRLDLRPWGGERLALTEEGATGSAPRADLFRSGNPLA*
Ga0137361_108008023	3300012362	Vadose Zone Soil	DLRPWGHERLRLAEPGAAGVAPRPDLFPEANPLP*
Ga0134058_11910243	3300012379	Grasslands Soil	RPGVLTSLSDDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0134046_11482483	3300012386	Grasslands Soil	LTFLSEDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0134031_12529791	3300012388	Grasslands Soil	EDPDPIAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0134061_12244133	3300012399	Grasslands Soil	LDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0134048_11859571	3300012400	Grasslands Soil	LDLRPWGADRLRLVEPGASGVAPRPDLFPSANPLG*
Ga0134041_14187463	3300012405	Grasslands Soil	VAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0134060_14866351	3300012410	Grasslands Soil	EDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0137396_101110241	3300012918	Vadose Zone Soil	DPIAVRLDLRPWGAGRLLLVEPGAAGLAPRSDLFPAANPLP*
Ga0137359_104571843	3300012923	Vadose Zone Soil	LAALSADPDPVAIRLDLRPWGAGRLLLVEPEAAGLAPRAELFPAANLLP*
Ga0134077_101009033	3300012972	Grasslands Soil	DPDPVAVRLDLRPWAAGRILLVEPGAAGLPPRPDLFPSANPLP*
Ga0134079_107561311	3300014166	Grasslands Soil	DLRPWGAGRLLLVEPDATGLAPRSDLFPTANPLP*
Ga0137403_112565141	3300015264	Vadose Zone Soil	RPGVLTSLSDDPDPVAVRLDLRPWDAGRVLLVEPGAAGLAPRSDLFPSSNPLP*
Ga0134073_100606283	3300015356	Grasslands Soil	LAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG*
Ga0134072_100213501	3300015357	Grasslands Soil	RLDVRPWGHDRLRLTEPGGHGLAPRPDLFPESNPLA*
Ga0134072_101208803	3300015357	Grasslands Soil	DPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP*
Ga0132258_137117101	3300015371	Arabidopsis Rhizosphere	DPVAVRLDLRPWGYERLSLVEPGAAGLAPRGDLFPSGNPLA*
Ga0134112_101196414	3300017656	Grasslands Soil	LTALSADPDPVAVRLDLRPWGGERLRLVEPGAVGLAPRSDLFPSANPLP
Ga0066669_120519242	3300018482	Grasslands Soil	VHLSDDPDPVAVRLDLRPWGHDRLRLTEPGRHGLAPRPDLFPEANPLA
Ga0179596_104917261	3300021086	Vadose Zone Soil	YLSEDPDPVAVRLDLRLWGGERVALVEEGASGLAPRADLFPSATASA
Ga0247674_10217463	3300024275	Soil	LDLRPWGYDRLRLVEPGAAGLAPRVDLFVAANPLA
Ga0137417_13395412	3300024330	Vadose Zone Soil	LSDDPDPVAVRLDLRPWGASRLLLVEPGAAGLAPRSDLFPAANPLP
Ga0209521_101617011	3300025164	Soil	VLVLLTDDPDPVAVRLDLRPWGFDRLKLTEPGAVGLRPRPDLFPSANPLA
Ga0209641_101002004	3300025322	Soil	DPVAVRLDLRPWGFDRLKLTEPGAVGLRPRPDLFPSANPLA
Ga0207646_101920461	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AGRPGVLALLSDDPDPVAVRLDLRPWGYERLKLAEPGARGLAPRPDLFPPHNPLG
Ga0209235_10014001	3300026296	Grasslands Soil	SDDPDPVAVRLDVRPWGHERLRLAEPGARGLAPRPDLFPEANPLA
Ga0209235_10339893	3300026296	Grasslands Soil	AVRLDSRPWGADRLRLVEPGASGVAPRPDLFPSANPLG
Ga0209238_10262453	3300026301	Grasslands Soil	LSDDPDPVAVRLDLRPWGHERLRLMEPGAAGLAPRPDLFPSANPLG
Ga0209238_12108242	3300026301	Grasslands Soil	RLDLRPWGADRLRLIEPGASGGAPRPDLFPSANPLG
Ga0209268_10151511	3300026314	Soil	PDPVAVRLDLRPWGAGRLLLVEPDATGLAPRSDLFPTANPLP
Ga0209686_10232711	3300026315	Soil	PVAVRLDLRPWGAGRLLLVEPDATGLAPRSDLFPTANPLP
Ga0209155_11608401	3300026316	Soil	LSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRSDLFPSGNPLG
Ga0209154_10578053	3300026317	Soil	SDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSPNPLG
Ga0209687_12943712	3300026322	Soil	VAVRLDLRPWGYERLRLMEPGAAGLAPRSDLFPSGNPLG
Ga0209266_10179661	3300026327	Soil	SDDPDPVAVRLDVRPWGHDRLRLTEPGGHGLAPRPDLFPEANPLA
Ga0209266_11903021	3300026327	Soil	AVRLDLRPWGAGRVLLVEPGAAGLAPRSDLFPSANPLP
Ga0209266_12308491	3300026327	Soil	GDDPDPVTVRLDLRPWGHEPLELAEPDAAGVTPRPDLFPPHNPLG
Ga0209267_11102902	3300026331	Soil	LVLLSDDPDPVAVRLDLRPWGAERLRLIEPGAHGAAPRPDLFPSANPLG
Ga0209803_10275901	3300026332	Soil	LSDDPDPVAVRLDLRPWGHDRLKLAEPDAAGLAPRPDLFPRHNPLG
Ga0209803_11760761	3300026332	Soil	VRLDLRPWGADRLRLVEPGASGVAPRPDLFPSANPLG
Ga0209057_12200901	3300026342	Soil	VAVRLDLRPWGADRLRLVEPGGRGVAPRPDLFPSANPLG
Ga0209159_11054783	3300026343	Soil	DDPDPVAVRLDLRPWGGDRLALVEEGAAGLPPRADLFPSGKPLA
Ga0257166_10581842	3300026358	Soil	HAGRAGVLTSLSDDPDPVAVRLDLRPWGAGRVLLVEPGAAGLAPRADLFPSANPLP
Ga0209808_11048591	3300026523	Soil	LAYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG
Ga0209807_11427931	3300026530	Soil	GVLAYLSDDPDPVAVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSANPLG
Ga0209805_10576261	3300026542	Soil	DDPDPVAVRLDLRPWGAERLRLIEPGAHGAAPRPDLFPSANPLG
Ga0209076_11828302	3300027643	Vadose Zone Soil	PVAVRLDLRPWGAERLRLIEPGAHGAAPRPDLFPAANPLG
Ga0209588_11102271	3300027671	Vadose Zone Soil	GVLVWLSDDPDPVAVRLDLRPWGHERLRLVEAGGAGLAPRPDLFPSSNPLA
Ga0209073_105284121	3300027765	Agricultural Soil	TLSDDPDPVAVRLDLRPWGYERLSLVEPGAAGLAPRGDLFPSGNPLA
Ga0209853_10790493	3300027961	Groundwater Sand	DPDPVAVRLDLRPWGFDRLKLTEPGAVGLRPRPDLFPSANPLA
Ga0307470_100403154	3300032174	Hardwood Forest Soil	RLDLRPWGYDRLRLVEPGAAGLAPRVDLFVAANPLA
Ga0307471_1013927151	3300032180	Hardwood Forest Soil	AVRLDLRPWGYERLRLMEPGAAGLAPRPDLFPSGNPLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095942

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences