Metagenome / Metatranscriptome Family F095563

Basic Information
Family ID	F095563
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	43 residues
Representative Sequence	MNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Number of Associated Samples	88
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.35 %
% of genes near scaffold ends (potentially truncated)	37.14 %
% of genes from short scaffolds (< 2000 bps)	51.43 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (80.952 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (21.905 % of family members)
Environment Ontology (ENVO)	Unclassified (71.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (88.571 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1DelMOSum2010_1000131523 2DelMOSum2010_100297847 3LPjun09P1210mDRAFT_10009744 4OpTDRAFT_100497155 5JGI24003J15210_100130237 6JGI24005J15628_100770482 7Ga0065861_11134933 8Ga0065861_11974223 9Ga0066613_14065303 10Ga0066830_100000844 11Ga0070722_100759913 12Ga0078893_129278433 13Ga0070742_100090233 14Ga0075502_14619541 15Ga0075503_15927651 16Ga0070744_100731301 17Ga0070754_101589203 18Ga0075477_102183621 19Ga0070747_11423403 20Ga0115371_107729162 21Ga0115371_112549772 22Ga0115371_113638262 23Ga0102854_10110327 24Ga0102830_12619041 25Ga0102814_102560864 26Ga0114995_100011791 27Ga0114998_100109105 28Ga0115547_12279823 29Ga0114915_10113697 30Ga0114915_11823461 31Ga0115545_10928603 32Ga0115556_12441322 33Ga0115557_10842251 34Ga0115571_100162213 35Ga0115570_100577975 36Ga0115003_100595335 37Ga0115000_100035011 38Ga0133547_112386002 39Ga0164321_102228813 40Ga0180120_103164864 41Ga0181377_10491033 42Ga0181387_10166322 43Ga0181412_10757771 44Ga0181390_10360682 45Ga0181390_10913194 46Ga0181420_11686911 47Ga0181430_11963833 48Ga0181380_12463021 49Ga0181424_103979011 50Ga0181552_1000217511 51Ga0181607_100377603 52Ga0181600_103578821 53Ga0206125_100060574 54Ga0206129_100099173 55Ga0206131_1000518821 56Ga0181597_100345579 57Ga0211504_10027623 58Ga0211504_10083011 59Ga0211504_10767751 60Ga0211554_100043555 61Ga0211576_1000140013 62Ga0211576_100054592 63Ga0211576_100247561 64Ga0211576_101095183 65Ga0211577_103613363 66Ga0206677_1000335818 67Ga0213860_100656964 68Ga0213863_102311282 69Ga0213869_100406862 70Ga0255779_12973762 71Ga0255753_13075121 72Ga0233433_103506831 73Ga0244775_100745734 74Ga0244776_100209916 75Ga0209986_100505736 76Ga0209535_10204777 77Ga0209634_10106012 78Ga0209634_10161782 79Ga0209634_10724871 80Ga0209645_100000491 81Ga0209337_13019701 82Ga0208814_100263314 83Ga0208814_10034533 84Ga0208814_10161502 85Ga0209716_11134411 86Ga0208134_10937691 87Ga0208428_10559872 88Ga0209602_10120315 89Ga0209714_11446242 90Ga0208645_10931152 91Ga0208645_12845383 92Ga0209309_100780561 93Ga0209502_1000744612 94Ga0209502_100150193 95Ga0209711_100032651 96Ga0209830_1000097922 97Ga0209090_100209379 98Ga0209272_102457564 99Ga0228674_10095811 100Ga0257110_13192621 101Ga0247572_11591281 102Ga0307488_100644908 103Ga0302119_1000451812 104Ga0302120_100554144 105Ga0315321_100246711
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1DelMOSum2010_1000131523 2LPjun09P1210mDRAFT_10009744 3JGI24005J15628_100770482 4Ga0065861_11134933 5Ga0070742_100090233 6Ga0102814_102560864 7Ga0114995_100011791 8Ga0114915_11823461 9Ga0115557_10842251 10Ga0181387_10166322 11Ga0181420_11686911 12Ga0181607_100377603 13Ga0255753_13075121 14Ga0233433_103506831 15Ga0247572_11591281 16Ga0302119_1000451812 17Ga0315321_100246711
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1DelMOSum2010_1000131523 2LPjun09P1210mDRAFT_10009744 3JGI24005J15628_100770482 4Ga0065861_11134933 5Ga0065861_11974223 6Ga0115371_107729162 7Ga0115371_112549772 8Ga0115371_113638262 9Ga0102814_102560864 10Ga0114915_10113697 11Ga0133547_112386002 12Ga0181377_10491033 13Ga0181380_12463021 14Ga0181600_103578821 15Ga0206129_100099173 16Ga0211504_10027623 17Ga0211576_100247561 18Ga0206677_1000335818 19Ga0213860_100656964 20Ga0233433_103506831 21Ga0209634_10106012 22Ga0209634_10724871 23Ga0209502_100150193 24Ga0302119_1000451812
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.34% β-sheet: 0.00% Coil/Unstructured: 43.66%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13673	Acetyltransf_10	12.38
PF00082	Peptidase_S8	7.62
PF09694	Gcw_chp	6.67
PF00127	Copper-bind	5.71
PF06035	Peptidase_C93	4.76
PF11953	DUF3470	3.81
PF05488	PAAR_motif	1.90
PF01764	Lipase_3	1.90
PF00970	FAD_binding_6	1.90
PF00578	AhpC-TSA	1.90

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	4.76
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	1.90
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.95
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	0.95
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	19.05 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	19.05 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.05 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.43 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	3.81 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	3.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.90 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.95 %
Unclassified	root	N/A	80.95 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.90 %
Unclassified	root	N/A	80.95 %
unclassified Bdellovibrionales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales	1.90 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	1.90 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	1.90 %
Unclassified	root	N/A	80.95 %
Woeseia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia	0.95 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	1.90 %
Polynucleobacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus	1.90 %
Unclassified	root	N/A	80.95 %
unclassified Woeseia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → unclassified Woeseia	0.95 %

Name	Rank	Taxonomy	Distribution
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29	1.90 %
Polynucleobacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus	1.90 %
Unclassified	root	N/A	80.95 %
Woeseia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → unclassified Woeseia → Woeseia sp.	0.95 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022931\|Ga0233433_10350683	Not Available	592	Open in IMG/M
3300000101\|DelMOSum2010_c10001315	Not Available	20121	Open in IMG/M
3300000101\|DelMOSum2010_c10029784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus	3020	Open in IMG/M
3300000168\|LPjun09P1210mDRAFT_c1000974	Not Available	3281	Open in IMG/M
3300000928\|OpTDRAFT_10049715	Not Available	3910	Open in IMG/M
3300001460\|JGI24003J15210_10013023	Not Available	3307	Open in IMG/M
3300001589\|JGI24005J15628_10077048	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300004448\|Ga0065861_1197422	Not Available	1116	Open in IMG/M
3300005234\|Ga0066613_1406530	Not Available	675	Open in IMG/M
3300005433\|Ga0066830_10000084	All Organisms → cellular organisms → Bacteria	12832	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.14%
Sediment	Environmental → Aquatic → Sediment	2.86%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	20.00%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.95%
Inlet	Environmental → Aquatic → Marine → Inlet	0.95%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.43%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	29.52%
Pelagic	Environmental → Aquatic → Marine → Pelagic	12.38%
Strait	Environmental → Aquatic → Marine → Strait	7.62%
Unclassified	Environmental → Aquatic → Marine → Unclassified	11.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.86%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.81%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.95%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.71%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.90%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.95%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.95%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	27.62%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	18.10%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	12.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	11.43%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	8.57%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	4.76%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.95%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.81%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.86%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.95%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.95%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	21.90%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.57%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.90%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.90%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.95%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.95%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.90%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.95%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.95%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	9.52%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.95%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	5.71%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.62%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.76%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.86%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.90%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.95%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	2.86%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000168	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10m	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300005234	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_100m_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental	Open in IMG/M
3300005601	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_1000131523	3300000101	Marine	MNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
DelMOSum2010_100297847	3300000101	Marine	MNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
LPjun09P1210mDRAFT_10009744	3300000168	Marine	MGSDVEMRAVALTIIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF*
OpTDRAFT_100497155	3300000928	Freshwater And Marine	MNTIKLVIDKSGIFKKVDQKMEALCYAMLWGSMFLCMSQLAYM*
JGI24003J15210_100130237	3300001460	Marine	MNTIKLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL*
JGI24005J15628_100770482	3300001589	Marine	MKAVALTIIDKSGITKKVTEKVETLCYAMLWGSWFICLAQIF*
Ga0065861_11134933	3300004448	Marine	MTIIAKIVDKTGIFKKLDQKAETFCYALLWSSMFICLAQMF*
Ga0065861_11974223	3300004448	Marine	MNTIKLVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0066613_14065303	3300005234	Marine	MNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0066830_100000844	3300005433	Marine	MNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM*
Ga0070722_100759913	3300005601	Marine Sediment	MNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0078893_129278433	3300005837	Marine Surface Water	MNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM*
Ga0070742_100090233	3300005942	Estuarine	MNTIRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0075502_14619541	3300006357	Aqueous	MNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLTYM*
Ga0075503_15927651	3300006400	Aqueous	MNTIRLVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM*
Ga0070744_100731301	3300006484	Estuarine	MKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF*
Ga0070754_101589203	3300006810	Aqueous	MNTIKVVIDKTGIFKKVDQKLEALCYAMLWGSMFLCMSQLTYM*
Ga0075477_102183621	3300006869	Aqueous	MNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM*
Ga0070747_11423403	3300007276	Aqueous	MNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMS
Ga0115371_107729162	3300008470	Sediment	MNTIKLVINKSGIFKKIDQKMEALCYFMLWGLMFLCLAQVAYI*
Ga0115371_112549772	3300008470	Sediment	MNTIKIVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM*
Ga0115371_113638262	3300008470	Sediment	MNTIKLVIDKTGIFKKVDQKLEALCYAMLWGLMFICMAQIFYM*
Ga0102854_10110327	3300009058	Estuarine	NTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0102830_12619041	3300009059	Estuarine	THTYGEHMNTIRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0102814_102560864	3300009079	Estuarine	VTLVYKFIDKSGVFKKTGDKLEALCYALLWGSWFLCLSVLFG
Ga0114995_100011791	3300009172	Marine	KSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0114998_100109105	3300009422	Marine	MNTIKLVVDKSGIFKKGTQKIEFLCYAMFWGAWILCLAQL*
Ga0115547_12279823	3300009426	Pelagic Marine	MNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0114915_10113697	3300009428	Deep Ocean	MNTIKLVIDKSGIFKKVDQKLEALCYFMLWGSMFICMAQIAYI*
Ga0114915_11823461	3300009428	Deep Ocean	TQITYRRIMNTIKLVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM*
Ga0115545_10928603	3300009433	Pelagic Marine	MNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM*
Ga0115556_12441322	3300009437	Pelagic Marine	MNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFLCMSQLAYM*
Ga0115557_10842251	3300009443	Pelagic Marine	MNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFL
Ga0115571_100162213	3300009495	Pelagic Marine	MNTVRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0115570_100577975	3300009496	Pelagic Marine	IMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0115003_100595335	3300009512	Marine	MIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIA
Ga0115000_100035011	3300009705	Marine	MIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0133547_112386002	3300010883	Marine	MIRTIIDKSGIFKKVDRKAETFCYALLWGSMFVCMAQIAYM*
Ga0164321_102228813	3300014903	Marine Sediment	MNTIKLVIDKSGIFKKVDQKIEALCYAMLWGSMFVCMSQLAYM*
Ga0180120_103164864	3300017697	Freshwater To Marine Saline Gradient	KLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181377_10491033	3300017706	Marine	MGSDVEMRTIALTIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTALF
Ga0181387_10166322	3300017709	Seawater	MTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLC
Ga0181412_10757771	3300017714	Seawater	ALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181390_10360682	3300017719	Seawater	MGSDVEMRAVALTIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181390_10913194	3300017719	Seawater	VTLVYKFIDKSGIFKKTGDKLEALCYALLWGSWFLCLS
Ga0181420_11686911	3300017757	Seawater	IKRYTRTTRTHRSIMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181430_11963833	3300017772	Seawater	VIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181380_12463021	3300017782	Seawater	MNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCM
Ga0181424_103979011	3300017786	Seawater	EMTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181552_1000217511	3300017824	Salt Marsh	MNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM
Ga0181607_100377603	3300017950	Salt Marsh	MRTVALKIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0181600_103578821	3300018036	Salt Marsh	RMRTVALKIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0206125_100060574	3300020165	Seawater	MNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0206129_100099173	3300020182	Seawater	MNTVRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL
Ga0206131_1000518821	3300020185	Seawater	MNTIKVVIDKTGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0181597_100345579	3300020194	Salt Marsh	RTVALRIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0211504_10027623	3300020347	Marine	MNTIKLVIDKSGIFKKIDQKVEALCYALLWSSMFVCMAQIAYI
Ga0211504_10083011	3300020347	Marine	MNTIKLVVDKSGILKKVDHKVEILCYAMLWGAWFLCLAQL
Ga0211504_10767751	3300020347	Marine	MGSDVEMRTIALTIIDKSGIFKKVNQKAEVLCYAMLWGSWFLCLTALF
Ga0211554_100043555	3300020431	Marine	MNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0211576_1000140013	3300020438	Marine	MNTIKLVIDKSGIFKKVDQKMEALCYAMLWGSMFLCMSQLAYM
Ga0211576_100054592	3300020438	Marine	MNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0211576_100247561	3300020438	Marine	MKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF
Ga0211576_101095183	3300020438	Marine	MGSDVEMRAVALTIIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF
Ga0211577_103613363	3300020469	Marine	RIEKEMKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF
Ga0206677_1000335818	3300021085	Seawater	MTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0213860_100656964	3300021368	Seawater	IKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM
Ga0213863_102311282	3300021371	Seawater	MNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCM
Ga0213869_100406862	3300021375	Seawater	MGSDVEMRTIALTIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTTLF
Ga0255779_12973762	3300022922	Salt Marsh	MNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAY
Ga0255753_13075121	3300022926	Salt Marsh	TSNKRFTTLQTYRSIMNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM
(restricted) Ga0233433_103506831	3300022931	Seawater	VTLVYKFIDKSGIFKKVHEKAEVLCYTMLWGSWFLCLS
Ga0244775_100745734	3300024346	Estuarine	MNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0244776_100209916	3300024348	Estuarine	MNTIKLVIDKSGIFKKVDRKMEALCYAMLWGSMFLCMSQLAYM
Ga0209986_100505736	3300024433	Deep Subsurface	RTHRSIMNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0209535_10204777	3300025120	Marine	MNTIKLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL
Ga0209634_10106012	3300025138	Marine	MNRMSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTQLL
Ga0209634_10161782	3300025138	Marine	MKAVALTIIDKSGITKKVTEKVETLCYAMLWGSWFICLAQIF
Ga0209634_10724871	3300025138	Marine	KLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL
Ga0209645_100000491	3300025151	Marine	MNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM
Ga0209337_13019701	3300025168	Marine	MNRMSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTQLF
Ga0208814_100263314	3300025276	Deep Ocean	MNTIKLVINKSGIFKKIDQKMEALCYFMLWGLMFLCLAQVAYI
Ga0208814_10034533	3300025276	Deep Ocean	MNTIKLVIDKSGIFKKVDQKLEALCYFMLWGSMFICMAQIAYI
Ga0208814_10161502	3300025276	Deep Ocean	MNTIKIVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM
Ga0209716_11134411	3300025626	Pelagic Marine	QTYRGIMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0208134_10937691	3300025652	Aqueous	RYITLQTDRRIMNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0208428_10559872	3300025653	Aqueous	MNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQL
Ga0209602_10120315	3300025704	Pelagic Marine	MNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0209714_11446242	3300025822	Pelagic Marine	MNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFLCMSQLAYM
Ga0208645_10931152	3300025853	Aqueous	MNTIRLVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM
Ga0208645_12845383	3300025853	Aqueous	LVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM
Ga0209309_100780561	3300025881	Pelagic Marine	SIMNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0209502_1000744612	3300027780	Marine	MNTIKLVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209502_100150193	3300027780	Marine	MNTIKLVVDKSGIFKKGTQKIEFLCYAMFWGAWILCLAQL
Ga0209711_100032651	3300027788	Marine	MIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAY
Ga0209830_1000097922	3300027791	Marine	MIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209090_100209379	3300027813	Marine	MNTIKIVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209272_102457564	3300027967	Marine Sediment	NKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0228674_10095811	3300028008	Seawater	HRSIMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0257110_13192621	3300028197	Marine	MSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCL
Ga0247572_11591281	3300028290	Seawater	RITTLQRDRNIMNTIKLVIDKSGIFKKIDQKVEALCYALLWSSMFVCMAQIAYI
Ga0307488_100644908	3300031519	Sackhole Brine	MTIIAKIVDKTGIFKKLDQKAETFCYALLWSSMFICLAQMF
Ga0302119_1000451812	3300031606	Marine	MDTIKLVIDKSGICKKVDQKVETLAYTLIWSSIIICMAQIAYI
Ga0302120_100554144	3300031701	Marine	MDTIKLVIDKSGICKKVDQKVETLAYTLIWSSIII
Ga0315321_100246711	3300032088	Seawater	IIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters