Metagenome Family F095275

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095275
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	43 residues
Representative Sequence	LDLTDAERAAFVARDMRRINELGGYLHLVMSVPGLAAH
Number of Associated Samples	100
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (88.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (26.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.857 % of family members)

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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0055465_103125021 2Ga0062590_1022997691 3Ga0063356_1059889632 4Ga0066680_105368441 5Ga0066685_110838051 6Ga0066388_1017807062 7Ga0070689_1014680611 8Ga0070669_1018232161 9Ga0070694_1004085233 10Ga0066686_106735922 11Ga0066686_111112191 12Ga0066687_103935462 13Ga0070707_1010016391 14Ga0070684_1009945361 15Ga0066697_100355564 16Ga0066697_100985664 17Ga0066695_106599271 18Ga0066692_102989522 19Ga0066698_101827544 20Ga0066703_104451191 21Ga0066654_108880381 22Ga0068859_1025294952 23Ga0066653_101531581 24Ga0075431_1015127741 25Ga0075424_1007113273 26Ga0075436_1015146222 27Ga0099794_106460331 28Ga0066710_1017412601 29Ga0114129_101782353 30Ga0114129_132855741 31Ga0111538_133910251 32Ga0075423_126768232 33Ga0114945_105345402 34Ga0105238_113410712 35Ga0126374_108839741 36Ga0105087_10746512 37Ga0105064_10377081 38Ga0126384_101417654 39Ga0126382_115160732 40Ga0134111_104617892 41Ga0126370_103362851 42Ga0126370_107063373 43Ga0126372_100857634 44Ga0126372_112207092 45Ga0137391_109306561 46Ga0137456_11257092 47Ga0137338_11310722 48Ga0137388_113642392 49Ga0137383_101404931 50Ga0137363_117306931 51Ga0137399_102662761 52Ga0137379_114136171 53Ga0137371_112021131 54Ga0157290_100835122 55Ga0137396_113003432 56Ga0137394_1000434414 57Ga0137416_100994021 58Ga0137404_110631102 59Ga0153916_131738011 60Ga0134110_101417861 61Ga0137409_114098081 62Ga0137403_110509232 63Ga0134085_105200821 64Ga0132258_115207171 65Ga0132255_1031330241 66Ga0134112_101021501 67Ga0134083_105726502 68Ga0184608_100956031 69Ga0184634_105205321 70Ga0190272_120563382 71Ga0193723_11533262 72Ga0193730_10103621 73Ga0193755_12015421 74Ga0194131_101043211 75Ga0194120_101512951 76Ga0193695_11135321 77Ga0210073_10193871 78Ga0207647_102978541 79Ga0207709_112352691 80Ga0207668_106729481 81Ga0209055_10115001 82Ga0209152_101256892 83Ga0209802_12626302 84Ga0209803_12545162 85Ga0257173_10079773 86Ga0257171_10399682 87Ga0209690_12091821 88Ga0209157_10384713 89Ga0209156_101346552 90Ga0256865_10901932 91Ga0209726_100969464 92Ga0209481_103525542 93Ga0247828_102708161 94Ga0247818_111588561 95Ga0247820_105222892 96Ga0307504_104197261 97Ga0307312_104133231 98Ga0299907_104283211 99Ga0310888_108038481 100Ga0307469_106867641 101Ga0307473_115522222 102Ga0214473_107280543 103Ga0335079_117119232 104Ga0335083_104892321 105Ga0316628_1037190721
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0055465_103125021 2Ga0063356_1059889632 3Ga0070689_1014680611 4Ga0066686_111112191 5Ga0066697_100985664 6Ga0066698_101827544 7Ga0066703_104451191 8Ga0066653_101531581 9Ga0075424_1007113273 10Ga0114129_101782353 11Ga0075423_126768232 12Ga0114945_105345402 13Ga0126384_101417654 14Ga0126372_112207092 15Ga0153916_131738011 16Ga0132255_1031330241 17Ga0207709_112352691 18Ga0207668_106729481 19Ga0214473_107280543
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38 1Ga0105087_10746512 2Ga0062590_1022997691 3Ga0063356_1059889632 4Ga0066685_110838051 5Ga0070689_1014680611 6Ga0066686_111112191 7Ga0066697_100355564 8Ga0066703_104451191 9Ga0075423_126768232 10Ga0114945_105345402 11Ga0105238_113410712 12Ga0126370_107063373 13Ga0126372_100857634 14Ga0126372_112207092 15Ga0137379_114136171 16Ga0157290_100835122 17Ga0137396_113003432 18Ga0153916_131738011 19Ga0137409_114098081 20Ga0137403_110509232 21Ga0132255_1031330241 22Ga0134112_101021501 23Ga0194131_101043211 24Ga0207709_112352691 25Ga0207668_106729481 26Ga0299907_104283211 27Ga0316628_1037190721
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.39% β-sheet: 0.00% Coil/Unstructured: 60.61%
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Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01557	FAA_hydrolase	24.76
PF04519	Bactofilin	7.62
PF08530	PepX_C	6.67
PF13401	AAA_22	3.81
PF01979	Amidohydro_1	2.86
PF16901	DAO_C	2.86
PF03061	4HBT	2.86
PF00561	Abhydrolase_1	2.86
PF00480	ROK	1.90
PF02515	CoA_transf_3	1.90

Showing 1 to 10 of 30 entries

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Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	7.62
COG2936	Predicted acyl esterase	General function prediction only [R]	6.67
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	3.81
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	1.90
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.95
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.95
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.95
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.95
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.95
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.95

Showing 1 to 10 of 12 entries

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.57 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.57 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.57 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	48.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.33 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.95 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	48.57 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.95 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	48.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.95 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.95 %
Unclassified	root	N/A	11.43 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.95 %
Spirochaetaceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae	0.95 %
Unclassified	root	N/A	11.43 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	28.57 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	28.57 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.95 %
Unclassified	root	N/A	11.43 %
unclassified Spirochaetaceae	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → unclassified Spirochaetaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	28.57 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.95 %
Spirochaetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → unclassified Spirochaetaceae → Spirochaetaceae bacterium	0.95 %
Unclassified	root	N/A	11.43 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004013\|Ga0055465_10312502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300004157\|Ga0062590_102299769	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	567	Open in IMG/M
3300004463\|Ga0063356_105988963	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	521	Open in IMG/M
3300005174\|Ga0066680_10536844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	735	Open in IMG/M
3300005180\|Ga0066685_11083805	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005332\|Ga0066388_101780706	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1094	Open in IMG/M
3300005340\|Ga0070689_101468061	Not Available	617	Open in IMG/M
3300005353\|Ga0070669_101823216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300005444\|Ga0070694_100408523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1064	Open in IMG/M
3300005446\|Ga0066686_10673592	Not Available	701	Open in IMG/M

Showing 1 to 10 of 105 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.81%
Host-Associated	Host-Associated	16.19%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.48%
Plants	Host-Associated → Plants	16.19%
Terrestrial	Environmental → Terrestrial	73.33%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Marine	Environmental → Aquatic → Marine	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.43%
Sediment	Environmental → Aquatic → Sediment	3.81%
Soil	Environmental → Terrestrial → Soil	73.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Lake	Environmental → Aquatic → Freshwater → Lake	1.90%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Sand	Environmental → Terrestrial → Soil → Sand	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.86%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.95%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.95%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.95%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.33%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055465_103125021	3300004013	Natural And Restored Wetlands	ADAPAALAGLDLSDAERAAFVARDRRKINELGGYLHLVMSVPGLAAH*
Ga0062590_1022997691	3300004157	Soil	ALAGADLSADERAAFVARDMRRINELGGYLHLVMSIPGLAAH*
Ga0063356_1059889632	3300004463	Arabidopsis Thaliana Rhizosphere	AEPQAALADVDLSEEERSAFVARDARRINELGGYLHLVMSVPGIAGH*
Ga0066680_105368441	3300005174	Soil	EADAGTALAGADLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH*
Ga0066685_110838051	3300005180	Soil	TDPEAALAGADLTEAERAAFMARDMRKVNELGGYLHLVMSIPGLAAH*
Ga0066388_1017807062	3300005332	Tropical Forest Soil	ALAGADLSAEERAAFVARDMRRINELGGYLHLVMSIPGLAAH*
Ga0070689_1014680611	3300005340	Switchgrass Rhizosphere	AGADLTESERAAFVARDMRRINELGGYLHLVMSIPGHAAH*
Ga0070669_1018232161	3300005353	Switchgrass Rhizosphere	LAGLDLTEAERAAFVARDTRKINELGGYLHLVMSVPGLAAH*
Ga0070694_1004085233	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AAAVAGADLTESERAAFVARDMRRINELGGYLHLVMSIPGHAAH*
Ga0066686_106735922	3300005446	Soil	PAAVLAGADLSAEERAAFVARDMRRINELGGYLHLVMSIPGLAAH*
Ga0066686_111112191	3300005446	Soil	LDLTDAERAAFLARDMQRINALGGYLHLVMSVPGMAAHVTHPEPE*
Ga0066687_103935462	3300005454	Soil	TADPAAALAGLDLTEPERSAFIARDMRKINELGGYLHLVMSIPGLAAH*
Ga0070707_1010016391	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LADAPSVLAGLDLTEAERAAFIARDMRRINELGGYLHLVMSVPGLAAH*
Ga0070684_1009945361	3300005535	Corn Rhizosphere	DAAAALASVDLTEAERAAFVNHDMRRINELGGYLHLVMSVPGLAAH*
Ga0066697_100355564	3300005540	Soil	LADADLTEAERAAFLARDMRRINELGGYLHLVLSIPGLAVH*
Ga0066697_100985664	3300005540	Soil	AERSAFVARDMRRINELGGYLHLVMSIPGLAASQRATT*
Ga0066695_106599271	3300005553	Soil	NAERSAFVARDMRRINELGGYLHLVMSIPGLAASQRATT*
Ga0066692_102989522	3300005555	Soil	AAFRARDMERINALGGYLHLVMSVPGMAAHVTHTEPE*
Ga0066698_101827544	3300005558	Soil	EPERSAFIARDMRKINELGGYLHLVMSIPGLAAH*
Ga0066703_104451191	3300005568	Soil	MGPAASIGDLDLTDAERAAFVARDLRKVNELGGYLHLVISIPSLAAR*
Ga0066654_108880381	3300005587	Soil	LADADLTEAERAAFLARDMQRINELGGYLHLVLSIPGLAVH*
Ga0068859_1025294952	3300005617	Switchgrass Rhizosphere	SRDAAAAVAGADLTESERAAFVARDMRRINELGGYLHLVMSIPGHAAH*
Ga0066653_101531581	3300006791	Soil	LSADERAAFAARDMRRINELGGYLHLVLSIPGLAVHPPRH*
Ga0075431_1015127741	3300006847	Populus Rhizosphere	RDASAALAGADLSDVERAAFVARDMRAINELGGYLHLVMSIPGLAAH*
Ga0075424_1007113273	3300006904	Populus Rhizosphere	DPAAAIVDLDLTADERAAFVARDMRRINELGGYLHLVLSIPGLAIHPPRR*
Ga0075436_1015146222	3300006914	Populus Rhizosphere	REPNAALADVDLTDDERAAFIARDARRINELGGFLHLVMSVPGIAGH*
Ga0099794_106460331	3300007265	Vadose Zone Soil	DADLTHAERSAFVARDMRRINELGGYLHLVMSIPGLAASQRATT*
Ga0066710_1017412601	3300009012	Grasslands Soil	GRDLTDAERAAFLARDMERINALGGYLHLVMSVPGMAAHVMHAEHE
Ga0114129_101782353	3300009147	Populus Rhizosphere	DLTDDERAAFIARDARRINELGGFLHLVMSVPGIAGH*
Ga0114129_132855741	3300009147	Populus Rhizosphere	ASALAGLDLTEAEQAAFVARDMRRINELGGYLHLVMSVPGLAAH*
Ga0111538_133910251	3300009156	Populus Rhizosphere	ADLTEAEREAFVAHDMRRINELGGYLHLVMSIPGLAAH*
Ga0075423_126768232	3300009162	Populus Rhizosphere	FDLSDAERAAVLARDLHVLNDLGGYLHLLLSIPGFAPH*
Ga0114945_105345402	3300009444	Thermal Springs	ALAGLDLTEDERAAFLARDMRKLNELGGYLHLVMSVPGMAAHVTHADRH*
Ga0105238_113410712	3300009551	Corn Rhizosphere	ASVDLTEAERAAFVNHDMRRINELGGYLHLVMSVPGLAAH*
Ga0126374_108839741	3300009792	Tropical Forest Soil	LTEAERAAFVARDMRRINELGGYLHLVMSIPGLAAH*
Ga0105087_10746512	3300009819	Groundwater Sand	LDLTDAERAAFVARDMRRINELGGYLHLVMSVPGLAAH*
Ga0105064_10377081	3300009821	Groundwater Sand	DLTEAERAAFVAHDMRKINELGGYLHLVMSIPGLAAHGGRA*
Ga0126384_101417654	3300010046	Tropical Forest Soil	VADADLTDAERSAFVARDMRKINELGGYLHLVMSIPGLAAGQHRPT*
Ga0126382_115160732	3300010047	Tropical Forest Soil	DLTEAERAAFMARDMRKINELGGYLHLVMSIPGLAAH*
Ga0134111_104617892	3300010329	Grasslands Soil	AALAGADLTEAERAAFIARDMRKVNELGGYLHLVMSIPGLAAH*
Ga0126370_103362851	3300010358	Tropical Forest Soil	DADLTDAERSAFLARDMRRINELGGYLHLVMSIPGLAAGQHRPT*
Ga0126370_107063373	3300010358	Tropical Forest Soil	ADADLDDAERAAFLTRDMRKINELGGYLHLVMSIPGLAAH*
Ga0126372_100857634	3300010360	Tropical Forest Soil	FGADPAASTADLDLNAEERAAFVARDMRRINELGGYLHLVLSIPGLAVHAPRG*
Ga0126372_112207092	3300010360	Tropical Forest Soil	ADARGVLEGLDLTEEERAAFLARDMTRINALGGYLHLVMSVPGLAIHITHPERD*
Ga0137391_109306561	3300011270	Vadose Zone Soil	LAGADLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH*
Ga0137456_11257092	3300011428	Soil	DLTDAERAAFVARDMRKINELGGYLHLVMSVPGLAAH*
Ga0137338_11310722	3300012174	Soil	DLSDEERRAFVARDARRINELGGYLHLVMSVPGIAGH*
Ga0137388_113642392	3300012189	Vadose Zone Soil	EPEAALADVDLSDDERRAFVARDARRINELGGYLHLVMSVPGIAGH*
Ga0137383_101404931	3300012199	Vadose Zone Soil	ALAGADLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH*
Ga0137363_117306931	3300012202	Vadose Zone Soil	AGTALAGADLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH*
Ga0137399_102662761	3300012203	Vadose Zone Soil	PAAALAGLDLTEPERSAFVARDMRKINELGGYLHLVMSIPGLAAH*
Ga0137379_114136171	3300012209	Vadose Zone Soil	PAAALAGLDLTEPERSAFIARDMRKINELGGYLHLVMSVPGLAAH*
Ga0137371_112021131	3300012356	Vadose Zone Soil	ALDGLDLTDAERAAFLARDMRRINALGGYLHLVMSVPGMAAHVTHAEPE*
Ga0157290_100835122	3300012909	Soil	RAALADADLTEAEREAFVAHDMRRINELGGYLHLVMSIPGLAAH*
Ga0137396_113003432	3300012918	Vadose Zone Soil	LTAAERAAFEERDMRKINELGGYLHLVMSVPGLAAH*
Ga0137394_1000434414	3300012922	Vadose Zone Soil	RSAFVARDMRRINELGGYLHLVMSIPGLAASQRATT*
Ga0137416_100994021	3300012927	Vadose Zone Soil	ALAGLDLTDAERAAFEARDMRKINELGGYLHLVMSVPGLAAH*
Ga0137404_110631102	3300012929	Vadose Zone Soil	RAAFLARDMERINALGGYLHLVMSVPGMAAHVTHTEPE*
Ga0153916_131738011	3300012964	Freshwater Wetlands	NEVADLTDAERAAFIARDMRRINGLRGYLHLVMSVPDLAAH*
Ga0134110_101417861	3300012975	Grasslands Soil	LSADERAAFAARDMRRINELGGYLHLVLSIPGLAVHPPRR*
Ga0137409_114098081	3300015245	Vadose Zone Soil	REPEAALADVDLSDDERRAFIARDARRINELGGYLHLVMSVPGIAGH*
Ga0137403_110509232	3300015264	Vadose Zone Soil	GADLTEAERAAFVRRDMRALNELGGYLHLVLSIPGMAAH*
Ga0134085_105200821	3300015359	Grasslands Soil	PEAALAGADLTEAERAAFIARDMRKVNELGGYLHLVMSIPGLAAH*
Ga0132258_115207171	3300015371	Arabidopsis Rhizosphere	ADARAALAGLDLSEAERAAFVARDVRRINELGGYLHLVMSVPGLAAH*
Ga0132255_1031330241	3300015374	Arabidopsis Rhizosphere	TRTIADLDLTDPERAAFIARDLRKINELGGYLHLVMSVPGLAVH*
Ga0134112_101021501	3300017656	Grasslands Soil	TRDPGTAVADADLTDAERSAFVARDMRKINELGGYLHLVMSIPGLAASHRATT
Ga0134083_105726502	3300017659	Grasslands Soil	GLDLTDAERAAFLARDMQRINALGGYLHLVMSVPGMAAHVTHPEPE
Ga0184608_100956031	3300018028	Groundwater Sediment	TEAERAAFVARDMRAINELGGYLHLVMSIPGLAAH
Ga0184634_105205321	3300018031	Groundwater Sediment	FEADARAALAGLDLTDAERAAFVARDMRKINELGGYLHLVMSVPGLAAH
Ga0190272_120563382	3300018429	Soil	LAGLDLTDAERAAFEARDMRKINELGGYLHLVMSVPGLAAH
Ga0193723_11533262	3300019879	Soil	AGLDLTDAEQAAFEARDMRKINELGGYLHLVMSVPGLAAH
Ga0193730_10103621	3300020002	Soil	ADAAASLAGLDLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH
Ga0193755_12015421	3300020004	Soil	SVLAGLDLTEAERAAFIARDMRRINELGGYLHLVMSVPGLAAH
Ga0194131_101043211	3300020193	Freshwater Lake	LAGADLTDTERAAFVAHDMRKINELGGYLHLVMSIPGLAAH
Ga0194120_101512951	3300020198	Freshwater Lake	DLTDTERAAFVAHDMRKINELGGYLHLVMSIPGLAAH
Ga0193695_11135321	3300021418	Soil	AGLDLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH
Ga0210073_10193871	3300025569	Natural And Restored Wetlands	LDLTDAERAAFVARDMRKINELGGYLHLVMSVPGLAAH
Ga0207647_102978541	3300025904	Corn Rhizosphere	SALADLDLTEDERAAFIARDMRRINELGGYLHLVMSVPGLAAH
Ga0207709_112352691	3300025935	Miscanthus Rhizosphere	PAQAIADLDLSEVERAAFVERDRRRINELGGYLHLVMSIPGLARH
Ga0207668_106729481	3300025972	Switchgrass Rhizosphere	ARFVANGADALADLDLSNEERAAFLAHDMRKINELGGYLHLVMSIPGLAGH
Ga0209055_10115001	3300026309	Soil	LAGLDLTEPERSAFIARDMRKINELGGYLHLVMSIPGLAAH
Ga0209152_101256892	3300026325	Soil	GERAAFRARDMERINALGGYLHLVMSVPGMAAHVTHTEPE
Ga0209802_12626302	3300026328	Soil	EADAGTALAGADLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH
Ga0209803_12545162	3300026332	Soil	AAALAGADLTADERAAFVARDMRRINELGGYLHLVMSIPGLAAH
Ga0257173_10079773	3300026360	Soil	QADAAAALAGLDLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH
Ga0257171_10399682	3300026377	Soil	RAALVGLDLTDAERAAFVARDMRKINELGGYLHLVMSVPGLAAH
Ga0209690_12091821	3300026524	Soil	SAFVARDMRRINELGGYLHLVMSIPGLAASQRATT
Ga0209157_10384713	3300026537	Soil	DLTEAERAAFIARDMRKVNELGGYLHLVMSIPGLAAH
Ga0209156_101346552	3300026547	Soil	DAERAAFLARDMQRINALGGYLHLVMSVPGMAAHVTHPEP
Ga0256865_10901932	3300027657	Soil	DPAAAVAGLDLTDAERAAFIARDMKRINALGGYLHLVMSVPGLAAHVTHPEREA
Ga0209726_100969464	3300027815	Groundwater	LIGLDLTDAERAAFVARDMRKINELGGYLHLVMSVPGLAAH
Ga0209481_103525542	3300027880	Populus Rhizosphere	VVHADLTEAERAAFVARDMRRINELGGYLHLVMSIPGLAAH
Ga0247828_102708161	3300028587	Soil	VDLTEAERAAFVNHDMRRINELGGYLHLVMSVPGLAAH
Ga0247818_111588561	3300028589	Soil	DPGPAIATADLSDAERAAFVARDMRRINELGGYLHLVMSIPGLAAH
Ga0247820_105222892	3300028597	Soil	EALADLDLSNEERAAFLAHDMRKINELGGYLHLVMSIPGLAGH
Ga0307504_104197261	3300028792	Soil	YLADTTGSIVELDLTDAERAAFVARDMRRINELGGYLHLVMSVPGLAAH
Ga0307312_104133231	3300028828	Soil	GLDLTEAERAAFIARDMRRINELGGYLHLVMSVPGLAAH
Ga0299907_104283211	3300030006	Soil	EDAAGALAEADLTDAERAAFVARDMRQINELGGYLHLVMSIPGLAGH
Ga0310888_108038481	3300031538	Soil	ADADLTEAERAAFAAHDMRRINELGGYLHLVMSVPGLAAH
Ga0307469_106867641	3300031720	Hardwood Forest Soil	EPEAALANVDLTEDERRAFVARDARRINELGGYLHLVMSVPGIAGH
Ga0307473_115522222	3300031820	Hardwood Forest Soil	LTGIDLTEAERAAFVAHDMRRINELGGYLHLVMSVPGLAAH
Ga0214473_107280543	3300031949	Soil	RAAFIARDMTRINALGGYLHLVMSVPGLAAHVTHAERAD
Ga0335079_117119232	3300032783	Soil	AFLARDMTRINALGGYLHLVMSVPGLAVHITHPERE
Ga0335083_104892321	3300032954	Soil	DEERAAFLARDMTRINALGGYLHLVMSVPGLAVHITHPERE
Ga0316628_1037190721	3300033513	Soil	ADADLTEAERAAFATRDVRRINELGGYLHLVMSVPGLAAH

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