NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095260

Metagenome Family F095260

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095260
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 51 residues
Representative Sequence VPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKKSGYNDLA
Number of Associated Samples 68
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 87.38 %
% of genes near scaffold ends (potentially truncated) 95.24 %
% of genes from short scaffolds (< 2000 bps) 83.81 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.238 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.191 % of family members)
Environment Ontology (ENVO) Unclassified
(66.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.952 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1Ga0066388_1001184341
2Ga0066388_1008060981
3Ga0066388_1023684501
4Ga0066388_1056249592
5Ga0066388_1056575641
6Ga0066903_1010409024
7Ga0066903_1030886501
8Ga0066903_1065323691
9Ga0066903_1068797122
10Ga0066903_1086554201
11Ga0075026_1005419942
12Ga0066653_105352551
13Ga0066660_109577852
14Ga0126373_106492471
15Ga0126373_106674461
16Ga0126373_113311981
17Ga0126376_124872801
18Ga0126378_109929981
19Ga0126378_119632671
20Ga0126381_1037463332
21Ga0126381_1045934483
22Ga0124850_10424644
23Ga0137376_106212731
24Ga0126369_108309211
25Ga0182036_107538872
26Ga0182041_117880041
27Ga0182035_101863001
28Ga0182035_109731831
29Ga0182035_115175052
30Ga0182035_120290641
31Ga0182032_107833411
32Ga0182032_108227371
33Ga0182032_116292492
34Ga0182032_116698022
35Ga0182034_109488061
36Ga0182034_112001761
37Ga0182040_104013463
38Ga0182040_104928341
39Ga0182037_101035681
40Ga0182039_109329231
41Ga0182039_119561112
42Ga0182038_117399503
43Ga0187817_109531441
44Ga0187817_109952571
45Ga0187822_101115021
46Ga0187767_100640051
47Ga0187765_102202441
48Ga0126371_113962163
49Ga0209325_10456432
50Ga0170824_1124046352
51Ga0318516_106253881
52Ga0318528_106847181
53Ga0310915_100632011
54Ga0318574_102300702
55Ga0318560_100525034
56Ga0307476_110675162
57Ga0318493_104474642
58Ga0318501_106032831
59Ga0306918_111326443
60Ga0306918_115050711
61Ga0307477_107184001
62Ga0318509_100745841
63Ga0318521_110511311
64Ga0318546_101731503
65Ga0318498_103695061
66Ga0318547_101416903
67Ga0318567_101790073
68Ga0310917_101776561
69Ga0310917_107254501
70Ga0306919_101136731
71Ga0306925_101480621
72Ga0306925_102064571
73Ga0306925_102962444
74Ga0306925_120186421
75Ga0318551_101115761
76Ga0306923_100153855
77Ga0306923_110021161
78Ga0306923_119575721
79Ga0306921_101701823
80Ga0306921_104276122
81Ga0306921_105019561
82Ga0310912_101076645
83Ga0310916_110522841
84Ga0310913_107837072
85Ga0310910_101051111
86Ga0306926_102443675
87Ga0306922_118201871
88Ga0310911_100415301
89Ga0310911_100696893
90Ga0318549_103348731
91Ga0318545_100198884
92Ga0318545_102891421
93Ga0318558_106172191
94Ga0318532_101255012
95Ga0318533_106134312
96Ga0318514_107195192
97Ga0306924_111052044
98Ga0318577_100678863
99Ga0307471_1037676211
100Ga0306920_1002611071
101Ga0306920_1002877711
102Ga0306920_1014512751
103Ga0306920_1041642331
104Ga0310914_101603653
105Ga0310914_118248142
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.36%    β-sheet: 2.56%    Coil/Unstructured: 73.08%
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Variant

5101520253035404550VPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKKSGYNDLASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
24.8%75.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Watersheds
Vadose Zone Soil
Tropical Forest Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
2.9%9.5%30.5%36.2%2.9%10.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066388_10011843413300005332Tropical Forest SoilMPRYFFTIQGQDRVEDDPDGTYLPDAEAALCYAEYTIRELRRKSGYNDLA
Ga0066388_10080609813300005332Tropical Forest SoilMLRYFFTIHRHGRAENDPDGTYLPDAEAALSYADCTIRELRKQGVYDDDLSLMMI
Ga0066388_10236845013300005332Tropical Forest SoilLLAETGRSMRRYFFTVHGQDRVADDPEGTYLPDEAAALSYAEYTIRGLRKKSGYTYNNDPAL
Ga0066388_10562495923300005332Tropical Forest SoilMPRYFFTIHRGDRIKDDPDGTYLPDVAAALSYAEHTIRELRKKSGYNDLAL
Ga0066388_10565756413300005332Tropical Forest SoilVLRYFFTIHGRDRVEDDPDGIDLPDAAAALSHAEHTIRELRKKSGYTYNNDPALMMFV
Ga0066903_10104090243300005764Tropical Forest SoilMPRYFFTIHGRAQVEDDPAGTYLPDAAAALSYAEHTIRELRKKSGYTYNNDPA
Ga0066903_10308865013300005764Tropical Forest SoilMPQYFFTIHGQDRVADDPEGTYLPDVAAALSYAEYTIRGLRKKSGY
Ga0066903_10653236913300005764Tropical Forest SoilVPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKKSGYNDLA
Ga0066903_10687971223300005764Tropical Forest SoilMRRYFFTVHGQDRVADDPEGTYLPDEAAALSYAEYTIRGLRKKSGYTYNNDPALMMIVK
Ga0066903_10865542013300005764Tropical Forest SoilMPRYFFTIHGRAQVEDDPVGTYLPDRAAALSYAEYTIQELRKKSGYNDPGSHDDDKG*
Ga0075026_10054199423300006057WatershedsMPRYFFTIHRQDRVENGPDGAYLPDAEAALSYADYTIRGLRKKSGYE
Ga0066653_1053525513300006791SoilVPRYFFTIHGRDRVEDDHDGTYLPDVAAALSYAEHTIRDLRKESGYKDDPALM
Ga0066660_1095778523300006800SoilVAQYFFTIHGGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKESGYKDDLALMMIVT
Ga0126373_1064924713300010048Tropical Forest SoilMPRYFFTIYGRAKVDDDRAGTDLPDVAAALSYAEYTIRELRKKSGYKNDLALMM
Ga0126373_1066744613300010048Tropical Forest SoilMPRYSFTIHGRDRVADDPDGTYLPDEAAALSYAEYTIRELRKKSGYKNDLALMMFVK
Ga0126373_1133119813300010048Tropical Forest SoilMPRYFFTIHRQHRVENDHAGTYLPNVAAALSYAEDTIWELRKQNGYKDDLSLMMMVRD
Ga0126376_1248728013300010359Tropical Forest SoilVPQYFFTIHRGNRVKDDPDGTYLPDLAAALSYAEHTIQELRKKSGYDDLT
Ga0126378_1099299813300010361Tropical Forest SoilVDQVEHDPDGTYLRNVAEALSHAEYTIREQRKKSSYNDLALMMIVTDQSR
Ga0126378_1196326713300010361Tropical Forest SoilVPQYFFAIHKGDRIKDDPDGTYLPDVMAALSYAEHTIRELRKKSGYDDLDLMMFVTDQS
Ga0126381_10374633323300010376Tropical Forest SoilMPRYFFSIHGRAEVDHDPADTYLPDVAAALSYAEHKIQELREKSDYNDPALMM
Ga0126381_10459344833300010376Tropical Forest SoilMPRYFFTIHGRAKIEDDPAGTYLPDVAAPLSYAEHTIRELCKKSG
Ga0124850_104246443300010863Tropical Forest SoilMPRYFFTIHREDRTQNDPDGTYLSDAEAALSYADYTIRELRKKSVYKDD
Ga0137376_1062127313300012208Vadose Zone SoilVPQYFFTIHGRERVEDDRSGTYLPDVAAALSYAEHTIRVLRNESGYKDD
Ga0126369_1083092113300012971Tropical Forest SoilMPGYFFTIHRQDRVENAADTYLPDVPAALSYAEDTIRGLRKQNGYKDN
Ga0182036_1075388723300016270SoilVPRYFFTIHRRDRVEDDPDGTYLPDAETALCYADYTIRELRKKSAYKDDLTL
Ga0182041_1178800413300016294SoilVPRYFFTIHRRDRVEDDPDGTHLPDVAAALSYGEYTIRELRKKSG
Ga0182035_1018630013300016341SoilVPQYFFTIHRGNRVKDDADGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMDQ
Ga0182035_1097318313300016341SoilVPRYFFRIHREHRVEDDPDGTYLPDDTAALSYAEHTIRELRKKSGYTYNNDPA
Ga0182035_1151750523300016341SoilMPRYFFTTHGRAKVEDDPAGTDLPDVAAALSYAEYTIRELR
Ga0182035_1202906413300016341SoilMPRYSFTIHRQDRVENHLGDTYLPDVAAALSYAEDTIRELRKQNGYKDDLSL
Ga0182032_1078334113300016357SoilVPRYFFTIHGRNRLEDDRDGTYLPDVAAALSYAEYTIRELRKKSG
Ga0182032_1082273713300016357SoilMPRYSFTIHRQDRVENHPGDTYLPNVAAALSYAEDTIRELRKQNGYKDDLSLMMMVKD
Ga0182032_1162924923300016357SoilMPQYFFTIHGRAKVDDDRAGTDLPDVAAALSYAEYTIRELRKK
Ga0182032_1166980223300016357SoilVPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKK
Ga0182034_1094880613300016371SoilVPQYFFTIHRGDRVEDDPDSTYLPDVTAALSYAEHTIQELRKKSGYNDLA
Ga0182034_1120017613300016371SoilSLETGRSMPRYFFTIHGLDRVADDPEGTYLPDEAAALSYAEYTIRELRKKSGYNRPA
Ga0182040_1040134633300016387SoilVPQYFFTIHRGNRVKDDADGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMD
Ga0182040_1049283413300016387SoilVPKYFFTIHRGNRVKDDLDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMDQ
Ga0182037_1010356813300016404SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMF
Ga0182039_1093292313300016422SoilVPRYSFTIHGRDRVADDPDGTYLPDVAVALSYAEYTIRELRKKSGYKNDLALMM
Ga0182039_1195611123300016422SoilMPRYFFTIHGRAQVEDDPAGTYLPDAAAALSYAEHTIRELRKKSGYNDLALMM
Ga0182038_1173995033300016445SoilMPRYFFTIHGRAQVEDDPVGTYLPDRAAALSYAEYTIRELRKKSGYN
Ga0187817_1095314413300017955Freshwater SedimentMSERLMPRYFFTIHGRAKIEDDRAGTYLPDVEAAFSYAEYTIRELRKKSGYNDPALMMII
Ga0187817_1099525713300017955Freshwater SedimentMPRYFFTIHGREQDDPDGTYLPDVAAALSYAEYTIRELRKKSGYNDLALMMMVNDEA
Ga0187822_1011150213300017994Freshwater SedimentMPRYFFTIHKQDRVEDDPGGTYLPDAEAALSYAEYTIRELRKKSGYKDDL
Ga0187767_1006400513300017999Tropical PeatlandMECSVYRYFFTIRGPDRVEDDPDGAYLPDAAAALTYAEYTIRELRKKDGWNDP
Ga0187765_1022024413300018060Tropical PeatlandMECSVHRYFFTIRGPDRVEDDPDGAYLPDAAAALTYAEYTIRELRKKDGWNDP
Ga0126371_1139621633300021560Tropical Forest SoilVPQYFFTIHRGDRVEDDRDGTYLPDDTAALSYAEHTIWGLRKKSGY
Ga0209325_104564323300027050Forest SoilMPRYFFTIHRQDRVENGPDGAYLPDAEAALSYADYTIRGLRKKRAATRMICL
Ga0170824_11240463523300031231Forest SoilVAQYFFTIHGGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKESGYKDDLALMMIVTDH
Ga0318516_1062538813300031543SoilVPRYFFTIHRRDRVEDDPDGTHLPDVAAALSYGEYTIRELRKKSGYTYNNDP
Ga0318528_1068471813300031561SoilMPQYFFTIHGREQVEDDPAGTCLPNVEAALSHAEYIIRELRKK
Ga0310915_1006320113300031573SoilMPRYFFTTHGRAKVEDDPAGTDLPDVSAALSYAEYTIRELRNKS
Ga0318574_1023007023300031680SoilMPQYFFTIHGREQVEDDPAGTYLPNVEAALSHAEYIIRELRKRAATGIIWL
Ga0318560_1005250343300031682SoilMPRYFFTIQRQDRVENYPGDAYLPDVAAALSYADDTIQELRKQNGYKDDLSLMM
Ga0307476_1106751623300031715Hardwood Forest SoilMPRYFFTIRRQDRFENGPDSAYLPDAEAALSYADYAIRGLRKKSGYEDDLSLMM
Ga0318493_1044746423300031723SoilMPRYFFTIHRQDRVEDDRDGTYLPDADAALSYADYTIRELRKKSGYKDDL
Ga0318501_1060328313300031736SoilMPRYFFTIHRQDRAQNDPDGTYLPDAEAALSYADHTIQELRKKNAYEGD
Ga0306918_1113264433300031744SoilMPRYSFTIHRQDRVENHPGDTYLPNVAAALSYAEDTIRELRKQNGYKDD
Ga0306918_1150507113300031744SoilMPRYFFTIHRQDRVENDHAGTYLPDVAAALSYAEYTIRELRKQNGYKDDLALMMMVKEA
Ga0307477_1071840013300031753Hardwood Forest SoilMPRYFFTIDRQDRVENGPDGAYLPDTEAALSYADYTIRGLRKKSGYEDEVLSLPFFPGQ
Ga0318509_1007458413300031768SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKS
Ga0318521_1105113113300031770SoilVPQYFFTIHREDRVKDDLDGTYLPDVAAALSYAEHIIQELRKKSGYDDLALMMFVMD
Ga0318546_1017315033300031771SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVTDQS
Ga0318498_1036950613300031778SoilMPRYFFTIHGQDRVADDPEGTYLPDAAVALFYAEYTIRGLRKKSGYEDDLSLM
Ga0318547_1014169033300031781SoilMPRYFFTIHGQDRVADDPESTYLPDEAAALSYTEYKIRELRKKSGYTDSGSDDVRR
Ga0318567_1017900733300031821SoilMPRYFFTIHRQDRVEDDRDGTYLPDADAALSYADYTIRELRKKSGYK
Ga0310917_1017765613300031833SoilMRRYFFTIHGQDRVADDPEGTYLPDEAAALSYAEYTIRVLRKKSDYEDDLSLMMMV
Ga0310917_1072545013300031833SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMDQ
Ga0306919_1011367313300031879SoilVPQYFFTIHRGNRVKDDADGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMDQC
Ga0306925_1014806213300031890SoilVPRYFFTIHRRDRVEDDPDGTHLPDVAAALSYGEYTIRELRKKSGYKD
Ga0306925_1020645713300031890SoilMPRYSFTIHRQDRVENHLGDTYLPDVAAALSYAEDTIRELRKQNGYKDDLSLMMMV
Ga0306925_1029624443300031890SoilVPQYFFTIHRGNRVKDDADGTYLPDVAAALSYAEHTIQELRKKSGYDDL
Ga0306925_1201864213300031890SoilVPQYFFTIHRGDRVEDDPDSTYLPDVTAALSYAEHTIQELRKKSGYNDLALMMIV
Ga0318551_1011157613300031896SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMM
Ga0306923_1001538553300031910SoilMPQYFFTIHGREQVEDDPAGTCLPNVEAALSHAEYI
Ga0306923_1100211613300031910SoilVPRYFFTIHGRNRLEDDRDGTYLPDVAAALSYAEYTIRELRKKSGCNDLALMMFV
Ga0306923_1195757213300031910SoilVPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIRELRKKSGYNDLALM
Ga0306921_1017018233300031912SoilVPQYFFTIHRGDRVEDDPDSTYLPDVTAALSYAESTIRELQKKM
Ga0306921_1042761223300031912SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVT
Ga0306921_1050195613300031912SoilVPQYFFTIHRGDRVEDDPDGTYLPDVAAALSYAEHTIQELRKKSGYNDLALMMFVTDQST
Ga0310912_1010766453300031941SoilMPRYFFTTHGRAKVEDDPAGTDLPDVAAALSYAEYTIRELRNKSDYTYNND
Ga0310916_1105228413300031942SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVMDQC
Ga0310913_1078370723300031945SoilVPQYFFTIHRGDRVEDDPDSTYLPDVTAALSYAEHTIQELRKKS
Ga0310910_1010511113300031946SoilMPQYFFTIHGREQVEDDPAGTYLPNVEAALSHAEYIIR
Ga0306926_1024436753300031954SoilMPRYFFTTHGRAKVEDDPAGTDLPDVAAALSYAEYTIRELRNKSD
Ga0306922_1182018713300032001SoilMPRYFFTIHRRDRVENDPASTCLPDEAAALSYAEYTIRELRIQNGYKDDL
Ga0310911_1004153013300032035SoilMPQYFFTIHGREQVEDDPAGTYLPNVEAALSHAEYI
Ga0310911_1006968933300032035SoilVPQYFFTIHREDRVKDDLDGTYLPDVAAALSYAEHIIQELRKKSGYDDLALMMFVM
Ga0318549_1033487313300032041SoilVPRYFFTIHRRDRVEDDPDGTHLPDVAAALSYGEYTIRELRKKSGYT
Ga0318545_1001988843300032042SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMFVTD
Ga0318545_1028914213300032042SoilMPRYFFTIHRQDRAENDPEGTYLQDAEAALSYADYTIRELRKKSVYE
Ga0318558_1061721913300032044SoilMPQYFFTIHGREQVEDDPAGTCLPNVEAALSHAEYIIRELRKKSGYKD
Ga0318532_1012550123300032051SoilMPRYFFTIHGRAKIEDDPAGTYLPDVAAALSYAEYTIRELLKKSGYTYNNDPA
Ga0318533_1061343123300032059SoilVPRYFFTIHGRNRLEDDRDGTYLPDVAAALSYAEYTIRELRKKSGCNDLALMM
Ga0318514_1071951923300032066SoilVPRYFFRIHREHRVEDDPDGTYLPDDTAAISYAEHTIRELRKKSGYDDLSL
Ga0306924_1110520443300032076SoilMPRYFFTIQGRAQVEDDPVGTYLPDRAAALSYAEYTIRELRKKSGY
Ga0318577_1006788633300032091SoilMPRYFFTIHRQDRVEDDRDGTYLRNAEAALSYADYTIRELRKKSGYKDDLSL
Ga0307471_10376762113300032180Hardwood Forest SoilMPRYFFTIDRQDRVENGPDGAYLPDTEAALSYADYTIRGLRKKSGYEDE
Ga0306920_10026110713300032261SoilVPKYFFTIHRGNRVKDDLDGTYLPDVAAALSYAEHTIQELRKKSGYDDLALMMF
Ga0306920_10028777113300032261SoilMRYFFTIHGQERVADDPEGTYLPDEAAALSYAEYTIRELRKKSVYNDLALMMFVKD
Ga0306920_10145127513300032261SoilVPQYFFTIHRGNRVKDDPDGTYLPDVAAALSYAEHTIQELRKKSGYDDL
Ga0306920_10416423313300032261SoilMPRYFFTIHGRAQVEDDPAGTYLPDVAAALSYAEHTIRELRKKS
Ga0310914_1016036533300033289SoilMPQYFFTIHGREQVEDDPAGTYLPNVEAALSHAEYIIRELRKKSGYKDN
Ga0310914_1182481423300033289SoilMPRYFFTIHRQDRAENDPEGTYLQDAEAALFYADYTIRELRKKIVYEDDLSLMM


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