Metagenome Family F095253

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095253
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	43 residues
Representative Sequence	EPGALRAALAASVLALMREGAEARLPHADVVAQRLAELR
Number of Associated Samples	90
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.19 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.952 % of family members)
Environment Ontology (ENVO)	Unclassified (26.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.381 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.76% β-sheet: 0.00% Coil/Unstructured: 52.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF04248	NTP_transf_9	1.90
PF00072	Response_reg	1.90
PF12867	DinB_2	1.90
PF07690	MFS_1	1.90
PF02861	Clp_N	1.90
PF00069	Pkinase	1.90
PF14219	DUF4328	1.90
PF08448	PAS_4	1.90
PF01135	PCMT	1.90
PF04191	PEMT	1.90
PF13847	Methyltransf_31	1.90
PF01594	AI-2E_transport	0.95
PF00584	SecE	0.95
PF10792	DUF2605	0.95
PF14534	DUF4440	0.95
PF14329	DUF4386	0.95
PF13450	NAD_binding_8	0.95
PF11139	SfLAP	0.95
PF05343	Peptidase_M42	0.95
PF02678	Pirin	0.95
PF02518	HATPase_c	0.95
PF01872	RibD_C	0.95
PF01625	PMSR	0.95
PF01548	DEDD_Tnp_IS110	0.95
PF08240	ADH_N	0.95
PF01266	DAO	0.95
PF12710	HAD	0.95
PF10604	Polyketide_cyc2	0.95
PF03734	YkuD	0.95
PF03459	TOBE	0.95
PF00106	adh_short	0.95
PF00582	Usp	0.95
PF00196	GerE	0.95
PF06224	HTH_42	0.95
PF01063	Aminotran_4	0.95
PF01668	SmpB	0.95
PF00353	HemolysinCabind	0.95
PF01243	Putative_PNPOx	0.95
PF07992	Pyr_redox_2	0.95
PF13460	NAD_binding_10	0.95
PF05050	Methyltransf_21	0.95
PF00561	Abhydrolase_1	0.95
PF13174	TPR_6	0.95
PF00211	Guanylate_cyc	0.95
PF01565	FAD_binding_4	0.95
PF01850	PIN	0.95
PF00067	p450	0.95
PF01061	ABC2_membrane	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.62
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.90
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	1.90
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	1.90
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.90
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.95
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2443	Preprotein translocase subunit Sss1	Intracellular trafficking, secretion, and vesicular transport [U]	0.95
COG2195	Di- or tripeptidase	Amino acid transport and metabolism [E]	0.95
COG2124	Cytochrome P450	Defense mechanisms [V]	0.95
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.95
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.95
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1363	Putative aminopeptidase FrvX	Carbohydrate transport and metabolism [G]	0.95
COG1362	Aspartyl aminopeptidase	Amino acid transport and metabolism [E]	0.95
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0690	Preprotein translocase subunit SecE	Intracellular trafficking, secretion, and vesicular transport [U]	0.95
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.95
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.95
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.86 %
Unclassified	root	N/A	37.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.86 %
Unclassified	root	N/A	37.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.86 %
Unclassified	root	N/A	37.14 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.00 %
Unclassified	root	N/A	37.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.19 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.00 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.95 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.38 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.95 %
Jatrophihabitantales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales	0.95 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.95 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Jatrophihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae	0.95 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.95 %
Panacagrimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas	0.95 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Jatrophihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans	0.95 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.95 %
Panacagrimonas perspica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	0.95 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.95 %
unclassified Jatrophihabitans	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans	0.95 %
Panacagrimonas perspica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	0.95 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Jatrophihabitans sp. GAS493	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp. GAS493	0.95 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.95 %
Panacagrimonas perspica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	0.95 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.95 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0683545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300000956\|JGI10216J12902_102215027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	746	Open in IMG/M
3300000956\|JGI10216J12902_116610764	Not Available	524	Open in IMG/M
3300002568\|C688J35102_118857948	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300004463\|Ga0063356_106266657	Not Available	510	Open in IMG/M
3300004643\|Ga0062591_101321589	Not Available	710	Open in IMG/M
3300005177\|Ga0066690_10713853	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005178\|Ga0066688_10235421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1170	Open in IMG/M
3300005181\|Ga0066678_10147936	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300005338\|Ga0068868_100356647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1254	Open in IMG/M
3300005436\|Ga0070713_101447980	Not Available	666	Open in IMG/M
3300005447\|Ga0066689_10420245	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005450\|Ga0066682_10321200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	999	Open in IMG/M
3300005518\|Ga0070699_101481960	Not Available	622	Open in IMG/M
3300005540\|Ga0066697_10652579	Not Available	579	Open in IMG/M
3300005557\|Ga0066704_10560892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300005559\|Ga0066700_10268141	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005559\|Ga0066700_10697275	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005576\|Ga0066708_10610693	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300005598\|Ga0066706_10333314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1200	Open in IMG/M
3300005598\|Ga0066706_10602443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300005981\|Ga0081538_10000143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	73830	Open in IMG/M
3300006791\|Ga0066653_10750117	Not Available	509	Open in IMG/M
3300006845\|Ga0075421_102516137	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006854\|Ga0075425_100764417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1108	Open in IMG/M
3300006871\|Ga0075434_101755528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	628	Open in IMG/M
3300006904\|Ga0075424_101859467	Not Available	636	Open in IMG/M
3300007076\|Ga0075435_100100699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2394	Open in IMG/M
3300009012\|Ga0066710_100169659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3066	Open in IMG/M
3300009012\|Ga0066710_102447882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300009012\|Ga0066710_103533870	Not Available	591	Open in IMG/M
3300009012\|Ga0066710_104238928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300009089\|Ga0099828_11726165	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300009090\|Ga0099827_10935229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	751	Open in IMG/M
3300009137\|Ga0066709_100667155	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300009176\|Ga0105242_11400943	Not Available	726	Open in IMG/M
3300010037\|Ga0126304_10140222	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300010322\|Ga0134084_10311894	Not Available	588	Open in IMG/M
3300010323\|Ga0134086_10409347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300010371\|Ga0134125_12832071	Not Available	527	Open in IMG/M
3300012186\|Ga0136620_10404613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300012201\|Ga0137365_10193707	Not Available	1521	Open in IMG/M
3300012204\|Ga0137374_10581686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	856	Open in IMG/M
3300012207\|Ga0137381_11032545	Not Available	708	Open in IMG/M
3300012208\|Ga0137376_11779723	Not Available	507	Open in IMG/M
3300012209\|Ga0137379_10379684	Not Available	1322	Open in IMG/M
3300012209\|Ga0137379_11301237	Not Available	632	Open in IMG/M
3300012210\|Ga0137378_11214603	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012211\|Ga0137377_10675349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	968	Open in IMG/M
3300012351\|Ga0137386_11103112	Not Available	560	Open in IMG/M
3300012532\|Ga0137373_10583646	Not Available	844	Open in IMG/M
3300012957\|Ga0164303_11295020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300012986\|Ga0164304_10107869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1675	Open in IMG/M
3300013297\|Ga0157378_10972112	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300013770\|Ga0120123_1176785	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300013772\|Ga0120158_10147052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1311	Open in IMG/M
3300014487\|Ga0182000_10160937	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300015201\|Ga0173478_10763022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300015373\|Ga0132257_101443503	All Organisms → cellular organisms → Bacteria → Terrabacteria group	877	Open in IMG/M
3300015373\|Ga0132257_101683787	Not Available	813	Open in IMG/M
3300015373\|Ga0132257_103186380	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300017654\|Ga0134069_1328467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300017965\|Ga0190266_10394064	Not Available	765	Open in IMG/M
3300017965\|Ga0190266_10529488	Not Available	694	Open in IMG/M
3300018027\|Ga0184605_10186664	Not Available	939	Open in IMG/M
3300018051\|Ga0184620_10228940	Not Available	622	Open in IMG/M
3300018054\|Ga0184621_10118058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	947	Open in IMG/M
3300018054\|Ga0184621_10296880	Not Available	570	Open in IMG/M
3300018071\|Ga0184618_10181606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	873	Open in IMG/M
3300018081\|Ga0184625_10195183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1061	Open in IMG/M
3300018422\|Ga0190265_13048098	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300018431\|Ga0066655_10279864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1079	Open in IMG/M
3300019356\|Ga0173481_10409883	Not Available	666	Open in IMG/M
3300021073\|Ga0210378_10166208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	849	Open in IMG/M
3300022694\|Ga0222623_10324481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300025927\|Ga0207687_11467698	Not Available	586	Open in IMG/M
3300025933\|Ga0207706_10391658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300025944\|Ga0207661_10925237	Not Available	803	Open in IMG/M
3300026089\|Ga0207648_12243281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → unclassified Jatrophihabitans → Jatrophihabitans sp. GAS493	507	Open in IMG/M
3300026530\|Ga0209807_1313942	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300026650\|Ga0208217_100095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1101	Open in IMG/M
3300027490\|Ga0209899_1009698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2199	Open in IMG/M
3300027748\|Ga0209689_1159564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1063	Open in IMG/M
3300028708\|Ga0307295_10191860	Not Available	577	Open in IMG/M
3300028715\|Ga0307313_10102160	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300028722\|Ga0307319_10115203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300028755\|Ga0307316_10098669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1017	Open in IMG/M
3300028784\|Ga0307282_10194329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	969	Open in IMG/M
3300028784\|Ga0307282_10574575	Not Available	547	Open in IMG/M
3300028796\|Ga0307287_10352238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300028799\|Ga0307284_10024720	All Organisms → cellular organisms → Bacteria	1961	Open in IMG/M
3300028811\|Ga0307292_10068306	Not Available	1356	Open in IMG/M
3300028814\|Ga0307302_10291671	Not Available	801	Open in IMG/M
3300028814\|Ga0307302_10300283	Not Available	790	Open in IMG/M
3300028824\|Ga0307310_10015191	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300028884\|Ga0307308_10358382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300028884\|Ga0307308_10546447	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300028885\|Ga0307304_10335680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300030514\|Ga0268253_10035331	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300032075\|Ga0310890_11218111	Not Available	613	Open in IMG/M
3300032159\|Ga0268251_10184483	Not Available	808	Open in IMG/M
3300032174\|Ga0307470_11410537	Not Available	575	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.90%
Host-Associated	Host-Associated	18.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.33%
Plants	Host-Associated → Plants	18.10%
Aquatic	Environmental → Aquatic	8.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.57%
Sediment	Environmental → Aquatic → Sediment	6.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.67%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Phylloplane	Host-Associated → Plants → Phylloplane	1.90%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.67%
Loam	Environmental → Terrestrial → Soil → Loam	5.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.43%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.95%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026650	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1120 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_06835451	2228664021	Soil	ETHVGSLEPAALRAALAAAVVALTSEGAKAGLPNAQIVADRLAELG
JGI10216J12902_1022150271	3300000956	Soil	HAGSVDPGALRAALAASVRALLHEGAEADLAHAGVVAERLSSLAR*
JGI10216J12902_1166107642	3300000956	Soil	ALRAALAASVSALMREGADADLITAKVVAERLADLH*
C688J35102_1188579482	3300002568	Soil	AAVEPDALREALAASVLALVDQGAEAGLPDVDVVAERLAEFR*
Ga0063356_1062666571	3300004463	Arabidopsis Thaliana Rhizosphere	DAHVGAVEPAALRTALAASTRTLLWEGAEAHLPHADVVAQRLAELH*
Ga0062591_1013215891	3300004643	Soil	GLEPEALRAALAASVVALLHEGEEARLPQAATVAERLADLR*
Ga0066690_107138531	3300005177	Soil	HVGAVEPGALRAALAASVLALMREGAEARLPHAHVVAERLGELH*
Ga0066688_102354213	3300005178	Soil	HVGAVEPGALRAALAASVLALMRAGAEARLPQADTVTQRLAELR*
Ga0066678_101479361	3300005181	Soil	GAVEPGALRAALAASVLALIREGAEARLPHTDSVAQRLAELR*
Ga0068868_1003566474	3300005338	Miscanthus Rhizosphere	AHVGALEPEALRAVLAASVVALTREGTEADIPHAQVVAERLAELR*
Ga0070713_1014479802	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EPKELRAALAASVLGLVHEGAEAGLPHAHVVARRLAELH*
Ga0066689_104202451	3300005447	Soil	HFDDAHVGAIEPEALRAALAASALALMREGAEARLSRADVVAERLADLR*
Ga0066682_103212003	3300005450	Soil	EPGALRAALAASVLALMREGAEARLPHADVVAQRLAELR*
Ga0070699_1014819602	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	HVGAVEPGVLRAALAASVRALMREGAEARLPHAHIVAERLAELR*
Ga0066697_106525792	3300005540	Soil	SLARLERAHLGAVEPDALRAALAASVIELMRQGEEARLAHAETVALRLAELR*
Ga0070695_1012531631	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	AHIGALEPGALRTALAASAAALLHEGEEAHLPHARVVADRLAELQ*
Ga0066704_105608923	3300005557	Soil	RAALAASVLALMRAGAEARLPQADTVTQRLAELR*
Ga0066700_102681411	3300005559	Soil	AHVGALEPQPLRAALAASVLALMREGADARLSRADVVAERLADLR*
Ga0066700_103404081	3300005559	Soil	ALRAALGASVLALMREGAEACLPHAKAVAQRLADLG*
Ga0066700_106972751	3300005559	Soil	GALRAALAASVLALMREGAEARLPHADTVAQRLADRSSART*
Ga0066708_106106931	3300005576	Soil	VGALEPQALRAALAASVLALLREGADARLPHADVVAERLADLR*
Ga0066706_103333141	3300005598	Soil	ALRAALGASVLALMREGAEARLPHANAVAQRLAGLG*
Ga0066706_106024432	3300005598	Soil	GALEPGALRAALAASALALIHEGAEARLPHAQVVAERLAELA*
Ga0081538_1000014321	3300005981	Tabebuia Heterophylla Rhizosphere	MKPGSLRAALAASVSTLIHEGAEADLPTANIVAERITELC*
Ga0066653_107501171	3300006791	Soil	LARFESSHVGAVDPDALRAALAGSVRGLIREGAEARLPNAATVAERLAELH*
Ga0075421_1025161372	3300006845	Populus Rhizosphere	LRAALAASVRALLRAGSEARLPHADTVAQRLAELR*
Ga0075425_1007644172	3300006854	Populus Rhizosphere	PDVLRAALAASVIELTRQGEEARLPHADTVALRLAELR*
Ga0075434_1017555282	3300006871	Populus Rhizosphere	SGALRAALAASVLALMHEGAEAHLPNANVVAERLADIR*
Ga0075424_1018594671	3300006904	Populus Rhizosphere	AVERTALRAALAASVAELMREGVEARLPHAGIVEERLAELR*
Ga0075435_1001006991	3300007076	Populus Rhizosphere	ATEPDPLRAALAAAVGVLIREGEDANFPHADTVARRLAALQ*
Ga0066710_1001696591	3300009012	Grasslands Soil	LGAVEPLALREALAASVLALMREGADARLLHAPAVAQRLAELH
Ga0066710_1024478822	3300009012	Grasslands Soil	ETLARFENAHVGALEPEALRAALAASVSSLLHEGAEARLPHAETVAQGLAEFR
Ga0066710_1035338702	3300009012	Grasslands Soil	TLARFEGAHVGAVEPGALRAALATSVLELMRAGAEAGLPDADTVAQRLAELR
Ga0066710_1042389282	3300009012	Grasslands Soil	GALEPGALRAALAASVLALMREGAESRLPHAQVVAERLAEFR
Ga0099828_117261651	3300009089	Vadose Zone Soil	DAHVGAVEPGALRAALAASVLALMHEGAEARLPHAHVVAERLGELR*
Ga0099827_109352292	3300009090	Vadose Zone Soil	AHVGALEPGTLRAALAASVLALMGEGAEAGLPHADTVAQRLAEFR*
Ga0066709_1006671553	3300009137	Grasslands Soil	ALRAALAASVLALLREGAEARLPHTDAVAQRLAELR*
Ga0105242_114009433	3300009176	Miscanthus Rhizosphere	ATEPDPLRAALAASVGALMREGVDANLPHADTVGRRLAGLQ*
Ga0126304_101402221	3300010037	Serpentine Soil	AHVGAVEPGALRAALAACVVALMRAGAEARLPHADTVAQRLAELG*
Ga0134084_103118941	3300010322	Grasslands Soil	EILAQFEAAHVGAVEPGTLRAALAASVLVLMRVGAEAGLPHADTVAQRLAELR*
Ga0134086_104093471	3300010323	Grasslands Soil	DALVGALKPGALRKALAASVLALMREGADARLPDAQVVAERLAELA*
Ga0134125_128320712	3300010371	Terrestrial Soil	SLEPGVLRTALAASVLALMREGAEARLPHAEAVGQRLEGWR*
Ga0136620_104046131	3300012186	Polar Desert Sand	GALRAALAASVLALMRAGAEARLPHADTVAQRLAELR*
Ga0137365_101937073	3300012201	Vadose Zone Soil	LARSEDAHVGAVEPGALRAALAASVLALTREGAEARLPHARVVAERLAELY*
Ga0137374_105816861	3300012204	Vadose Zone Soil	TLAPFGDTHIGAVEPGALRTALAASVLALMREGAETRLPHAHVVAARLAELH*
Ga0137381_110325452	3300012207	Vadose Zone Soil	FEHAHVSAVEPGALRAALAASVLALMHEGTEAHLAHADVVAQRLAELR*
Ga0137376_117797231	3300012208	Vadose Zone Soil	RAALAASVLALMHEGAEARLPHAHVVADRLGELH*
Ga0137379_103796842	3300012209	Vadose Zone Soil	LARFEDAHVSAVEPGALRAALAASVLALMREGAEARLPHPEVVAQRLAELC*
Ga0137379_113012372	3300012209	Vadose Zone Soil	FEDAHVGALEPGALRAALAASVLALTHEGAEARLPHAQVVAERLAELS*
Ga0137378_112146033	3300012210	Vadose Zone Soil	YAHVGAAEPATLRAALAASVLALMREGAGARLPHSDTVAQHLADLC*
Ga0137377_106753491	3300012211	Vadose Zone Soil	HVSAVEPGALRAALAASVLALMHEGTEARLPHADVVAERLAELR*
Ga0137386_111031121	3300012351	Vadose Zone Soil	LRAALAASVLALMREGAEARLPHAQVVGQRLAELG*
Ga0157338_10129151	3300012515	Arabidopsis Rhizosphere	QPDALREALAASVSALVEEAAAAELAGVEVVAERLAELRAL*
Ga0137373_105836462	3300012532	Vadose Zone Soil	GAVERGVLRAALAASVLALMREGAEARLPPADTVAQRLAELH*
Ga0164303_112950202	3300012957	Soil	ALAASVLALTREGSEARLPHAQVVAERLAELIVTS*
Ga0164304_101078693	3300012986	Soil	ALRAALTASVLALTSEGVDAGLPHAQVVVNRLAELL*
Ga0157378_109721122	3300013297	Miscanthus Rhizosphere	VGSLEPEALRAVLAASVVALTSEGIEAGLPHAQVVVNRLAELL*
Ga0120123_11767852	3300013770	Permafrost	HAHVGATESEPLRAALAASVLALMREGADARLSHADVVARRLAELH*
Ga0120158_101470523	3300013772	Permafrost	LARFEAAHVGALEPGALRAALAASVVALMREGEDARLPHADTVAQRLAELR*
Ga0182000_101609371	3300014487	Soil	VEGLDPEALRSALAASVRELAHEGAGADLPVADVVAERLADLR*
Ga0173478_107630221	3300015201	Soil	LRAALAASVLALTREGTEARLPHADVVAERLAELS*
Ga0132257_1014435031	3300015373	Arabidopsis Rhizosphere	LAPEPMRRALAATVQALLLEGAEARLPHAAVVAARLGELT*
Ga0132257_1016837873	3300015373	Arabidopsis Rhizosphere	ALEAEALRAALAASVAALEREGVEADLPNAHVVAECLAEIAR*
Ga0132257_1031863801	3300015373	Arabidopsis Rhizosphere	QTLARSERAHIGAVEPGALKTALAAAVVALVHEGVEAHLPHAPVVAERLAELS*
Ga0134069_13284672	3300017654	Grasslands Soil	LRAALAASVRALVGEGAKARLSHADVVSERLAELG
Ga0190266_103940641	3300017965	Soil	RFAATHVGAHDPVALRAALAASVAALMREGEDLPAASVVADRLMELLRP
Ga0190266_105294881	3300017965	Soil	VGALEPAALRTALAASVRELVREAFDARLPHADVVAQRLAALTD
Ga0184605_101866641	3300018027	Groundwater Sediment	HVGALEPAALRAALAAVVVALTREGAEARLPHAQVVAERLAGLR
Ga0184620_102289402	3300018051	Groundwater Sediment	LRAALAAVVVALTREGAEARLPHAQVVAERLAGLR
Ga0184621_101180582	3300018054	Groundwater Sediment	EDAHVAAVEPGALGAALAASVLALMREGAETRLPHAHVVAARLAELP
Ga0184621_102968802	3300018054	Groundwater Sediment	DVSAVEPGPLRAALAASVLALMREGAEARLRHADVVAQRLAELR
Ga0184618_101816061	3300018071	Groundwater Sediment	RAALAASVLALMHEGAEARLPHANVVAQRLAELSSASR
Ga0184625_101951832	3300018081	Groundwater Sediment	ARFEDAHVGAVEPGALRPALAASVLALTREGSEARLPNAQVVAERLAELR
Ga0190265_130480981	3300018422	Soil	GALRAALAAASRELLREGADADVPQAAVVASRLDELSRPG
Ga0066655_102798643	3300018431	Grasslands Soil	ARFEHAHVSVIEPGPLRAALAASVLALVREGAEARLPHADVVAQRLAELC
Ga0173481_104098832	3300019356	Soil	VATTRPASLRVALAASVSALLDEGLDAGLACSPVVAERLAELH
Ga0210378_101662082	3300021073	Groundwater Sediment	EDAHVSALEPRALRAALSASVLALMCEGAEARLPHADVVAQRLAALL
Ga0222623_103244811	3300022694	Groundwater Sediment	ETLARFEHAHVSALEPGPLRAALVASVLALMREGAEARLPHADIVAQRLAELR
Ga0207687_114676982	3300025927	Miscanthus Rhizosphere	TETLARYEDAHIGSLEPAALRAALAASVVALTAEGTEADIPHAQVVADRLAELR
Ga0207706_103916581	3300025933	Corn Rhizosphere	EALRAVLAASVVALTREGTEADIPHAQVVAERLAELR
Ga0207661_109252371	3300025944	Corn Rhizosphere	PEALRHALAASVTALVDTAAEADLPHADVVADRLAEFSAAANVPQ
Ga0207648_122432811	3300026089	Miscanthus Rhizosphere	LEPEALRAVLAASVVALTREGTEADIPHAQVVAERLAELR
Ga0209807_13139421	3300026530	Soil	ALRAALAASVLALMREGADARLPRADVVAERLADLR
Ga0208217_1000952	3300026650	Soil	EAGALRAALAACVVALLRAGTEAHLPHAETVAQRLVELC
Ga0209899_10096984	3300027490	Groundwater Sand	ALRAALAASVLALVREGRETRLPNAHVVAARLAEFH
Ga0209689_11595643	3300027748	Soil	VEPGALRAALAASVLALMRAGAEARLPQADTVAQRLAELR
Ga0307295_101918603	3300028708	Soil	PAALRKALAAAVLALMHEGSEAQLPHAETVAQRLAELR
Ga0307313_101021602	3300028715	Soil	LARFEDAHVSVVEPGALRAALAASVLALMREGAEARLPHADAVAHRLAELH
Ga0307319_101152031	3300028722	Soil	EPEALRAALAASVLELMRAGAEARLPHADTVAQRLAELR
Ga0307316_100986693	3300028755	Soil	EGEPLSTALAVSVVALIREGAEARLPHADVVAQRLAELR
Ga0307282_101943291	3300028784	Soil	PTALRAALAASVRSLMREGAEARLPHAPIVAERLAEFRSLMAG
Ga0307282_105745752	3300028784	Soil	LARFDDAHVGATEPELLRTALAASLLALMREGAEARLPHADVVAQRLAELH
Ga0307287_103522382	3300028796	Soil	HVSAVEPGALRAALAAAVLALLREGAEARLPHADVVAERLTDLS
Ga0307284_100247204	3300028799	Soil	PLRAALIASVLALIREGAEARLPHADVVAQRLAELG
Ga0307292_100683064	3300028811	Soil	TLARSEDAHVGALEPAALRAALAAVVVALTREGAEARLPHAQVVAERLAGLR
Ga0307302_102916711	3300028814	Soil	FEAAHVGALEPGALRAALAASVLALMRAGAEARLPHADSVAQRLAELR
Ga0307302_103002831	3300028814	Soil	GALRAALAASVLALMRAGAEARLPHADTVAQRLAELH
Ga0307310_100151913	3300028824	Soil	ARSEDAHVGALEPAALRAALAAVVVALTREGAEARLPHAQVVAERLAGLR
Ga0307308_103583821	3300028884	Soil	VTALEPGPLRAALIASVLALIREGAEARLPHADVVAQRLAELG
Ga0307308_105464471	3300028884	Soil	LARFEDAHVRAVEPGALRAALAASVLALMHEGAEARLPHADAVAHRLAELR
Ga0307304_103356801	3300028885	Soil	LTWFEDAHVTALEPGPLRAALIASVLALIREGAEARLPHADVVAQRLAELG
Ga0268253_100353311	3300030514	Agave	AHVGAVEAGALRAALAAGVVGLLRAGAEARLPHAETVAQRLAELG
Ga0310890_112181111	3300032075	Soil	DALARFEGAHVGTVEPGALRAALAASVRELIREGAAARLPHAEVVGERLAELR
Ga0268251_101844831	3300032159	Agave	AGALRAALAAGVVGLLRAGAEARLPHAETVAQRLVELC
Ga0307470_114105372	3300032174	Hardwood Forest Soil	APFEDAHVASLEPGVLRTALGASVLALTREGAEARLPHAEAVGQRLEGWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095253

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences