Basic Information | |
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Family ID | F095692 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 48 residues |
Representative Sequence | MSLPDFSTQAELFSTAGLSASLFAPTDRYRLFAKLVYPRLAA |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 27.62 % |
% of genes near scaffold ends (potentially truncated) | 93.33 % |
% of genes from short scaffolds (< 2000 bps) | 93.33 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (68.571 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (7.619 % of family members) |
Environment Ontology (ENVO) | Unclassified (19.048 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (31.429 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 32.86% β-sheet: 0.00% Coil/Unstructured: 67.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Anaerobic Enrichment Culture Sediment Freshwater Freshwater Lake Sediment Freshwater Lake Freshwater Microbial Mat Sediment Peatland Bog Forest Soil Bog Peatland Freshwater Wetlands Freshwater Wetlands Freshwater Estuarine Natural And Restored Wetlands Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Peatlands Soil Soil Arctic Peat Soil Soil Soil Soil Soil Untreated Peat Soil Natural And Restored Wetlands Fen Bog Tropical Forest Soil Soil Soil Soil Fen Palsa Bog Peat Soil Rhizosphere Arabidopsis Rhizosphere Anaerobic Digestor Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ICChiseqgaiiFebDRAFT_141069712 | 3300000363 | Soil | MSLPNFSTQSNLFSTAAVSGNLFGETDRYRLFAQLIY |
Ga0062592_1015891773 | 3300004480 | Soil | MSLPDFSTQSYLFSTAGLSGSLFGPEDRYRIFAQVIYPRLVA |
Ga0071345_11126761 | 3300005261 | Anaerobic Enrichment Culture | MSLPTFSTQSELFSTTGLSTHLFGRTDRYRLFAKLVYPPLSRARAALEKC |
Ga0066706_114655731 | 3300005598 | Soil | MSLPSFSTQSELFSTAGLSANLFGPTDRYRLFAQLVYPKLAGTRPTLEKCYCA |
Ga0070766_112684931 | 3300005921 | Soil | MSLPAFSAQSELFSTAALSGDLFAATDRYRLFALKVYPALAG |
Ga0079037_1023049821 | 3300006224 | Freshwater Wetlands | MSLPSFSTQGELFSTAGLSASLFLETDRYRLFAKLVYPHVARARAKLEKCYC |
Ga0066658_105486391 | 3300006794 | Soil | MSLPTFSSQSELFSTAALSASLFPETDRYRLFGKVIYPLLAEARPTLEKCYCPENGRTA |
Ga0105105_106442381 | 3300009009 | Freshwater Sediment | MSLPAFTTQAELFSTAGLSGGLFGPTDRYRLFALKIYPVLAQA |
Ga0105105_109196152 | 3300009009 | Freshwater Sediment | MSLPHFSTQGELFSTAGLSANLFAETDRYRFFAKLVYSPLVG |
Ga0099829_113104121 | 3300009038 | Vadose Zone Soil | MSLPSFSTQSELFSTAGLSGSLFPKDDRYRLFARLVYPEDAVDSTAFFIVLTVFEL |
Ga0099827_118853261 | 3300009090 | Vadose Zone Soil | MSLPAFSSQSELFSTAALSGTLFPEYDRYRLFGKLIYPQVAAE |
Ga0113563_128450391 | 3300009167 | Freshwater Wetlands | MSLPDFSTQAELFSTAGISAPLFAPTDRYRLFAKLVYPRLVAQRAALE |
Ga0115028_115249132 | 3300009179 | Wetland | MSLPHFSTQGELFSTAGLSASLFAETDRYRLFAKLVYPHLVSARSKLEKCYCADN |
Ga0116221_14322592 | 3300009523 | Peatlands Soil | MSLPSFSTQAELFSTAGLSASLFAQTDRYRLFAKLVYPPLAAARPALEKCYCLEN |
Ga0116117_11903371 | 3300009635 | Peatland | MSLPVFTTQAELFSTAGLAGGLFGPQDRYRLFALKVYPVLGQ |
Ga0116118_11431762 | 3300009637 | Peatland | MSLPEFSTQAELFSTAGLSASMFAPTDRYRLFAKLVYPLLAAARATLEKCYCLEN |
Ga0134070_103854762 | 3300010301 | Grasslands Soil | MSLPDFSTQSALFATARLDGQFFAPNDRYRLFAQKIYP |
Ga0126379_138196422 | 3300010366 | Tropical Forest Soil | MSLPEFSTQSYLFSTAALSSSLFPKDDRYRLFATLVYPRLVK |
Ga0134121_115476633 | 3300010401 | Terrestrial Soil | MSLPDFSTQSSLFSTAALSGNLFAQTDRYRLFGQVIYPKLVAVRPELAA |
Ga0137383_111052122 | 3300012199 | Vadose Zone Soil | MSLPTFSSQSELFSTAALSASLFPETDRYRLFGKVIYPLLAEA |
Ga0137386_111701492 | 3300012351 | Vadose Zone Soil | MSLPDFSTQAELFSTAGLSSSLFVEDDRYRLFARLVYPALVATRTTLAQCYC |
Ga0137361_115089751 | 3300012362 | Vadose Zone Soil | MSLPAFSTQSELFSTAALSGSLFAPTDRYRLFAQKVY |
Ga0153916_131248251 | 3300012964 | Freshwater Wetlands | MSLPAFCTQAELFSTAGLSGRFFAATDRYRLFAQKVYPVLAQLRGQLQVCYCAED |
Ga0126369_129986951 | 3300012971 | Tropical Forest Soil | MSLPDFSTQSSLFSTAALSGRLFAPEDRYALFARKIY |
Ga0126369_134242611 | 3300012971 | Tropical Forest Soil | MSLPQFSTQSFLFSTAALGSNLFPEADRYRLFAKLVYPRLVKVRE |
Ga0181527_10449314 | 3300014153 | Bog | MSLPAFSTQAELFSTAGLSTSLFAKTDRYRLFAKLVYPHLAAARTPWRS |
Ga0181538_105776212 | 3300014162 | Bog | MSLPAFSTQAELFSTAALSASLFDQTDRYRLFGKLVYPCLAQVRSELAGGYCLENGRS |
Ga0075360_11080683 | 3300014261 | Natural And Restored Wetlands | MSLPAFSTQAELFSTAGLSGCLFGPTDRYRLFALKIYPVLVEARSQLQGCYCA |
Ga0075321_11348171 | 3300014300 | Natural And Restored Wetlands | MSLPEFSTQTELFSTAGLSASLFAPADRYRLFAKLVYPSLAAARPVLEKCYCPENGRVA |
Ga0075323_11073161 | 3300014301 | Natural And Restored Wetlands | MSLPAFSTQSELFSTAALTSRLFAESDRYRLFAKLVYPRLAAQRTS |
Ga0182013_105482751 | 3300014492 | Bog | MSLPNFSGQAERFSTAAASASLFAEDDRYRLFAKVVYPCLVASRATLELCCCTGNGRVA |
Ga0182017_103723371 | 3300014494 | Fen | MSLPTFSAQGELFSTAGLSASLFAQTDRYRLFAKLVYPALVA |
Ga0182011_105475991 | 3300014496 | Fen | MSLPVFSTQAELFSTAGLSGHLFAPTDRYRLFAQKV |
Ga0182019_109887521 | 3300014498 | Fen | MSLPNFSTQAELFSTAGLSASLFAQTDRYRLFAKL |
Ga0182019_110714821 | 3300014498 | Fen | MSLPAFSTQSELFSTAALSGRLFPESDRYRLFAKLVYPRLAAQRAS |
Ga0182019_114875561 | 3300014498 | Fen | MSLPEFSTQSELFSTVGCARQLFAPTDRFRLFAQKVYPV |
Ga0181536_101147601 | 3300014638 | Bog | MSLPDFSTQAELFSTAGLSASMFAPTDRYRLFAKLVYPRLA |
Ga0181536_103110583 | 3300014638 | Bog | MSLPVFSSQSQLFSTAALTGKLFGPTDRFRLFAHKVYPVLAAT |
Ga0182027_122155152 | 3300014839 | Fen | MSLPDFSTQAELFSTAGLSASLFAQTDRYRLFAKLVYPPLAAARSALEKCYCAE |
Ga0180076_10980712 | 3300014867 | Soil | MSMPAFSPQGELFSTAGLSASLFAATDRYRLFAKLVYPHLVRARAQLEKC |
Ga0180072_10981621 | 3300015250 | Soil | MSLPAFSTQAELFSTAGLSASLFTPTDRYRLFAKLVYPHLAASRAALAKCYCGDNG |
Ga0132256_1022481133 | 3300015372 | Arabidopsis Rhizosphere | MSLPDFSTQAELFSTAGLSGSLFAQTDRYRLFAKLVYPRLAAARAALE |
Ga0182040_107656721 | 3300016387 | Soil | MSLPTFSTQAELFSTAGLSSHLFAETDRYRLLAKLVYPHLVRARAT |
Ga0187868_13238012 | 3300018002 | Peatland | MSLPDFSAQAQLFSTAGLSTSMFAPTDRYRLFAKLVYP |
Ga0187888_12583241 | 3300018008 | Peatland | MSLPAFSTQSELFSTAGISGSLFADTDRYRLFARKVYPALARV |
Ga0187872_103347362 | 3300018017 | Peatland | MSLPDFSAQAQLFSTAGLSTSMFAPTDRYRLFAKLVYPRLAATRATLEKCY |
Ga0187864_101772981 | 3300018022 | Peatland | MSLPAFSTQSELFSTAGLSGSLFADTDRYRLFARKVYPALARV |
Ga0187864_103971861 | 3300018022 | Peatland | MSLTSHLPLSLPVFSSQSQLFSTAALTGKLFGPTDRFRLFAHKVYPVLA |
Ga0182022_13657422 | 3300019785 | Fen | MSLPGFSTQAELFSTAGLSTNLFAETDRYRLFAKLIYPHLAGARGALEKCYCPEKRACRH |
Ga0163151_100510533 | 3300020057 | Freshwater Microbial Mat | MVSLPAFSTQEELFSTAAGLSSSLFASTDRYRLFAQVVYPAVATMRGELEKCYCAERGRFREG |
Ga0194110_106401511 | 3300020084 | Freshwater Lake | MSLPNFSTQSELFSTASLSAQLFAEGDRYRLFAKLVYPKLAR |
Ga0196977_10366391 | 3300020146 | Soil | MSLPDFSTQGSLFSTAGLSRSLSAENDRYRLFAKLVYPCLVKMRPQLETCYCPD |
Ga0163150_100131922 | 3300020195 | Freshwater Microbial Mat | MVSLPAFSTQAELFSTAAGLSSSLFASTDRYRLFAQVVYPAVATMRGELEKCYCAERGRFREG |
Ga0210339_15262941 | 3300021332 | Estuarine | MSLPAFSTQAELFSTAGLSASLFPESDRYRLFAKLVYPRLAANRAVLG |
Ga0247666_11152062 | 3300024323 | Soil | MSLPDFSTQSSLFSTAALSGNLFAQTDRYRLFGQVIYPKLVEVRPE |
Ga0209498_12140011 | 3300025135 | Sediment | VVWGPLTMSLPVFSTQGELFSTALLSRDLFSVTDCYRLFGKLVYPKLAQARGALERCYCAENGRTGS |
Ga0208103_10500533 | 3300025436 | Freshwater | MSLPAFSTQAELFSTAGLSGQLFEATDRYRLFAQK |
Ga0210083_10616222 | 3300025521 | Natural And Restored Wetlands | MSLPDFSTQSSLFSTALLSGSLFPENDRYRIFAQVVYPRLVAARSQLESCYC |
Ga0207927_10573292 | 3300025579 | Arctic Peat Soil | MSLPVFSTQAELFSTAGLSSQLFAPTDCYRLFAQKVYPVLAQAR |
Ga0209540_101972891 | 3300025888 | Arctic Peat Soil | MSLPAFTTQAELFSTAGLSGCLFGPTDRYRLFALKIYPVLVQARSQLQD |
Ga0209202_10629973 | 3300025902 | Anaerobic Digestor Sludge | MRLPHFSTQSALFSTAALSARLFGPAAPYRLFAQRVYPRLVRARPALEKCYCAENGASRWSRC |
Ga0179587_109690872 | 3300026557 | Vadose Zone Soil | MSLPDFSTQSPLFSVLPPPSQLFGPEDRFRIFAQKIYPRSVAARPP |
Ga0207722_10358021 | 3300027003 | Tropical Forest Soil | MSLPPFSTQSELFSTAALSGSLFPETDRYRLFAKLVYPRLAVQRAT |
Ga0209040_104046131 | 3300027824 | Bog Forest Soil | MSLPLFSPQSELFSTAALSGTLFAQEDRYRLFAKLIYP |
Ga0209580_106736501 | 3300027842 | Surface Soil | MSLPEFSTQSYLFSTAALSSSLFPKDDRYRLFATLVYPR |
Ga0209668_109980253 | 3300027899 | Freshwater Lake Sediment | MSLPAFSTQSELFSTAGCSQELFPATDRFRLFARKVYPALAQTRSRLEACY |
Ga0265338_108441942 | 3300028800 | Rhizosphere | MSLPVFSTQAELFSTAGLSGQLFAPTDRYRLFALKVYP |
Ga0311329_108706722 | 3300029907 | Bog | MSLPDFTTQAELFSTAGRAADLFGPRDRFRLFALKVYPELARTRPQL |
Ga0311326_103055403 | 3300029917 | Bog | MSLPVFTTQAELFSTAGLAGGLFGPQDRYRLFALKVYP |
Ga0311331_114238791 | 3300029954 | Bog | MSLPAFSTQAELFSTAGLSGSLFAGDDRHRLFALKVYPALARIRAKLEACYGADNGRIAI |
Ga0311338_112246263 | 3300030007 | Palsa | MSLPVFSTQAELFSTAALSGSLFAATDRYRLFAQKVYPALAGIRGRLE |
Ga0311348_103575201 | 3300030019 | Fen | MSLPEFSGQAQLFSTAALTGKLFGPTDRYRLMAQKVYPVLVQTRAELERGYCV |
Ga0302274_101673363 | 3300030041 | Bog | MSLPSFSTPSELFSTAGLSGNLFDADDRYRLFAQKVFPVVARARAKLESCYCA |
Ga0302274_102001032 | 3300030041 | Bog | MSLPVFTTQAELFSTAGLAADLFGPQDRFRLFALKVYPELVRARPGLQGVFIFAYRI |
Ga0302195_103871511 | 3300030051 | Bog | MSLPDFTTQAELFSTASRAADLFGPQDRFRLFALKVYPALAQTRPQLEGCYCA |
Ga0302179_105460501 | 3300030058 | Palsa | MSMPSFSTQAELFSTAGLSGSLFAPTDRYRLFAQLVYPRLAQSRSALEKCYSADNGRVAL |
Ga0311333_109557673 | 3300030114 | Fen | MSLPDFSTQAELFSTAGLSASLFAQTDRYRLFAKLVYPPLAA |
Ga0311370_121552893 | 3300030503 | Palsa | MSMPSFSTQAELFSTAGLSGSLFAPTDRYRLFAQLVYPRLAQSRSALE |
Ga0311366_106646351 | 3300030943 | Fen | MAFIAVNVMSLPVFSTQTELFSTAGLSGSLFGATNRYRLFAQKVYPVLVR |
Ga0302323_1023705112 | 3300031232 | Fen | MSLPAFSTQAELFSTAGLSASLFAETDRYRLFAKLIYPHLAVARTALEKCYCAENG |
Ga0302323_1031606852 | 3300031232 | Fen | MSLPSFSTQSELFSTAALSASLFAPTDRYRLFAQLVYPRLA |
Ga0302297_10067613 | 3300031244 | Fen | MSLPVFSTQAELFSTAGLSGQLFDDSDRYRLFAQKVYPVLAQARA |
Ga0302321_1023899293 | 3300031726 | Fen | MSLPDFSTQAELFSTAGLSASLFAQTDRYRLFAKLVYPP |
Ga0302321_1035437641 | 3300031726 | Fen | MSLPEFSGQAQLFSTAALTGKLFGPTDRYRLMAQKVYPVLVQTRAEL |
Ga0318492_107282692 | 3300031748 | Soil | MSLPTFCTQSELFSTAGLSGSLFAPDDRYRLFAKLIYPAVAGCRATLEK |
Ga0315899_107694921 | 3300031784 | Freshwater | MSLPSFSTQGSLFSLSSVSSSLFPQTDRYRLFATLVFPRIVA |
Ga0302319_105324342 | 3300031788 | Bog | VFTTQAELFSTAGLAADLFGPQDRFRLFALKVYPELVRARPGLQGVFIFAYRI |
Ga0310912_105078631 | 3300031941 | Soil | MSLPQFCTQSYLFSTAALSSSLFPKNDRYRLFATLVYPQL |
Ga0310913_105033961 | 3300031945 | Soil | MSLPEFSTQSYLFSTAALSSSLFSKDDRYRLFATLVYPRLVKVRPQLTAC |
Ga0315274_111007843 | 3300031999 | Sediment | MSLPRFSTQAELFSTAGLSASLFAPTGRYRLFAQLVYPRLVAQRDPLAKGYGADNGRVALEP |
Ga0315283_120378891 | 3300032164 | Sediment | MSLPAFSTQSELFSTAALTSSLFPESDRYRLFAKLVYPRLAAQRASLEA |
Ga0315286_105534131 | 3300032342 | Sediment | MGFVPRNIMSLPAFTTQAELFSTAGLSGCLFGPTDRYRLFALKIYPV |
Ga0315287_129312471 | 3300032397 | Sediment | MSLPDFSTQAELFSTAGLSASLFTPTDRYRLFAKLVYPHLAASRAALAKCYCADNGR |
Ga0315275_101517051 | 3300032401 | Sediment | MSLPDFSTQAELFSTAGLSASLFAPTDRYRLFAKLVYPRLAA |
Ga0316622_1011056102 | 3300033416 | Soil | MSLPHFSTQGELFSTAGLSASLLAETDRYRLLAQLVYPPLVRARAKLEPC |
Ga0316620_125333912 | 3300033480 | Soil | MSLPVFSTQAELFSTAGLSGQLFAPTDRYRLFAQKVYPILAQTRSQL |
Ga0316629_118455012 | 3300033483 | Soil | MSVPDFSTQTELFSTAGLSGRLFAPEDRYRLFGKLVYPVLAGARPTLETCYCLENGRTAL |
Ga0316626_120865421 | 3300033485 | Soil | MSVPDFSTQTELFSTAGLSGSLFAPADRYRLFGKLVYPVLAGARP |
Ga0316621_112027261 | 3300033488 | Soil | MSLPHFSTQGELFSTAGLSASLFAETDRYRLFAKLVYPHLVGARPK |
Ga0316616_1008333021 | 3300033521 | Soil | MSMPAFSPQGELFSTAGLSASLFAATDRYRLFAKLVYPHLV |
Ga0316616_1045104242 | 3300033521 | Soil | MSLPPFSTQSELFSTAGLSTSLFAPTDRYRLFGKLVYPRLAAVRDT |
Ga0334844_007218_2137_2280 | 3300033743 | Soil | TQAELFSTAGLSASLFAQTDRYRLFAKLVYPPLAAARSALAPVYELA |
Ga0334810_161449_408_539 | 3300033890 | Soil | MSLPVFSTQAELFSTAGLSGQLFAPTDRYRLFAQKVYPVLAQTR |
Ga0326724_0466153_3_122 | 3300034091 | Peat Soil | MSLPTFSAQGELFSTAGLSASLFAQTDRYRLFAKLVFPAL |
Ga0370490_0003731_948_1100 | 3300034128 | Untreated Peat Soil | MSLPVFTTQAELFSTAGLSGCLFGPTDRYRLFALKIYPVLAQARSQLEGC |
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