Metagenome Family F095220

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095220
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	77 residues
Representative Sequence	YQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Number of Associated Samples	64
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.91 %
% of genes near scaffold ends (potentially truncated)	93.33 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (60.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (43.809 % of family members)
Environment Ontology (ENVO)	Unclassified (80.952 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.952 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104. 1JGI25385J37094_100211392 2JGI25385J37094_101814852 3JGI25384J37096_100245602 4JGI25384J37096_101306662 5JGI25382J37095_100736021 6JGI25382J37095_101118962 7JGI25382J37095_102196202 8JGI25382J43887_100236291 9JGI25382J43887_100893172 10JGI25382J43887_102170031 11JGI25382J43887_103920711 12JGI25386J43895_100434021 13Ga0066672_100912603 14Ga0066680_100582611 15Ga0066680_100589322 16Ga0066680_100601201 17Ga0066680_100632242 18Ga0066680_101326051 19Ga0066688_107723411 20Ga0066685_100499531 21Ga0066686_101117902 22Ga0066686_102115642 23Ga0066686_103720202 24Ga0066689_101430372 25Ga0066689_102928401 26Ga0066689_105516951 27Ga0070706_1008870191 28Ga0070706_1013619761 29Ga0070697_1007599421 30Ga0066697_101618071 31Ga0066701_103498861 32Ga0066701_107154741 33Ga0066692_104892591 34Ga0066692_109265781 35Ga0066707_101709332 36Ga0066698_107850541 37Ga0066703_106816931 38Ga0066702_106786381 39Ga0066702_109077661 40Ga0066656_102363742 41Ga0066665_104297752 42Ga0066665_105611442 43Ga0066665_108335372 44Ga0066659_101788172 45Ga0066660_100197561 46Ga0066710_1001777263 47Ga0066710_1008295051 48Ga0066710_1009939142 49Ga0066710_1048783292 50Ga0099829_114816661 51Ga0099828_117507312 52Ga0066709_1039445471 53Ga0134082_100922882 54Ga0134071_101600521 55Ga0134071_105235642 56Ga0137388_107738142 57Ga0137380_104607812 58Ga0137386_100678531 59Ga0137367_111566052 60Ga0137373_103203152 61Ga0137397_111909871 62Ga0137416_117782162 63Ga0137416_118770761 64Ga0134077_103117991 65Ga0134075_101858563 66Ga0134075_101933541 67Ga0134075_104025311 68Ga0134089_100255273 69Ga0134089_102862262 70Ga0134089_105267622 71Ga0134112_103363542 72Ga0184634_105044762 73Ga0184640_100787193 74Ga0184639_102142782 75Ga0066655_106092591 76Ga0066662_105980152 77Ga0066662_108809622 78Ga0066662_110058702 79Ga0187893_101476131 80Ga0209235_10962061 81Ga0209235_12606882 82Ga0209237_10905941 83Ga0209236_10146453 84Ga0209236_10531783 85Ga0209236_11124831 86Ga0209236_11370402 87Ga0209055_11760241 88Ga0209055_12005381 89Ga0209802_10355373 90Ga0209802_10715132 91Ga0209802_12644942 92Ga0209803_13485442 93Ga0209158_13443682 94Ga0209377_10325932 95Ga0209377_11560671 96Ga0209690_10889352 97Ga0209690_13079901 98Ga0209378_12084651 99Ga0209157_11782542 100Ga0209056_101090651 101Ga0209161_100814551 102Ga0209689_11949342 103Ga0137415_103188081 104Ga0364942_0023145_2_286 105Ga0364932_0185476_207_410
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104. 1JGI25385J37094_100211392 2JGI25385J37094_101814852 3JGI25384J37096_101306662 4JGI25382J37095_100736021 5JGI25382J37095_101118962 6JGI25382J37095_102196202 7JGI25382J43887_103920711 8Ga0066672_100912603 9Ga0066680_100601201 10Ga0066685_100499531 11Ga0066686_102115642 12Ga0070706_1008870191 13Ga0070706_1013619761 14Ga0066697_101618071 15Ga0066701_107154741 16Ga0066692_109265781 17Ga0066698_107850541 18Ga0066703_106816931 19Ga0066656_102363742 20Ga0066665_105611442 21Ga0066660_100197561 22Ga0066710_1001777263 23Ga0066710_1008295051 24Ga0066710_1009939142 25Ga0066710_1048783292 26Ga0099829_114816661 27Ga0099828_117507312 28Ga0066709_1039445471 29Ga0134082_100922882 30Ga0134071_101600521 31Ga0134071_105235642 32Ga0137388_107738142 33Ga0137380_104607812 34Ga0137397_111909871 35Ga0137416_117782162 36Ga0137416_118770761 37Ga0134075_101858563 38Ga0134089_100255273 39Ga0134089_102862262 40Ga0184634_105044762 41Ga0184640_100787193 42Ga0184639_102142782 43Ga0066662_108809622 44Ga0066662_110058702 45Ga0187893_101476131 46Ga0209237_10905941 47Ga0209236_10146453 48Ga0209236_11124831 49Ga0209802_10355373 50Ga0209802_10715132 51Ga0209803_13485442 52Ga0209158_13443682 53Ga0209377_11560671 54Ga0209690_13079901 55Ga0137415_103188081 56Ga0364942_0023145_2_286 57Ga0364932_0185476_207_410
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0209690_10889352 2JGI25385J37094_101814852 3JGI25384J37096_100245602 4JGI25384J37096_101306662 5JGI25382J43887_103920711 6Ga0066680_100589322 7Ga0066680_100601201 8Ga0066688_107723411 9Ga0066685_100499531 10Ga0066689_105516951 11Ga0070706_1008870191 12Ga0070706_1013619761 13Ga0070697_1007599421 14Ga0066697_101618071 15Ga0066701_107154741 16Ga0066692_109265781 17Ga0066707_101709332 18Ga0066698_107850541 19Ga0066703_106816931 20Ga0066702_106786381 21Ga0066702_109077661 22Ga0066656_102363742 23Ga0066665_105611442 24Ga0066665_108335372 25Ga0066660_100197561 26Ga0066710_1009939142 27Ga0066710_1048783292 28Ga0099829_114816661 29Ga0099828_117507312 30Ga0066709_1039445471 31Ga0134082_100922882 32Ga0134071_101600521 33Ga0134071_105235642 34Ga0137388_107738142 35Ga0137380_104607812 36Ga0137397_111909871 37Ga0137416_117782162 38Ga0137416_118770761 39Ga0134075_101858563 40Ga0134075_101933541 41Ga0134089_100255273 42Ga0134089_102862262 43Ga0184634_105044762 44Ga0184640_100787193 45Ga0184639_102142782 46Ga0066662_108809622 47Ga0066662_110058702 48Ga0187893_101476131 49Ga0209237_10905941 50Ga0209055_12005381 51Ga0209802_10355373 52Ga0209802_10715132 53Ga0209802_12644942 54Ga0209803_13485442 55Ga0209377_11560671 56Ga0209690_13079901 57Ga0209056_101090651 58Ga0209689_11949342 59Ga0137415_103188081 60Ga0364942_0023145_2_286 61Ga0364932_0185476_207_410
Powered by MSAViewer

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.00% β-sheet: 0.00% Coil/Unstructured: 70.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13231	PMT_2	40.95
PF00535	Glycos_transf_2	8.57
PF00072	Response_reg	1.90
PF08281	Sigma70_r4_2	1.90
PF01075	Glyco_transf_9	1.90
PF03631	Virul_fac_BrkB	0.95
PF13189	Cytidylate_kin2	0.95

Showing 1 to 7 of 7 entries

Previous1Next

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	40.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	40.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.00 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.95 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	5.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %
Unclassified	root	N/A	60.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.90 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %
Unclassified	root	N/A	60.00 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	3.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.90 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.95 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	3.81 %
Unclassified	root	N/A	60.00 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10021139	Not Available	2322	Open in IMG/M
3300002558\|JGI25385J37094_10181485	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300002561\|JGI25384J37096_10024560	Not Available	2348	Open in IMG/M
3300002561\|JGI25384J37096_10130666	Not Available	828	Open in IMG/M
3300002562\|JGI25382J37095_10073602	Not Available	1268	Open in IMG/M
3300002562\|JGI25382J37095_10111896	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300002562\|JGI25382J37095_10219620	Not Available	573	Open in IMG/M
3300002908\|JGI25382J43887_10023629	Not Available	3293	Open in IMG/M
3300002908\|JGI25382J43887_10089317	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300002908\|JGI25382J43887_10217003	Not Available	907	Open in IMG/M

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.86%
Terrestrial	Environmental → Terrestrial	97.14%

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	0.95%
Floodplain	Environmental → Terrestrial → Floodplain	1.90%
Sediment	Environmental → Aquatic → Sediment	2.86%
Soil	Environmental → Terrestrial → Soil	94.29%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	70.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	26.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.86%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.95%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	43.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.48%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100211392	3300002558	Grasslands Soil	GWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
JGI25385J37094_101814852	3300002558	Grasslands Soil	FPHDYQEDLLQGWGMALGEDEVFSPAPWKGQESLVWMVATKGFSARSLLSIRQGKAQFEALFEGLAAIAQEPPRNQ*
JGI25384J37096_100245602	3300002561	Grasslands Soil	MALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
JGI25384J37096_101306662	3300002561	Grasslands Soil	PPAELERFPPAYQQGLLEGWGMALGEQELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ*
JGI25382J37095_100736021	3300002562	Grasslands Soil	EGLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
JGI25382J37095_101118962	3300002562	Grasslands Soil	YPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
JGI25382J37095_102196202	3300002562	Grasslands Soil	DDWGLAAELERFSHXYXXXLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ*
JGI25382J43887_100236291	3300002908	Grasslands Soil	MALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
JGI25382J43887_100893172	3300002908	Grasslands Soil	DERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
JGI25382J43887_102170031	3300002908	Grasslands Soil	DERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
JGI25382J43887_103920711	3300002908	Grasslands Soil	YQEGLLEGWGMALGEDERFSPYPWKGQESQSWMVATKGFSARSLVAIRQGKAQFEALFEGPASSALKPTRSP*
JGI25386J43895_100434021	3300002912	Grasslands Soil	GLLFDRLSITPWVPPAELERFPPAYQQGLLEGWGMALGEQELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ*
Ga0066672_100912603	3300005167	Soil	EGLLEGWGMALGEDDLFSELPLHGQGSPLWVAATKGLSARSLVSIQQGKAQFDALFEGPASSALAPPRHAR*
Ga0066680_100582611	3300005174	Soil	VYQEGLLEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
Ga0066680_100589322	3300005174	Soil	QEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0066680_100601201	3300005174	Soil	LIYMTPRVPSAELERFPQAYQQGLFEGWGMALGEDELFSLLPWKDQESLLWMAGTKGLSARSLVSIQQGKAQFDALFEGPAARALDPPLNQ*
Ga0066680_100632242	3300005174	Soil	QEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
Ga0066680_101326051	3300005174	Soil	AELERFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066688_107723411	3300005178	Soil	AYQEGLLEGWGMALGGEEEELYYPLPWKGQESFLWITATKGFSARSLVSIQQGKAQFEALFEEPASSALAPPFSP*
Ga0066685_100499531	3300005180	Soil	APWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066686_101117902	3300005446	Soil	LLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0066686_102115642	3300005446	Soil	PAYQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ*
Ga0066686_103720202	3300005446	Soil	FPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066689_101430372	3300005447	Soil	EGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLAFVQQGKAQFEALFEGPASRALEPP*
Ga0066689_102928401	3300005447	Soil	LLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ*
Ga0066689_105516951	3300005447	Soil	AELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLNQ*
Ga0070706_1008870191	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	HWSRPAELERFPPAYREGLLEGWGMALEEWELFSPWPWKGHDSPYWTAWTKGLSARSLVSVHQGKAQFDALFAEPARGKPRDEK*
Ga0070706_1013619761	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GEDEVFSPHPWRGQESLSWIVSTKGFSARSLVSIRQGKAQFEALFEGPATHALERPVSQR
Ga0070697_1007599421	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AYQEGLLEGWGMALGNGELFSGFPWKGQESPLWMAGTKGFSARSLVSVQRGKAQFEALFEGPNSSALQPPVSQ*
Ga0066697_101618071	3300005540	Soil	EGWGMGLGEFELFPPSPWHGAKSPYWIAATKGFPARSLLSIQRGKAQFEALFESPASSALEPPLHP*
Ga0066701_103498861	3300005552	Soil	PYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP*
Ga0066701_107154741	3300005552	Soil	QEGLLEGWGMALSEDELFSRSPWKGQESPLWMAATKGFSSRSLASVQRGKAQFEALFEGASPSALDLPRPAP*
Ga0066692_104892591	3300005555	Soil	LEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP*
Ga0066692_109265781	3300005555	Soil	IGELLFAHHRMTPFPPAELERFPAAYQEGLLEGWGMALSEVEHFSILPWKGHDNPFGAVWTRGLSARRLVSIQRGKAQFEALFESQAPSALEPPLRP*
Ga0066707_101709332	3300005556	Soil	VLAAELERFPHDYQEDLLQGWGMALGEDEVFSPDPWKGQESLVWMVATKGFSARSLVSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066698_107850541	3300005558	Soil	AELERFPQAYQEGLLEGWGMELAGEELFSPSLLTGHGSLLWLASTKGLSARSLAFVQQGKAQFEALFEGPAARALDPPLNQ*
Ga0066703_106816931	3300005568	Soil	PAELERFTQAYQQSLLEGWGMALGESELFSQLPWKGHDSPFWMAGTKGLSARGLVSIQQGKAQLEALFESQAPSALEPPLRP*
Ga0066702_106786381	3300005575	Soil	PPAELERFPQAYQEGLLEGWGMALGEEDLFSIFPWKGQESPYWTAWTKGLSARSLVSIQQGKAQFEALFKGPAPSALAPPLSP*
Ga0066702_109077661	3300005575	Soil	AELERFPQAYQEGLLEGWGMALGEDDLFSELPLHGQGSPLWMAATKGLSARSLVSIQQGKAQFDALFEGPAPSALAPPRHAR*
Ga0066656_102363742	3300006034	Soil	TANWLPPADLERFPHAYQPSLFEGWGMALGEVEVFSLLPWHGQASPLWMAATRGLTARSLVSIQRGRAQFDALFEGAAPSALEPARHTP*
Ga0066665_104297752	3300006796	Soil	EGWGMALGEDELFSPLPWKGHDSLSWMAATKGFSARSLVSIQQGKAQFDALFEGPAARALDPPLNQ*
Ga0066665_105611442	3300006796	Soil	ATDNWLAPAELERVPQAYQPSLLEGWGMALGDEELYSPLPRTGHESLLWLASTNGFSARSFVSIRQGKAQFEALFEEPASSELEPPRQAL*
Ga0066665_108335372	3300006796	Soil	ERFPHAYQDGLMEGWGMALGEDERFSPLPWHGQESLLWRAATKGFSARSLVSIQQGKAQFDTLFESPAARALEPPLNQ*
Ga0066659_101788172	3300006797	Soil	ELLFMHLSNAPWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ*
Ga0066660_100197561	3300006800	Soil	ELERLPQAYQEGLWEGWGMALGEEEFCSPLPWKGQQNLVWMAATKGLSARSLVSIQQGKAQFDALFEGPAPSALAPPRHAR*
Ga0066710_1001777263	3300009012	Grasslands Soil	LLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLVSIRQGKAQLEALFEGPAPRALERPVSQ
Ga0066710_1008295051	3300009012	Grasslands Soil	EFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0066710_1009939142	3300009012	Grasslands Soil	MEPLVPPAELERFPQAYQPSLLVGLGMALGEVELYSPFPLIGHETLLWMAATKGVSAISLASIQQGKAQFEALFEGPASSPLEPPQRP
Ga0066710_1048783292	3300009012	Grasslands Soil	GQVLFASLSADDWDLAAELERFPHAYQDGLMEGWGMALGEDALFPPYPWEGHERLLWRAATKGFSARSLVSIRQGKAQFEALFEGPATHALAPPLRP
Ga0099829_114816661	3300009038	Vadose Zone Soil	QGVGELLFHHFSGIPWVQAAELERFPHAYQESLLEGWGMALGELEFFSLLPWTGHESLSWMAATKGFSARSLVSIQRGKAQFEALFEEPAPSELEPPLRQ*
Ga0099828_117507312	3300009089	Vadose Zone Soil	LERFSHVYQEGLLEGWGMALGERDYFSPFPRQGSESLYWMASTKVFSPRSLVSIQQGKAQFDALFEGPAPSALQPPLSR*
Ga0066709_1039445471	3300009137	Grasslands Soil	HAYQEGLLEGWGMALGEVEHFSILPWKGHDNPFSAVWTRGLSARSLVSVQQGKAQFDTLFEGPASSALKPTRSP*
Ga0134082_100922882	3300010303	Grasslands Soil	EGLGVEIGEFELFSGLPSTDHESLLWMASTKGFSARSLASMQQGKAQFDALFEGPASGALEPSRNAR*
Ga0134071_101600521	3300010336	Grasslands Soil	LFEGWGMALGEDELFSPLPWKGHDSLSWMAATKGFSARSLVSIQQGKAQFDALFEGPASRAVQPLRQAP*
Ga0134071_105235642	3300010336	Grasslands Soil	SDWVRPAELERFPPAYQESLLEGWGMALGEDELFSLYSWKGEDSPVWMAATKGFSTKSLVSVQRGKAQFEALFEGPASRSLEPPPRQ*
Ga0137388_107738142	3300012189	Vadose Zone Soil	MTPWVLAAELERFSDAYQEGLLEGWGMILGEDGLFVPLPWKAHESPSWTAWKKGFSARSLVSIQRGKAQFETLFEGAAPSALDAPLSH*
Ga0137380_104607812	3300012206	Vadose Zone Soil	VPPAYQPSLLEGWGMALGEDEIYSLFPGKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137386_100678531	3300012351	Vadose Zone Soil	ELLFDNRFIDSQWVVPAELERVPPAYQEGLLEGWGMALGEDEIYSLFPWKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137367_111566052	3300012353	Vadose Zone Soil	GELLFDNRFIDSQWVVPAELERVPPAYQPSLLEGWGMALGEDEIYSLFPWKGQESPYWTVWTKGFSAKGLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137373_103203152	3300012532	Vadose Zone Soil	MALGEDEIYSLFPGKGQESPYWTVWTKGFSAKSLVSIREGKAQFEALFEGPAPSAVEPPRSQ*
Ga0137397_111909871	3300012685	Vadose Zone Soil	QGVGELLFDYLKYTPWIPLAELARLPHAYQEGFLEGWGMALGEYDLLSRIPWHGRASPYWTAWTKGLSARSLMAVQQGMAQFEALFTGPAPSALKPPLRR*
Ga0137416_117782162	3300012927	Vadose Zone Soil	PAELERVLPAYQEGLLEGWGMALGEDELFSLLPSTGQESVSWIAATKGFSPSSLVSIQRGKAQFEALFEGAAASTLKSPLSP*
Ga0137416_118770761	3300012927	Vadose Zone Soil	QEGPLEGWGMDLGEVELFSQLSWKGDDSPYWMALTKGLSPRSLVSIQQGKSQFDALFARPPSSALDPPLSQ*
Ga0134077_103117991	3300012972	Grasslands Soil	LFATLSADDWVLAAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0134075_101858563	3300014154	Grasslands Soil	YQESLLEGWGIQLCKDDLFSPFPWKGHDSPFWTAWTKGLSARSLVSIEQGRAQFEALFEEPTSRALKPPRQAP*
Ga0134075_101933541	3300014154	Grasslands Soil	YQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ*
Ga0134075_104025311	3300014154	Grasslands Soil	PFRPAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP*
Ga0134089_100255273	3300015358	Grasslands Soil	MHLRNTPWVVPGEVERFPHAYQEGLLEGWGMALGEDKVFSLYPWKGEDSPVWRAARKGFSARSLVSVQHGMAQFETLFEGPASSAPEPPRSR*
Ga0134089_102862262	3300015358	Grasslands Soil	GLLEGWGMALGEAGVFSLYPWKGKDSPVWMVSTKGFSTRSLVSIQQGKAQFEALFEGPASKSLVPSPRP*
Ga0134089_105267622	3300015358	Grasslands Soil	VLPAELERFPQVYQEGLMEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFKGPAPSALQPPVSQ*
Ga0134112_103363542	3300017656	Grasslands Soil	RPAELERFPHAYQESLLEGWGMALGEDERFSRLPWKGQESLFWRASTKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP
Ga0184634_105044762	3300018031	Groundwater Sediment	PGVAPAELERFPQAYQEGLLEGWGTAQGEFELSPVLPWLGPESPYWAAWTKGFSARSLVSIQRGKAQFEALFEGPPSSAPEPPRRP
Ga0184640_100787193	3300018074	Groundwater Sediment	WGMALGEAELFSPFPWKHQASPFWMAATKGVSAKSLVFVQQGMAQFAALFEGPAISALEPPRQAP
Ga0184639_102142782	3300018082	Groundwater Sediment	FAHLMYTPWVLAAELERFPQAYQEGLLEGWGMALGEFDHFSAFPWHGHESPFWTAWTKGFSARSLVSIQQGEAQFDALFEGAASSAPGPPRRP
Ga0066655_106092591	3300018431	Grasslands Soil	LGEDALFSQYPWEGHERLLWRAATKGFSARSLASIRRGKAQFEALFEGPAPRALERPVSQ
Ga0066662_105980152	3300018468	Grasslands Soil	PAELERFPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0066662_108809622	3300018468	Grasslands Soil	FPPAYQEDLFEGWGVAQGEFELAPVFPWLGPDSPYWASLMKGFSARSLASVQQGKAQFEALFERAAPSALKPPLHP
Ga0066662_110058702	3300018468	Grasslands Soil	SFDNWVLDAELEHFPYAYQEGLLQGWGMALGEDALFSLYPWEGHERLLWRAATKGFSARSLMSIRQGKAQFDALFEGAAERALEPPFNER
Ga0187893_101476131	3300019487	Microbial Mat On Rocks	IDTPRVSATELERFSHDYQRGLLEGWGMALGEFDYYSNFLGHGPESPLWEASTKGLSARSLASVEQGKAQFAALFDGPAASAMKPPPHAR
Ga0209235_10962061	3300026296	Grasslands Soil	DEVFSPAPWKGQESLVWMVATKGFSARSLLSIRQGKAQFEALFEGLAAIAQEPPRNQ
Ga0209235_12606882	3300026296	Grasslands Soil	FLITSHWVPPAELERFPPAYQEGLLEGWGMALGEDEHFSLFPWKGHDSPFWMAGTKGFSARSLASIQRGKAQFEALFEGPAPSALELPVSQ
Ga0209237_10905941	3300026297	Grasslands Soil	AELERFPPAYQEGLLEGWGMALGEYELLSPLPWKGHDSPLWMAATKGFSARSLVSIRQGKAQFDALFEGLAPRALEHPLSQ
Ga0209236_10146453	3300026298	Grasslands Soil	GEELFSPSLLTGHESLLWLASTKGLSARSLAFVQQGKAQFEALFEGPAARALDPPLNQ
Ga0209236_10531783	3300026298	Grasslands Soil	QEDLLEGWGMALGEDELFSPYPWKGQESLSWMTATKGFSARSLVSIQQGKAQFEAFFESPAARALEPPLRP
Ga0209236_11124831	3300026298	Grasslands Soil	QELFSGMPWHGHESPLWIAATKGLSARSLVAIQEGKAQFEALFEGPDPTALEPSLRQ
Ga0209236_11370402	3300026298	Grasslands Soil	GWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0209055_11760241	3300026309	Soil	PWVLPAELERFPQVYQEGLMEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0209055_12005381	3300026309	Soil	ELERFPPAYQEGLLEGWGMALGEDALFSPYPWEGHEKLLWRAATKGFTARSLVSIQQGKAQFEALFKGAAARALEPPLNER
Ga0209802_10355373	3300026328	Soil	SLSADDWGLAAELERFPHPYQEGLLEGWGMALGEDELFSPLPWKGHDSPFWMTVTKGLSARSLMAIQRGKAQFEALFESPAPSALEPRLLQ
Ga0209802_10715132	3300026328	Soil	EGLLEGWGFALSERELFSPLPWNGQESLLWRAATKGFSARSRASIQRGKAQFEALFEGPTPSAVEPPLNQ
Ga0209802_12644942	3300026328	Soil	LERFPQVYQEGLLEGWGMGLGEFELFPPSPWHGAKSPYWIAATKGFSARSLVSIQQGKAQFEALFEGPDPTALEPSLRQ
Ga0209803_13485442	3300026332	Soil	GFALSERELFSPLPWNGQESLLWRAATKGFSARSLVSVQQGKAQFDTLFEGPASSALGPPPRR
Ga0209158_13443682	3300026333	Soil	FSLYPWKGKDSPVWMVSTKGFSTRSLVSIQQGKAQFEALFEGPAASALEPPRQAQ
Ga0209377_10325932	3300026334	Soil	MALGEDERFSPYPSKGQESLSWMAATKGFSARSLVSIQQGKAQFEALFESPATRALEPPLRP
Ga0209377_11560671	3300026334	Soil	LGEVELYSPFPLTGHETFSWKAATKGFSVRSLVFIQQGKAQFEALFEGTAPSALKPLLSQ
Ga0209690_10889352	3300026524	Soil	YQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Ga0209690_13079901	3300026524	Soil	QGVGELLFMHLSNTPWVLPAELERFPHAYQEGLLEGWGMELGEFELVSRFPWHGQESPLWVASTKGFSARSLVTIQQGKAQFDTLFEGPAARALEPPPRP
Ga0209378_12084651	3300026528	Soil	LFIHLLNTPWVPPAELERFPHAYQEGLLEGWGMALGEVEHFSILPWKGHDNPFSAVWTRGLSARSLVSVQQGKAQFDTLFEGPASSALKPTRSP
Ga0209157_11782542	3300026537	Soil	FPQVYQEGLLEGWGMALGEDERFSPYPSKGQESLFWIASTKGFSARSLVSIQQGKAQFEALFEGPAARALEPPLRP
Ga0209056_101090651	3300026538	Soil	NWVPPAELERFPRAYQQGLLEGWGMALGEDELFSPVPWKGQESPLWIAKTKGLSAMSLSYIQQGKAQFEALFESPDPTALEVPLSQ
Ga0209161_100814551	3300026548	Soil	PWVLPAELERFPQVYQEGLLEGWGMELGEFELVSRFPSHGQESPLWVASTKGFSARSLMSIRQGKAQFEALFEGPAPSALQPPVSQ
Ga0209689_11949342	3300027748	Soil	TLSADDWVLAAELERFPPAYQEGLLEGWGMALGEDALFPQYPWEGHERLLWRAATKGFSARSLVSIRQGKAQLEALFEGPAPRALERPVSQ
Ga0137415_103188081	3300028536	Vadose Zone Soil	NHWVAPAELERVPPAYQEGLLEGWGMALGEFDHFSDFPWHGQGSPFWAAWTKGLSAGGLVSVEQGKAQFEALFEGADSSAPEPPRQAP
Ga0364942_0023145_2_286	3300034165	Sediment	LFTYPFTSYWVPPAELERFPPAYQEGLLEGWGMALGEFELFSGLPWKGPESPFGTAWTKGLSARSLVSVQQGKAQFKALFEGPASNALAPPLSP
Ga0364932_0185476_207_410	3300034177	Sediment	MEGWGMALGEYEFFSKLPRKGHESPLWMAATKGLSARSLVSIQRGRAQFKALFEGPALSAPGPPLHP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters