Metagenome / Metatranscriptome Family F095586

Basic Information
Family ID	F095586
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	56 residues
Representative Sequence	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Number of Associated Samples	91
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.71 %
% of genes near scaffold ends (potentially truncated)	37.14 %
% of genes from short scaffolds (< 2000 bps)	86.67 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (39.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (26.667 % of family members)
Environment Ontology (ENVO)	Unclassified (53.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.476 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1JGI20154J14316_1001111711 2ACM4_10159252 3Ga0066610_100726351 4Ga0066611_100818785 5Ga0066605_102086472 6Ga0066605_102381211 7Ga0066605_102569512 8Ga0073579_10322785 9Ga0070742_101288351 10Ga0075448_101699641 11Ga0101441_1274243 12Ga0101442_1202463 13Ga0105737_10501032 14Ga0105349_102827901 15Ga0102886_10673272 16Ga0102826_10159022 17Ga0115566_103677012 18Ga0114996_108735081 19Ga0114994_103420871 20Ga0114994_109244901 21Ga0115008_106621791 22Ga0115008_116170681 23Ga0115560_11170703 24Ga0115565_100063069 25Ga0115555_11551591 26Ga0115570_104732042 27Ga0115572_107341451 28Ga0114999_112604631 29Ga0129327_102110802 30Ga0181565_102206292 31Ga0181552_102114631 32Ga0181607_100839522 33Ga0181607_104633201 34Ga0181577_102802353 35Ga0181585_106095442 36Ga0181576_106672121 37Ga0181569_104074002 38Ga0181600_103323552 39Ga0181601_102036123 40Ga0181561_102166571 41Ga0181560_103571062 42Ga0181559_101273194 43Ga0181592_103376761 44Ga0181592_106159021 45Ga0181593_101073294 46Ga0181591_101292101 47Ga0181591_106999841 48Ga0181591_107034641 49Ga0181554_12327952 50Ga0181575_102222161 51Ga0206125_103942992 52Ga0206128_11760252 53Ga0206127_11573012 54Ga0206131_101707212 55Ga0206130_100210324 56Ga0206130_101392453 57Ga0206130_102104862 58Ga0211685_10376931 59Ga0211688_100130512 60Ga0211690_10084684 61Ga0211504_10207152 62Ga0211505_11234522 63Ga0211686_102091391 64Ga0211686_102429221 65Ga0211577_103090092 66Ga0213866_101562041 67Ga0213866_105476512 68Ga0222717_102297783 69Ga0255779_10433621 70Ga0255783_102908232 71Ga0255769_102087692 72Ga0233427_103157612 73Ga0255784_103593641 74Ga0233432_101576911 75Ga0233432_103065261 76Ga0255759_101105563 77Ga0232122_10276123 78Ga0228636_10960872 79Ga0228655_10362701 80Ga0233444_102303091 81Ga0228629_10890633 82Ga0228618_10550182 83Ga0209405_10182034 84Ga0209659_10859611 85Ga0209659_11771841 86Ga0209140_10331203 87Ga0209374_10556001 88Ga0209252_10641872 89Ga0209631_103440672 90Ga0209630_103153861 91Ga0209425_102680722 92Ga0228607_10531843 93Ga0209710_10550843 94Ga0209403_100238615 95Ga0233450_100235796 96Ga0257121_12078481 97Ga0256417_11718882 98Ga0257126_10479152 99Ga0228617_11038621 100Ga0308021_103981341 101Ga0308018_100501933 102Ga0315331_107744881 103Ga0308000_103479992 104Ga0315320_106081962 105Ga0315315_117389721
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1JGI20154J14316_1001111711 2Ga0181592_103376761 3Ga0181591_107034641 4Ga0211686_102091391 5Ga0255779_10433621
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 1JGI20154J14316_1001111711 2Ga0181592_103376761 3Ga0181591_107034641 4Ga0211686_102091391 5Ga0255779_10433621
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.45% β-sheet: 0.00% Coil/Unstructured: 46.55%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF06941	NT5C	30.48
PF01124	MAPEG	8.57
PF08803	ydhR	5.71
PF08238	Sel1	2.86
PF13560	HTH_31	2.86
PF04828	GFA	2.86
PF00239	Resolvase	1.90
PF07883	Cupin_2	0.95
PF13521	AAA_28	0.95
PF01471	PG_binding_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	30.48
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.86
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.90
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.81 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	39.05 %
Unclassified	root	N/A	36.19 %
Viruses	superkingdom	All Organisms → Viruses	24.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.48 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.81 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	5.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.90 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	3.81 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.95 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Marinilabiliales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.95 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Marinifilaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinifilaceae	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.95 %
Unclassified	root	N/A	36.19 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Labilibaculum	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinifilaceae → Labilibaculum	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.95 %
Unclassified	root	N/A	36.19 %
Xanthomarina	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina	0.95 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Labilibaculum antarcticum	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinifilaceae → Labilibaculum → Labilibaculum antarcticum	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	24.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.95 %
Unclassified	root	N/A	36.19 %
Xanthomarina gelatinilytica	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	0.95 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022933\|Ga0233427_10315761	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10157691	All Organisms → Viruses → Predicted Viral	1183	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10306526	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10230309	Not Available	836	Open in IMG/M
3300001348\|JGI20154J14316_10011117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5777	Open in IMG/M
3300001831\|ACM4_1015925	Not Available	1095	Open in IMG/M
3300004276\|Ga0066610_10072635	All Organisms → Viruses → Predicted Viral	1209	Open in IMG/M
3300004277\|Ga0066611_10081878	All Organisms → Viruses → Predicted Viral	1166	Open in IMG/M
3300004279\|Ga0066605_10208647	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300004279\|Ga0066605_10238121	Not Available	685	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	12.38%
Inlet	Environmental → Aquatic → Marine → Inlet	5.71%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	35.24%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.81%
Oceanic	Environmental → Aquatic → Marine → Oceanic	9.52%
Pelagic	Environmental → Aquatic → Marine → Pelagic	13.33%
Unclassified	Environmental → Aquatic → Marine → Unclassified	20.00%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	26.67%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	13.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	12.38%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	9.52%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	5.71%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.81%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.90%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.95%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.95%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.95%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.95%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	14.29%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	7.62%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.81%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.86%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	1.90%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.95%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.95%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.90%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	0.95%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	6.67%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.81%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	26.67%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	8.57%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	6.67%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.81%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.86%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001348	Pelagic Microbial community sample from North Sea - COGITO 998_met_04	Environmental	Open in IMG/M
3300001831	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l	Environmental	Open in IMG/M
3300004276	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m	Environmental	Open in IMG/M
3300004277	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m	Environmental	Open in IMG/M
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental	Open in IMG/M
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental	Open in IMG/M
3300006621	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point	Environmental	Open in IMG/M
3300006622	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20154J14316_1001111711	3300001348	Pelagic Marine	MKNSTHYIKTSFRHEDYLNDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR*
ACM4_10159252	3300001831	Marine Plankton	MKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSR*
Ga0066610_100726351	3300004276	Marine	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0066611_100818785	3300004277	Marine	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVP
Ga0066605_102086472	3300004279	Marine	MKNSTHYIKTSFRHDDYLKDILERAGTLTKLSQSELIRNACLGQYVPMLQTASVPRKG*
Ga0066605_102381211	3300004279	Marine	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK*
Ga0066605_102569512	3300004279	Marine	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR*
Ga0073579_10322785	3300005239	Marine	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVP
Ga0070742_101288351	3300005942	Estuarine	STHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0075448_101699641	3300006352	Marine	MNNSTHYIKTSFRHDDYLKDILKRAATLTKMTQSELIRNACLGQYVPMLQTASVPKRG*
Ga0101441_1274243	3300006621	Marine Surface Water	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNAYLGQYVPMLQTASVLNSK*
Ga0101442_1202463	3300006622	Marine Surface Water	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTA
Ga0105737_10501032	3300007862	Estuary Water	MNNSTQYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0105349_102827901	3300008253	Methane Seep Mesocosm	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0102886_10673272	3300009052	Estuarine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0102826_10159022	3300009054	Estuarine	MKNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0115566_103677012	3300009071	Pelagic Marine	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVP
Ga0114996_108735081	3300009173	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTA
Ga0114994_103420871	3300009420	Marine	MKISTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0114994_109244901	3300009420	Marine	MKNSTHYIKTSFRHDDYLKDILARAATLTKLSQSELIRNACLGQYVPMLQTASVP*
Ga0115008_106621791	3300009436	Marine	MKNSTQYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0115008_116170681	3300009436	Marine	MNNSTQYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPRKG*
Ga0115560_11170703	3300009447	Pelagic Marine	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPML
Ga0115565_100063069	3300009467	Pelagic Marine	MKNSTHYIKTPFRHDDQLKDILESAEALTKLSQSELIRNACLGQYVPILQTESVPKRG*
Ga0115555_11551591	3300009476	Pelagic Marine	MNNSKHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPRKG*
Ga0115570_104732042	3300009496	Pelagic Marine	MKNSTHYIKTSFRHEDYLNDILERAATLTKLSQSELIRNACLGQYVPMLQTASVP
Ga0115572_107341451	3300009507	Pelagic Marine	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTAS
Ga0114999_112604631	3300009786	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPRLQTASVPKRG*
Ga0129327_102110802	3300013010	Freshwater To Marine Saline Gradient	MKNLTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG*
Ga0181565_102206292	3300017818	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181552_102114631	3300017824	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0181607_100839522	3300017950	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0181607_104633201	3300017950	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181577_102802353	3300017951	Salt Marsh	MKNSTHYIKTSFRHGDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0181585_106095442	3300017969	Salt Marsh	MKNSTHYIKTSFRYDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181576_106672121	3300017985	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGNLTKLSQSELIRNACLGQYVPMLQTASV
Ga0181569_104074002	3300017986	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASIPNSK
Ga0181600_103323552	3300018036	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTQLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0181601_102036123	3300018041	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0181561_102166571	3300018410	Salt Marsh	KKRSYKMKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0181560_103571062	3300018413	Salt Marsh	LQNRKKRSYKIKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181559_101273194	3300018415	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0181592_103376761	3300018421	Salt Marsh	MKNSTHYIKTSLRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPM
Ga0181592_106159021	3300018421	Salt Marsh	KKRSFKMKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181593_101073294	3300018423	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGELSKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181591_101292101	3300018424	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLMKLSQSELIRNACLGQYVPMLQIASVQKSK
Ga0181591_106999841	3300018424	Salt Marsh	KMKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0181591_107034641	3300018424	Salt Marsh	TSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0181554_12327952	3300020052	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVTNSK
Ga0181575_102222161	3300020055	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLMKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0206125_103942992	3300020165	Seawater	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0206128_11760252	3300020166	Seawater	MKNSTHYIKTPFRHDDQLKDILESAEALTKLSQSELIRNACLGQYVPILQTESVPKRG
Ga0206127_11573012	3300020169	Seawater	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPRKG
Ga0206131_101707212	3300020185	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVINAK
Ga0206130_100210324	3300020187	Seawater	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0206130_101392453	3300020187	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVP
Ga0206130_102104862	3300020187	Seawater	MKNSTHYIKTSFRHEDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR
Ga0211685_10376931	3300020253	Marine	MNNSTHYIKTSFRHDDYIKDLLERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0211688_100130512	3300020317	Marine	MKNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR
Ga0211690_10084684	3300020335	Marine	MSNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0211504_10207152	3300020347	Marine	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0211505_11234522	3300020352	Marine	MKNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPML
Ga0211686_102091391	3300020382	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNAYLGKYVSHAADSICS
Ga0211686_102429221	3300020382	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0211577_103090092	3300020469	Marine	MKNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNARLGQYVPMLQTASVPKRG
Ga0213866_101562041	3300021425	Seawater	FRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0213866_105476512	3300021425	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVP
Ga0222717_102297783	3300021957	Estuarine Water	KGSFKMKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0255779_10433621	3300022922	Salt Marsh	LLLNTKKRSYKMKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0255783_102908232	3300022923	Salt Marsh	STHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0255769_102087692	3300022927	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVP
(restricted) Ga0233427_103157612	3300022933	Seawater	MKNSTHYIKTSFRHDDYLKDILERAATLTNPSQSELIRNACLGQYVPMLQTASVP
Ga0255784_103593641	3300023108	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPD
(restricted) Ga0233432_101576911	3300023109	Seawater	FRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNSK
(restricted) Ga0233432_103065261	3300023109	Seawater	MNNSTHHIKTSFRHDDYIKDILERAATLTKLSQSELIRNGCLGQYVPMLQTAIVPKRG
Ga0255759_101105563	3300023178	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVPKSK
Ga0232122_10276123	3300023709	Salt Marsh	MKNSTHYIKTSFRHDDYLKDILERAGELTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0228636_10960872	3300024191	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASV
Ga0228655_10362701	3300024236	Seawater	MKNPTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
(restricted) Ga0233444_102303091	3300024264	Seawater	MKNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0228629_10890633	3300024296	Seawater	MKNSTHYIKTSFRHYDYLKDILERAGQLTKLSQSELIRNACLGQYVP
Ga0228618_10550182	3300024315	Seawater	MKNSTHYIKTSFRHDYYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0209405_10182034	3300025620	Pelagic Marine	MKNSTHYIKTSFRHEDYLNDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRR
Ga0209659_10859611	3300025658	Marine	MNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTAS
Ga0209659_11771841	3300025658	Marine	MKNSTHYIKTSFRHDDYLKDILDRAGKLTNLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0209140_10331203	3300025688	Marine	MKNSSHYIKTSFLHDDYLKDILERAGKLTKLSQVELIRNACLGQYVPMLQTVSETNAK
Ga0209374_10556001	3300025705	Marine	MKNSTHYIKTSFRHDDYLKDILDRAGKLTNLSQSELIRNACLGQYVPM
Ga0209252_10641872	3300025719	Marine	MKNSTHYIKTSFRHDDYLKDILDRAATLTNLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0209631_103440672	3300025890	Pelagic Marine	KMKNSTHYIKTSFRHDDYLKDILERAGKLTKLSQSELIRNACLGQYVPMLQTASVINAK
Ga0209630_103153861	3300025892	Pelagic Marine	MKNSTHYIKTSFRHDDYIKDILERAATLTKLFQSELIQNACLGQYVPMLQTASVPKRG
Ga0209425_102680722	3300025897	Pelagic Marine	MKNSTHYIKTPFRHDDQLKDILESAEALTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0228607_10531843	3300026517	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVQNPK
Ga0209710_10550843	3300027687	Marine	MKISTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0209403_100238615	3300027839	Marine	MNNSTHYIKTSFRHDDYIKDILKRAATLTKLSQSELIRNACLGQYVPMLQTA
Ga0233450_100235796	3300028115	Salt Marsh	STHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPDAK
Ga0257121_12078481	3300028198	Marine	MNNSTHYIKTSFRHDDYLKDILERAAALTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0256417_11718882	3300028233	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVP
Ga0257126_10479152	3300028287	Marine	MKNSTHYIKTSFRHDEYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0228617_11038621	3300028297	Seawater	MKNSTHYIKTSFRHDDYLKDILERAGQLTKLSQSELIRNACLGQYVPMLQTASVPNPK
Ga0308021_103981341	3300031141	Marine	MKNSTHYIKTSFRHGDYIKDLLERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0308018_100501933	3300031655	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRGWRFQLIIAH
Ga0315331_107744881	3300031774	Seawater	KTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG
Ga0308000_103479992	3300031848	Marine	MNNSTHYIKTSFRHDDYIKDILERAATLMKLSQSELIRNACLGQYVPMLQTVYVPKRG
Ga0315320_106081962	3300031851	Seawater	MNNSTQYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPNSK
Ga0315315_117389721	3300032073	Seawater	IVGNRSFKMNNSTHYIKTSFRHDDYLKDILERAATLTKLSQSELIRNACLGQYVPMLQTASVPKRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters