Metagenome / Metatranscriptome Family F095716

Basic Information
Family ID	F095716
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	62 residues
Representative Sequence	IDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Number of Associated Samples	89
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.191 % of family members)
Environment Ontology (ENVO)	Unclassified (34.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.238 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1GPWSG_01260920 2MBSR1b_0582.00007190 3F14TC_1014182092 4JGI11643J12802_100165623 5JGI11643J12802_103292002 6soilL1_100698482 7Ga0063454_1004827091 8Ga0062590_1006696721 9Ga0063356_1006274603 10Ga0066388_1009515912 11Ga0066388_1020882002 12Ga0066388_1051651811 13Ga0070680_1006509451 14Ga0070689_1000132131 15Ga0070701_101237552 16Ga0070679_1002101724 17Ga0070679_1009834561 18Ga0070704_1012899432 19Ga0070664_10000099111 20Ga0068861_1003094131 21Ga0068862_10000207419 22Ga0068862_1005803251 23Ga0075432_105597331 24Ga0075422_101509442 25Ga0075428_1021623411 26Ga0075421_1007026543 27Ga0075430_1010250852 28Ga0075431_1014113542 29Ga0075431_1018546892 30Ga0075433_108019691 31Ga0075434_1009056562 32Ga0079218_100180915 33Ga0079218_111807591 34Ga0075435_1009339082 35Ga0105240_113955422 36Ga0111539_100296175 37Ga0075418_100359555 38Ga0075423_105369633 39Ga0075423_123710442 40Ga0105242_101156811 41Ga0134123_102655203 42Ga0134123_105533581 43Ga0150984_1063077822 44Ga0157304_10340742 45Ga0157293_101298261 46Ga0157288_101513551 47Ga0157291_100549382 48Ga0157286_103229082 49Ga0157308_100989392 50Ga0164303_115151551 51Ga0163162_102295621 52Ga0132258_138160962 53Ga0132256_1005135002 54Ga0132257_1002241712 55Ga0132255_1007403741 56Ga0190265_103514552 57Ga0190274_105751602 58Ga0173481_102195162 59Ga0173481_107176101 60Ga0190264_101555272 61Ga0247792_10719101 62Ga0207696_10814211 63Ga0207642_101832932 64Ga0207688_103053112 65Ga0207680_100735032 66Ga0207649_100307772 67Ga0207652_107074821 68Ga0207681_102038663 69Ga0207689_100137055 70Ga0207712_100187314 71Ga0207668_100047379 72Ga0207640_102896243 73Ga0207658_100137351 74Ga0207677_103271261 75Ga0207674_108031132 76Ga0207698_114741371 77Ga0207428_100496994 78Ga0207428_100547194 79Ga0209382_104082723 80Ga0268265_107384112 81Ga0268265_108523792 82Ga0268264_123737602 83Ga0247828_109780012 84Ga0310888_105896911 85Ga0310887_101668983 86Ga0310886_106603462 87Ga0310886_107152132 88Ga0310813_113825412 89Ga0307406_102576651 90Ga0310891_100985362 91Ga0310885_100754623 92Ga0310884_102464391 93Ga0307416_1003688403 94Ga0307416_1030710922 95Ga0310897_103399971 96Ga0307411_103261733 97Ga0310906_112209661 98Ga0310899_101814572 99Ga0310890_101116213 100Ga0310889_100906203 101Ga0310810_103144201 102Ga0310810_103971323 103Ga0310810_113240961 104Ga0314793_157845_45_257 105Ga0373959_0222071_8_157
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1GPWSG_01260920 2JGI11643J12802_100165623 3Ga0075422_101509442 4Ga0075421_1007026543 5Ga0163162_102295621 6Ga0190265_103514552 7Ga0207677_103271261
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1GPWSG_01260920 2JGI11643J12802_100165623 3Ga0075422_101509442 4Ga0075421_1007026543 5Ga0163162_102295621 6Ga0190265_103514552 7Ga0207677_103271261
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.24% β-sheet: 16.18% Coil/Unstructured: 45.59%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00300	His_Phos_1	52.38
PF00072	Response_reg	12.38
PF00484	Pro_CA	5.71
PF07452	CHRD	2.86
PF03116	NQR2_RnfD_RnfE	0.95
PF04205	FMN_bind	0.95
PF09694	Gcw_chp	0.95
PF05683	Fumerase_C	0.95
PF12840	HTH_20	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	5.71
COG1805	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB	Energy production and conversion [C]	0.95
COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	Energy production and conversion [C]	0.95
COG4658	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfD subunit	Energy production and conversion [C]	0.95

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	49.52%
Host-Associated	Host-Associated	50.48%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.48%
Terrestrial	Environmental → Terrestrial	49.52%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.38%
Soil	Environmental → Terrestrial → Soil	49.52%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.81%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.81%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.81%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.86%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 89 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_01260920	2067725003	Soil	MVIDARTIVGAAGAFAVARLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
MBSR1b_0582.00007190	2162886012	Miscanthus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
F14TC_1014182092	3300000559	Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEGKDLGAADTKDSA
JGI11643J12802_100165623	3300000890	Soil	VAGLALWLLSPPAEQPGKHGSVEVVQMQERSWTVEVKDLGAADTKEPARTA
JGI11643J12802_103292002	3300000890	Soil	VAGLALWLLAPPAEQPGKHGSVEVVQMQEPAWTVEVKDLGAADTKEPARTA
soilL1_100698482	3300003267	Sugarcane Root And Bulk Soil	MVIEARTIVGAVGAFAVAGLALWLLSPPAEQPTRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0063454_1004827091	3300004081	Soil	GVMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0062590_1006696721	3300004157	Soil	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0063356_1006274603	3300004463	Arabidopsis Thaliana Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR*
Ga0066388_1009515912	3300005332	Tropical Forest Soil	MVIEARTVVGAAGAFAVAGLALWLLSPPAEQPNRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0066388_1020882002	3300005332	Tropical Forest Soil	MVIEARTIVGAVGAFAVAGLALWLLSPPAEQPSRHGSVEITQVQEKSWTVEVKDLGAADTKDTARTASNR*
Ga0066388_1051651811	3300005332	Tropical Forest Soil	VIEARTIVGAAGAFAVAGLALWLLSPPAEEPGKHGTVEVVQMQEKSWQVEVKDLGAADTKEPARTAANR*
Ga0070680_1006509451	3300005336	Corn Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0070689_1000132131	3300005340	Switchgrass Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0070701_101237552	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0070679_1002101724	3300005530	Corn Rhizosphere	DARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0070679_1009834561	3300005530	Corn Rhizosphere	DARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0070704_1012899432	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0070664_10000099111	3300005564	Corn Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0068861_1003094131	3300005719	Switchgrass Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0068862_10000207419	3300005844	Switchgrass Rhizosphere	VAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0068862_1005803251	3300005844	Switchgrass Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEKPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR*
Ga0075432_105597331	3300006058	Populus Rhizosphere	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTAR
Ga0075422_101509442	3300006196	Populus Rhizosphere	LWLLSPPAEQPGKRGSVEVTQVQERSWTVEVKDLGAADTADTARTAANR*
Ga0075428_1021623411	3300006844	Populus Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR*
Ga0075421_1007026543	3300006845	Populus Rhizosphere	MVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAADADAPARTAANR*
Ga0075430_1010250852	3300006846	Populus Rhizosphere	PPAEQPGKHGSVEVVQMQERSWTVEVKDLGAADTKEPARTAANR*
Ga0075431_1014113542	3300006847	Populus Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGSVEVVQMQEPAWTVEVKDLGAADTKEPARTAANR*
Ga0075431_1018546892	3300006847	Populus Rhizosphere	MVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAAD
Ga0075433_108019691	3300006852	Populus Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTA
Ga0075434_1009056562	3300006871	Populus Rhizosphere	ARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR*
Ga0079218_100180915	3300007004	Agricultural Soil	MVIEARTIVGAAAAFAVAGAALWVFSPPADQQTRRGSVEVTQVEERPWTVEVKDLGATDATDAARTAANR*
Ga0079218_111807591	3300007004	Agricultural Soil	MVIEARTVIGAAGAFAVAGLALWLLSPSADQQAKRGSVEVTQVLERTWTVDVKDLGATDTTDTARTAANR*
Ga0075435_1009339082	3300007076	Populus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAGDTKDTARTAANR*
Ga0105240_113955422	3300009093	Corn Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0111539_100296175	3300009094	Populus Rhizosphere	LALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0075418_100359555	3300009100	Populus Rhizosphere	LALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDAARTAANR*
Ga0075423_105369633	3300009162	Populus Rhizosphere	PPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0075423_123710442	3300009162	Populus Rhizosphere	MVIQARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR*
Ga0105242_101156811	3300009176	Miscanthus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0134123_102655203	3300010403	Terrestrial Soil	VAGLALWLLSPPAEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0134123_105533581	3300010403	Terrestrial Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR*
Ga0150984_1063077822	3300012469	Avena Fatua Rhizosphere	LALWLLSPPPEQPGRHGSVEVMQVQEKSWTVEVKDLGAADTKDSARTAANR*
Ga0157304_10340742	3300012882	Soil	VAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0157293_101298261	3300012898	Soil	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTART
Ga0157288_101513551	3300012901	Soil	VAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0157291_100549382	3300012902	Soil	LALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0157286_103229082	3300012908	Soil	AIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0157308_100989392	3300012910	Soil	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDT
Ga0164303_115151551	3300012957	Soil	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAAD
Ga0163162_102295621	3300013306	Switchgrass Rhizosphere	AGLALWLRSPPPEQPGRHGTVEVTQVQEKCWTVEVKDLGATDAKDTARTAANR*
Ga0132258_138160962	3300015371	Arabidopsis Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPNRHGSVEVTQVQEKSWTVEVKDLGAADTKDSARTAANR*
Ga0132256_1005135002	3300015372	Arabidopsis Rhizosphere	LALWLLSPPAEQPDRHGSVEVTQVQEKSWTVEVKDLGAADTKDQARTAANR*
Ga0132257_1002241712	3300015373	Arabidopsis Rhizosphere	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR*
Ga0132255_1007403741	3300015374	Arabidopsis Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDQARTAANR*
Ga0190265_103514552	3300018422	Soil	VAGLALWLLSPSADQQAKQGTVEVTQMQERSWTVEVKDLGATDTTDSARTAANR
Ga0190274_105751602	3300018476	Soil	VAGLALWMLSPPAEQEGRHGSVEVTQVQERSWTVEVKDLGATDTTEPTRTAANR
Ga0173481_102195162	3300019356	Soil	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0173481_107176101	3300019356	Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR
Ga0190264_101555272	3300019377	Soil	VAGLALWLLTPPADQQAKQGSVEVTQVQERSWTVEVKDLGATDTTDSARTAANR
Ga0247792_10719101	3300022880	Soil	VMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207696_10814211	3300025711	Switchgrass Rhizosphere	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207642_101832932	3300025899	Miscanthus Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207688_103053112	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0207680_100735032	3300025903	Switchgrass Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0207649_100307772	3300025920	Corn Rhizosphere	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207652_107074821	3300025921	Corn Rhizosphere	RAFKAGGGMAMDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207681_102038663	3300025923	Switchgrass Rhizosphere	AGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTSRTAANR
Ga0207689_100137055	3300025942	Miscanthus Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207712_100187314	3300025961	Switchgrass Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207668_100047379	3300025972	Switchgrass Rhizosphere	VAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0207640_102896243	3300025981	Corn Rhizosphere	AGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207658_100137351	3300025986	Switchgrass Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDSARTAANR
Ga0207677_103271261	3300026023	Miscanthus Rhizosphere	AGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR
Ga0207674_108031132	3300026116	Corn Rhizosphere	AFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0207698_114741371	3300026142	Corn Rhizosphere	AAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207428_100496994	3300027907	Populus Rhizosphere	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDAARTAANR
Ga0207428_100547194	3300027907	Populus Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR
Ga0209382_104082723	3300027909	Populus Rhizosphere	MVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAADADAPARTAANR
Ga0268265_107384112	3300028380	Switchgrass Rhizosphere	MAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0268265_108523792	3300028380	Switchgrass Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEKPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0268264_123737602	3300028381	Switchgrass Rhizosphere	EGFMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0247828_109780012	3300028587	Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGKHGTVEVVQMQEKSWQVEVKDLGAADAKEAARTAANR
Ga0310888_105896911	3300031538	Soil	WLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0310887_101668983	3300031547	Soil	AAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310886_106603462	3300031562	Soil	GVMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0310886_107152132	3300031562	Soil	IDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310813_113825412	3300031716	Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADAKEPARTASNR
Ga0307406_102576651	3300031901	Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310891_100985362	3300031913	Soil	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARPAANR
Ga0310885_100754623	3300031943	Soil	LALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310884_102464391	3300031944	Soil	LSPPPEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0307416_1003688403	3300032002	Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPSKHGTVEVTQVEERSWTVEVKDLGAADTKDTARTAANR
Ga0307416_1030710922	3300032002	Rhizosphere	ALWLLSPSADQAKRGSVEVTQVQERSWTVEVKDLGATDTTDSTRTAANR
Ga0310897_103399971	3300032003	Soil	GGVMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPSRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0307411_103261733	3300032005	Rhizosphere	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGKHGTVEVVQMQEKSWQVEVKDLGAADTKEAARTAANR
Ga0310906_112209661	3300032013	Soil	FAVAGLALWLLSPPAEQPGRHGSVEVTQVEEKSWTVEVKDLGAADTKDTARTAANR
Ga0310899_101814572	3300032017	Soil	DARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0310890_101116213	3300032075	Soil	MAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310889_100906203	3300032179	Soil	VAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTART
Ga0310810_103144201	3300033412	Soil	VAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTA
Ga0310810_103971323	3300033412	Soil	MVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR
Ga0310810_113240961	3300033412	Soil	SPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0314793_157845_45_257	3300034668	Soil	MVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKDTARTAANR
Ga0373959_0222071_8_157	3300034820	Rhizosphere Soil	LWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095716

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences