NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095530

Metagenome / Metatranscriptome Family F095530

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095530
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 43 residues
Representative Sequence MSTCDITSGFTLGCRDNTGGIANIYILSGSIDSVTDASEGLIQTI
Number of Associated Samples 88
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Viruses
% of genes with valid RBS motifs 24.10 %
% of genes near scaffold ends (potentially truncated) 78.10 %
% of genes from short scaffolds (< 2000 bps) 69.52 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group unclassified viruses (65.714 % of family members)
NCBI Taxonomy ID 12429
Taxonomy All Organisms → Viruses → unclassified viruses

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(31.429 % of family members)
Environment Ontology (ENVO) Unclassified
(41.905 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(64.762 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1DelMOSum2011_100214811
2DelMOSpr2010_102004141
3BBAY94_100080561
4BBAY88_10400472
5RCM30_10538811
6Ga0066177_104680841
7Ga0066612_13001702
8Ga0007759_115121972
9Ga0074647_10478281
10Ga0075483_12708072
11Ga0075510_109645531
12Ga0075486_10081382
13Ga0070749_100733904
14Ga0070749_101638413
15Ga0070749_102346631
16Ga0070754_102366952
17Ga0070754_104133722
18Ga0075463_100872142
19Ga0070745_11431441
20Ga0070753_10594193
21Ga0070753_10887881
22Ga0070753_12097581
23Ga0099851_11028191
24Ga0099851_12586221
25Ga0099846_12412442
26Ga0099846_12849761
27Ga0102963_13312181
28Ga0118687_101819932
29Ga0115545_10793413
30Ga0118731_1085166932
31Ga0114922_111605961
32Ga0129326_14484501
33Ga0129331_14884331
34Ga0157498_10527591
35Ga0129340_11074642
36Ga0172367_101915331
37Ga0172365_100850534
38Ga0172365_105162192
39Ga0117790_10707182
40Ga0172376_102670451
41Ga0182085_10746042
42Ga0182085_11439471
43Ga0182045_14076311
44Ga0182094_13376171
45Ga0182057_14281813
46Ga0182092_10740322
47Ga0182095_11699831
48Ga0181391_10756281
49Ga0181347_11002992
50Ga0181419_10816052
51Ga0181399_10288471
52Ga0181346_12619322
53Ga0181607_100728744
54Ga0181564_107260952
55Ga0182077_16246032
56Ga0182058_12206911
57Ga0181562_105259141
58Ga0181359_11362172
59Ga0182044_14409421
60Ga0206131_100289791
61Ga0206131_101521313
62Ga0206131_101879191
63Ga0181604_104235162
64Ga0181598_13187912
65Ga0194123_102802581
66Ga0222718_103208862
67Ga0222714_105742971
68Ga0222713_102740751
69Ga0196883_10340421
70Ga0212024_10148473
71Ga0212024_10228872
72Ga0212021_10950551
73Ga0196885_1038192
74Ga0196897_10317651
75Ga0212027_10117571
76Ga0224504_102538932
77Ga0222673_10087624
78Ga0214923_103082741
79Ga0208793_10861991
80Ga0208303_10815021
81Ga0208643_11299411
82Ga0209653_11977592
83Ga0209137_11653441
84Ga0208767_11106052
85Ga0208767_11490482
86Ga0208645_10550541
87Ga0208645_12128242
88Ga0209929_10542812
89Ga0209929_11356492
90Ga0247600_11088921
91Ga0209536_1029159131
92Ga0256368_10735331
93Ga0228648_10880192
94Ga0247844_10503691
95Ga0135227_10344141
96Ga0307380_101016404
97Ga0307379_103798451
98Ga0307376_100287241
99Ga0307375_102816911
100Ga0307377_101490971
101Ga0307377_101513551
102Ga0307377_106199401
103Ga0335028_0638097_431_565
104Ga0335027_0040352_3_155
105Ga0335048_0075228_1_105
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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Variant

51015202530354045MSTCDITSGFTLGCRDNTGGIANIYILSGSIDSVTDASEGLIQTISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
79.0%21.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater Lake
Freshwater
Freshwater Lake
Freshwater, Surface Ice
Sediment
Marine Plankton
Marine
Marine Sediment
Deep Subsurface
Marine
Aqueous
Seawater
Sea-Ice Brine
Marine
Salt Marsh
Estuarine Water
Pelagic Marine
Seawater
Marine
Seawater
Sediment
Marine Harbor
Saline Water
Pond Water
Saline Water And Sediment
Sediment
Soil
Macroalgal Surface
Epidermal Mucus
4.8%6.7%31.4%14.3%2.9%2.9%2.9%2.9%6.7%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1002148113300000115MarineMACDISSGFSLACRDNSGGIKNIYILSGSVSTVTEASEGLIS
DelMOSpr2010_1020041413300000116MarineMSTCDITSGFTLGCRDNTGGIRNIYILSGSVDSVTGSGATGL
BBAY94_1000805613300000949Macroalgal SurfaceMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDTITDASEGLIN
BBAY88_104004723300001183Macroalgal SurfaceMACDISSGFSLACRDNSGGIKNIYILSGSTPVISESSEGLISDL
RCM30_105388113300001842Marine PlanktonMACSITAGFQLGCRNNTGGIKNIYILSGSISSISGSQGL
Ga0066177_1046808413300004096Freshwater LakeMACEISSGFTLGCRDNTGGIKNIYILSGSITATNGTEGLITSI
Ga0066612_130017023300004642MarineMSTCDITSGFTLGCRDNTGGIKNLYILSGSISSVADASEGLINGITGSG
Ga0007759_1151219723300004836Freshwater LakeMPCAITSGFQLGCRDNTGGIKNIYILSGSISNITGSQGLITSIS
Ga0074647_104782813300005611Saline Water And SedimentMATCDITSGFTLGCRDNTGGIRKLYILSGSISSVSGSTGYIESI
Ga0075483_127080723300006373AqueousMSCQITSGRSIPCRQSLGGIKNIYILSGSVAGTTAA
Ga0075510_1096455313300006405AqueousMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDTIVDASEGLISEMTGS
Ga0075486_100813823300006425AqueousMSCQITSGRSIPCRQSLGGIKNIYILSGSVAGVTAASG
Ga0070749_1007339043300006802AqueousMSTCDITSGFTLGCRDNTGGIANIYILSGSIDSVTD
Ga0070749_1016384133300006802AqueousMSCQITSGRSILCRQSLGGIKNIYILSGSVAGVTAASGAIS
Ga0070749_1023466313300006802AqueousMSTCDITSGFTLGCRDNTGGIANIYILSGSIDSVTDASEGLIQTI
Ga0070754_1023669523300006810AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSITSVAD
Ga0070754_1041337223300006810AqueousMSTCDITSGFTLGCRDNTGGIKNVYILSGSVDSVTGS
Ga0075463_1008721423300007236AqueousMSSCDITSGFTLGCRDNTGGLKNIYILSGSISSTSGTTGLLSAV
Ga0070745_114314413300007344AqueousMSTCDITSGFTLGCRDNTGGIRNLYILSGSVAGLTG
Ga0070753_105941933300007346AqueousMACDITSGFTLGCRDNSGGIKNIYILSGSVAGITEASEGLISDISG
Ga0070753_108878813300007346AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSITTVAD
Ga0070753_120975813300007346AqueousSGFTLGCRDNSGGIKNIYILSGSVAGITEASEGLISDISG*
Ga0099851_110281913300007538AqueousMSTCDITSGFTLGCRDNTGGLKNIYILSGSISSTSGTTGLLSQISGSG
Ga0099851_125862213300007538AqueousMATCDITSGFTLGCRDNSGGIKNIYILSGSITSIDEVSDGLISAISGSGTFF
Ga0099846_124124423300007542AqueousMACDITSGFTLGCRDNVGSIKQIYILSGSVTSVVDASEGLI
Ga0099846_128497613300007542AqueousMSSCDITSGFTLGCRDNTGGLKNIYILSGSISSTS
Ga0102963_133121813300009001Pond WaterMSTCDITSGFTLGCRDNSGGIKNLYILSGSITSVGDASEGLINSISGSG
Ga0118687_1018199323300009124SedimentMSCDITSGFTLGCRDNTGGLKNIYILSGSISSTGGATGLLDAISG
Ga0115545_107934133300009433Pelagic MarineMSTYDITSGFTLGCRDNTGGIANLYILSGSITSVTDA
Ga0118731_10851669323300010392MarineMACDITSGFTLGCRDNSGGIKNVYILSGSISTVNEVSDGLISGIT
Ga0114922_1116059613300011118Deep SubsurfaceMSCDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGL
Ga0129326_144845013300012522AqueousMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDSVTGSGDVGLITAISGS
Ga0129331_148843313300012524AqueousMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDSVTGSGDVGLITAISGSGTF
Ga0157498_105275913300012666Freshwater, Surface IceMPTPCQITSGFTLGCRDNVGSIKNIYILSGSITAVN
Ga0129340_110746423300012963AqueousMATCDITSGFTLGCRDNTGGLKNIYILSGSVDSVTGSGATGLITAIS
(restricted) Ga0172367_1019153313300013126FreshwaterMSCDITSGFQLGCRDNTGGLKAIYILSGSITSISGSQGLITAISGSG
(restricted) Ga0172365_1008505343300013127SedimentMACSITSGFQLGCRDNTGGIKNIYILSGSISSISGSQGLITAISGS
(restricted) Ga0172365_1051621923300013127SedimentMSCDITSGFQLGCRDNTGGLKALYILSGSITTINTAADGT
Ga0117790_107071823300014042Epidermal MucusMACDITSGFQLGCRDNTGGLKAIYILSGSIETIDGTQGLIT
(restricted) Ga0172376_1026704513300014720FreshwaterMPAPCQITSGYTLGCRDNIGSIKNIFILSGSVTAVVAPTEGLITQ
Ga0182085_107460423300016723Salt MarshMSTCDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGLLNELSGSGTF
Ga0182085_114394713300016723Salt MarshMACDVTAGFQLGCRDNSGGIKSVYILSGSVTTVTESSGEITDISG
Ga0182045_140763113300016726Salt MarshMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDSVVGS
Ga0182094_133761713300016731Salt MarshMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDTITDASEGLINAISGSGTF
Ga0182057_142818133300016732Salt MarshMSTCDITSGFSLGCRDNSGGIKNLFILSGSISAVADESEGLINSISGS
Ga0182092_107403223300016734Salt MarshMACDVTAGFQLGCRDNSGGIKSVYILSGSITTITESSDEITDI
Ga0182095_116998313300016791Salt MarshMSTCDISSGFTLGCRDNSGGIKNIYILSGSIDTITDAS
Ga0181391_107562813300017713SeawaterMACDITSGFQLGCRDNMGGLRQIYILSGSVVSVTGATNGLITDISG
Ga0181347_110029923300017722Freshwater LakeMPCAITSGFQLGCRDNTGGIKNIYILSGSISSISGSQGL
Ga0181419_108160523300017728SeawaterMACDITSGFQLGCRDNSGGISNIYILSGSVTSVTEASGEITDLSGDGV
Ga0181399_102884713300017742SeawaterMACDITSGFTLGCRDNSGGIKNIYILSGSIDTVTGYENGYITD
Ga0181346_126193223300017780Freshwater LakeMPCAITSGFQLGCRDNTGGIKNIYILSGSISSISGSQGLI
Ga0181607_1007287443300017950Salt MarshMSTCDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGLL
Ga0181564_1072609523300018876Salt MarshMACDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGT
Ga0182077_162460323300019281Salt MarshMACEITSGFTLECRDNAGGIKNIYILSGSIAGTTGETNGLLTDISG
Ga0182058_122069113300019283Salt MarshMSTCDITSGFSLGCRDNSGGIKNLFILSGSISAVADESEG
Ga0181562_1052591413300019459Salt MarshMACDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGLID
Ga0181359_113621723300019784Freshwater LakeMPCAITSGFQLGCRDNTGGIKNIYILSGSISSISGSQGLITSISG
Ga0182044_144094213300020014Salt MarshMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDTVTDESTGLIGALSGSGT
Ga0206131_1002897913300020185SeawaterMSCDITSGFTLGCRDNTGGIANLYILSGSIDSVVDASEGLIET
Ga0206131_1015213133300020185SeawaterMSTCDITSGFTLGCRDNTGGIANLYILSGSIDSVVDASEGLIET
Ga0206131_1018791913300020185SeawaterMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDTIVDASEG
Ga0181604_1042351623300020191Salt MarshMSTCDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGLLN
Ga0181598_131879123300020810Salt MarshMSTCDITSGFTLGCRDNTGGLKNIYILSGSIDSTSGTTGL
Ga0194123_1028025813300021093Freshwater LakeMSCDITSGFTLGCRDNVGSIKQIYILSGSVTNVVDASEGLINAITGSG
Ga0222718_1032088623300021958Estuarine WaterMATCDITSGFTLGCRDNTGGIRKLYILSGSISSVSGSTGYIESISGSGD
Ga0222714_1057429713300021961Estuarine WaterMSTCDITSGFTLGCRDNSGGIKNIYILSGSITTISEVSDGLIGGI
Ga0222713_1027407513300021962Estuarine WaterMACDITSGLTLGCRDNVGSIKQIYILSGSVSNVTDASEGLINSITGSGVF
Ga0196883_103404213300022050AqueousMSTCDITSGFTLGCRDNTGGIANIYILSGSIDSVTDASEK
Ga0212024_101484733300022065AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSITSVTDASEGLSFFFSFP
Ga0212024_102288723300022065AqueousMSTCDITSGFTLGCRDNTGGIRNIYILSGSVDSVTGSGASYP
Ga0212021_109505513300022068AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSITSVVDASEGL
Ga0196885_10381923300022140AqueousMSCQITSGRSIPCRQSLGGIKNIYILSGSVAGTTAASGAISDISGSK
Ga0196897_103176513300022158AqueousMSTCDIASGFTLGCRDNTGGLKNIYILSGSISSTSGTTGLLSQVSSSG
Ga0212027_101175713300022168AqueousMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDSVTGSGTTGLISAMSG
Ga0224504_1025389323300022308SedimentMACDISSGFQLGCRDNSGGIQNVYILSGSVTSVTDSSGEISTIS
Ga0222673_100876243300022821Saline WaterMSCNITKGFELGCRDNTGGIKRAYILGGSITSVTVADVATAPF
Ga0214923_1030827413300023179FreshwaterMPSPCQITSGTTLGCRDNVGSIKNIWILSGSITNIVETSEGLITQITGSAGSQFWK
Ga0208793_108619913300025108MarineMSCDITSGFELGCRDNSGGIKNLYILGASGSVAGTIESVTDASE
Ga0208303_108150213300025543AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSIDSVTDA
Ga0208643_112994113300025645AqueousMSTCDIIAGFTLGCRDNVGGITNLYILSGSITTVN
Ga0209653_119775923300025695MarineMACDITSGFELGCRDNAGGIKNLYILSGSIDTITGADSGLISDV
Ga0209137_116534413300025767MarineMSCDITSGFTLGCRDNTGGLKNIYILSGSVDSTSGTTGLL
Ga0208767_111060523300025769AqueousMSTCDITSGFTLGCRDNTGGIKNLYILSGSIDTVTDASEGVISGITGSGG
Ga0208767_114904823300025769AqueousMSCQITSGRSIPCRQSLGGIKNIYILSGSVAGVTAASGAIS
Ga0208645_105505413300025853AqueousMSTCDITSGFTLGCRDNTGGIANLYILSGSITSVADASEGLISGITGSGEF
Ga0208645_121282423300025853AqueousMACDITSGFTLGCRDNSGGIKNIYILSGSIAGITEASEGLISDISGSG
Ga0209929_105428123300026187Pond WaterMSTCDITSGFTLGCRDNTGGIKNIYILSGSVDSVTGSGADGLI
Ga0209929_113564923300026187Pond WaterMATCDITSGFTLGCRDNTGGITNLYILSGSIDTVTTASEGLIDAI
Ga0247600_110889213300026461SeawaterMSTCDITSGFSLGCRDNTGGIANLYILSGSIDSVVDASEGLIETISG
Ga0209536_10291591313300027917Marine SedimentMSTCDITSGFTLGCRDNTGGIKNVYILSGSVDTVTGSGSTGLISAISGS
Ga0256368_107353313300028125Sea-Ice BrineMSTCDITSGFTLGCRDNVGGITNLYILSGSITTVTDVSDG
Ga0228648_108801923300028126SeawaterMACNISSGFTLACRDNSGGIKNIYILSGSVSSVVEASEGL
(restricted) Ga0247844_105036913300028571FreshwaterMSCQITSGFTLGCRDNTGGIKSVYILSGSVTSVTDASEGLINAITA
Ga0135227_103441413300029302Marine HarborMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDTITDASETTND
Ga0307380_1010164043300031539SoilMSSCDITSGFTLGCRDNTGGLKNIYILSGSISSTSGTTGLLSAISGSGT
Ga0307379_1037984513300031565SoilMSTCDITSGFTLGCRDNTGGIANLYILSGSITSVTDASEGLISGITGSGEF
Ga0307376_1002872413300031578SoilMSTCDITSGFTLGCRDNTGGIKNLYILSGSIDTIDTASEGLINGITGSGV
Ga0307375_1028169113300031669SoilMATCDITSGFTLSCRDNSGGIRNLYILSGSVSSITNASEGLINAMTGSG
Ga0307377_1014909713300031673SoilMACDITSGFALGCRDNTGGITNLYILSGSITTVNTVSEGLING
Ga0307377_1015135513300031673SoilMSTCDITSGFTLGCRDNSGGIKNLYILSGSIDTLGTASEGLINAM
Ga0307377_1061994013300031673SoilMSTCDITSGFTLGCRDNSGGIKNLYILSGSVDSIATA
Ga0335028_0638097_431_5653300034071FreshwaterMSTTCDIVSGFTLGCRDNTGGLKNIYILSGSISSTGGTEGLISTI
Ga0335027_0040352_3_1553300034101FreshwaterMPAGCDITSGFALGCRDNTGGIRNIYILSGSISNITYQSSAQGLITGISGS
Ga0335048_0075228_1_1053300034356FreshwaterMACDITSGFQLGCRDNTGGLKSIYILSGSITSVSG


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