Metagenome / Metatranscriptome Family F095218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095218
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	67 residues
Representative Sequence	MRFRTSLCLATLFLVCFTIAAWSTPLPAQPAADSLQPTPDNQSLSGQIASVGDAEFSVQVTKDKDVNTVQFL
Number of Associated Samples	80
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	3.81 %
% of genes from short scaffolds (< 2000 bps)	3.81 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (95.238 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (44.762 % of family members)
Environment Ontology (ENVO)	Unclassified (38.095 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.619 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106. 1INPhiseqgaiiFebDRAFT_1015460561 2INPhiseqgaiiFebDRAFT_1015463531 3JGI1027J11758_128956331 4JGI25385J37094_101671671 5JGI25390J43892_100331142 6JGI25617J43924_103129701 7JGI25389J43894_10802611 8Ga0066683_108833801 9Ga0066690_104468021 10Ga0066699_101198271 11Ga0066703_102287312 12Ga0066703_105642701 13Ga0066705_101521842 14Ga0066705_105134371 15Ga0066696_102236032 16Ga0066696_104296952 17Ga0066665_104567431 18Ga0066659_101279861 19Ga0066659_101359871 20Ga0099791_101194671 21Ga0099791_105771552 22Ga0099791_105887461 23Ga0099793_101522332 24Ga0099793_104114142 25Ga0099794_101091851 26Ga0099794_103098042 27Ga0099794_103992021 28Ga0099828_101997131 29Ga0066709_1045264201 30Ga0134082_101991732 31Ga0134109_102244062 32Ga0134064_100936823 33Ga0134066_100494471 34Ga0137389_100531701 35Ga0137388_104940682 36Ga0137383_109239441 37Ga0137382_102689512 38Ga0137363_110179292 39Ga0137363_110443841 40Ga0137363_112543991 41Ga0137363_117427181 42Ga0137399_103403141 43Ga0137399_110124031 44Ga0137362_106014612 45Ga0137378_111308131 46Ga0137377_110556132 47Ga0137377_118960122 48Ga0137370_101337871 49Ga0137371_111303952 50Ga0137360_110271731 51Ga0137390_105218381 52Ga0137397_104817391 53Ga0137396_105004352 54Ga0137394_101283083 55Ga0137394_106351492 56Ga0137394_107682632 57Ga0137359_102062791 58Ga0137359_112907301 59Ga0137416_105616322 60Ga0137416_116812021 61Ga0137416_121750911 62Ga0137404_119208571 63Ga0134087_101803852 64Ga0137409_101708853 65Ga0137409_103624102 66Ga0137403_104396562 67Ga0066655_113982281 68Ga0066667_121573591 69Ga0066669_115572142 70Ga0137408_14390957 71Ga0210407_105522572 72Ga0210399_104097892 73Ga0210401_100790531 74Ga0210404_102905371 75Ga0210400_111621931 76Ga0210410_114306962 77Ga0210409_113053352 78Ga0242665_102859911 79Ga0137417_11076712 80Ga0209027_12116152 81Ga0209238_11643731 82Ga0209471_10914631 83Ga0209804_12160711 84Ga0257171_10170951 85Ga0209806_11800661 86Ga0209056_100281531 87Ga0209056_102785792 88Ga0209648_100815404 89Ga0209220_11887941 90Ga0209117_11817191 91Ga0209388_10432541 92Ga0209009_10310401 93Ga0209588_12283431 94Ga0209626_11836111 95Ga0209701_100642071 96Ga0137415_108331291 97Ga0222749_105004861 98Ga0307469_105903352 99Ga0307469_106434672 100Ga0307468_1014612122 101Ga0307477_110006212 102Ga0307475_104895362 103Ga0307471_1000584511 104Ga0307471_1027123862 105Ga0307471_1027280481
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106. 1INPhiseqgaiiFebDRAFT_1015460561 2INPhiseqgaiiFebDRAFT_1015463531 3JGI25385J37094_101671671 4JGI25617J43924_103129701 5JGI25389J43894_10802611 6Ga0066683_108833801 7Ga0066690_104468021 8Ga0066705_101521842 9Ga0066705_105134371 10Ga0066665_104567431 11Ga0066659_101279861 12Ga0099791_105771552 13Ga0099791_105887461 14Ga0099793_104114142 15Ga0134064_100936823 16Ga0134066_100494471 17Ga0137363_110179292 18Ga0137396_105004352 19Ga0137416_105616322 20Ga0137408_14390957 21Ga0210399_104097892 22Ga0210401_100790531 23Ga0210410_114306962 24Ga0242665_102859911 25Ga0209220_11887941 26Ga0222749_105004861 27Ga0307469_105903352 28Ga0307477_110006212 29Ga0307475_104895362
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0137416_116812021 2INPhiseqgaiiFebDRAFT_1015460561 3INPhiseqgaiiFebDRAFT_1015463531 4JGI25385J37094_101671671 5JGI25389J43894_10802611 6Ga0066699_101198271 7Ga0099791_105771552 8Ga0137363_110179292 9Ga0137363_117427181 10Ga0137399_103403141 11Ga0137371_111303952 12Ga0137360_110271731 13Ga0137416_105616322 14Ga0066655_113982281 15Ga0066669_115572142 16Ga0210399_104097892 17Ga0242665_102859911 18Ga0209056_102785792 19Ga0209648_100815404 20Ga0209220_11887941 21Ga0209009_10310401 22Ga0209588_12283431 23Ga0209701_100642071 24Ga0222749_105004861 25Ga0307468_1014612122 26Ga0307477_110006212 27Ga0307475_104895362 28Ga0307471_1000584511
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.00% β-sheet: 21.00% Coil/Unstructured: 58.00%
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02620	YceD	11.43
PF06271	RDD	10.48
PF13432	TPR_16	2.86
PF03747	ADP_ribosyl_GH	2.86
PF13620	CarboxypepD_reg	1.90
PF13248	zf-ribbon_3	1.90
PF01522	Polysacc_deac_1	0.95
PF00106	adh_short	0.95
PF14294	DUF4372	0.95
PF03544	TonB_C	0.95

Showing 1 to 10 of 15 entries

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COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1399	23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria)	Translation, ribosomal structure and biogenesis [J]	11.43
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	10.48
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	2.86
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.95
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.95
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.95
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	4.76 %
Unclassified	root	N/A	95.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	4.76 %
Unclassified	root	N/A	95.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.76 %
Unclassified	root	N/A	95.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.86 %
Unclassified	root	N/A	95.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Unclassified	root	N/A	95.24 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007265\|Ga0099794_10399202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300009089\|Ga0099828_10199713	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300012923\|Ga0137359_10206279	Not Available	1755	Open in IMG/M
3300020583\|Ga0210401_10079053	All Organisms → cellular organisms → Bacteria → Acidobacteria	3095	Open in IMG/M
3300026538\|Ga0209056_10278579	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300026551\|Ga0209648_10081540	All Organisms → cellular organisms → Bacteria → Acidobacteria	2699	Open in IMG/M

Showing 1 to 6 of 6 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	3.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.19%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.52%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	44.76%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M

Showing 1 to 10 of 80 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015460561	3300000364	Soil	MRFRTSMVLATLFVACFTIAAWSTPPTVRPSPRPLLPTPDTQSLSGKIASVGDAEFSVQVTKGQDVNTVQFLVDDKTKVEGKLAVGAQA
INPhiseqgaiiFebDRAFT_1015463531	3300000364	Soil	MRFRTSMFLITMFVACCTIAAWSTPLTADTQSLSGRIATIGDGEFSVQVTKDQDVKTVQFLVDDKTKVEGKLAVGA
JGI1027J11758_128956331	3300000789	Soil	MRFRTSMVLATLFVACFTIAAWSTPPTVRPSPRPLLPTPDTQSLSGKIASVGDAEFSVQVTKGQDVNTVQFLVDDKTKVEGKLAVG
JGI25385J37094_101671671	3300002558	Grasslands Soil	MRFRTSMCLATLFLFCFTIAAWSAPHLILAAGHTEPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVKFMVDDKT
JGI25390J43892_100331142	3300002911	Grasslands Soil	MRFRTSLCLATLFLVCFTIAAWSTALPAQPAADNLQPTPDNQSLSGQIASVGDAEFSVQVTKDKNVNTVQFLVDGKTKVEGKLAVGAE
JGI25617J43924_103129701	3300002914	Grasslands Soil	MCLTTLFLVCFTIAAWSTPPPAQPAAGHPQSTPDNQSLSGQITSVGDAEFSLQVAKNKEASTVHFQVDDKTKVXGKLAVGAQASV
JGI25389J43894_10802611	3300002916	Grasslands Soil	MRFRTSLXLATLVLVSFTMGAWCTPLPAHSAAINLQPTPDKQSLSRQMAPGRSRILRTVRKDQGVNTVQFLVGGKTKIQGK
Ga0066683_108833801	3300005172	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFLVDGKT
Ga0066690_104468021	3300005177	Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQIASVGD
Ga0066699_101198271	3300005561	Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQIASVGDREFSVQVKKDQGVNTVPFLVD
Ga0066703_102287312	3300005568	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQF
Ga0066703_105642701	3300005568	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQF
Ga0066705_101521842	3300005569	Soil	MRFRASLCLATLFLVCFTIAAWSTPPAAHPAAGPLEPTPDNQSLSGQITSVGDAEFSVQVAK
Ga0066705_105134371	3300005569	Soil	MRFRTSLRLATLFVVCFTMAAWYTPLPVHSAAVNLQPIPHKQSLSRQ
Ga0066696_102236032	3300006032	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSGPIASV
Ga0066696_104296952	3300006032	Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQIASVGDREFSVQVKK
Ga0066665_104567431	3300006796	Soil	MRFRTWLCRATLFLVCFTIAAWSAPLPAQPAADSRQPALDNQALPGQIASVGGAEFSVPVKRTKM*
Ga0066659_101279861	3300006797	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIA
Ga0066659_101359871	3300006797	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFL
Ga0099791_101194671	3300007255	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPHPILAAGHAQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVRFMVDDKTKVEGKLAVGAQATVEYR
Ga0099791_105771552	3300007255	Vadose Zone Soil	VFVVCFTIAAWSAPLPSVPEADHLSPTPDNQSVSGTVAAIGDAEFSLQVTKNQEVNTVQFLVDDKTKVEGKLAVG
Ga0099791_105887461	3300007255	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPLPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTV
Ga0099793_101522332	3300007258	Vadose Zone Soil	MRFRNSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSV
Ga0099793_104114142	3300007258	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPLPALPVADHGSPGPDNQSLSG
Ga0099794_101091851	3300007265	Vadose Zone Soil	MLFLFFFTITAWSTPHPILAAGCSEPTPDNQSLSGQITSVGDAEFSVQVAKNKDSS
Ga0099794_103098042	3300007265	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPHPILAAGHAQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTV
Ga0099794_103992021	3300007265	Vadose Zone Soil	MCLATLFLCCLTIAAWSTPLPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQFM
Ga0099828_101997131	3300009089	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTEADSLQPAPDNQSLSGPIAS
Ga0066709_1045264201	3300009137	Grasslands Soil	MRFRAPLCLATLFLVCFTIAAWSTPPAAHPAAGPLEPTPDNQSLSGQITSVGDAEFSVQVAKNKDASTVQFL
Ga0134082_101991732	3300010303	Grasslands Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSGPIASVGDAEFS
Ga0134109_102244062	3300010320	Grasslands Soil	MRFRGSLCLATLFLVCFTIAAWSTPPAAHSAAGPLKPTPDNQSLSGQITSIG
Ga0134064_100936823	3300010325	Grasslands Soil	MRFRTSLCLATLFLVCFTMAAWSTPLPDQQSLWGQIASVGDREFS
Ga0134066_100494471	3300010364	Grasslands Soil	MRFRTSLCLATLFLVCFTMAAWCTPLPAHSAAVNLQPTPDKQSLSRQMASVGDREFSVQVRKDQGVNTVQ
Ga0137389_100531701	3300012096	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTVADSLQPTPDNQSLSGP
Ga0137388_104940682	3300012189	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPLPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQFMVDDKTKVEGKLAVG
Ga0137383_109239441	3300012199	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFL
Ga0137382_102689512	3300012200	Vadose Zone Soil	MRFRASLCLATLFFVCFTIAAWSTPPAAQPAAGRLDPTPDNQSLSGQITSIGDAEFSVQVAKNKDASTVQFLV
Ga0137363_110179292	3300012202	Vadose Zone Soil	MCLVTLFVVCFTIAAWSTPLRALPPAGYARPTPDSQSLSGTIASVGDAEFSVQAAKDKDA
Ga0137363_110443841	3300012202	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPHPILAAGHAQPIPDNQSLSGQITSVGDAEFSVQVAKNKDISTVRFMVD
Ga0137363_112543991	3300012202	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPHPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQ
Ga0137363_117427181	3300012202	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPLPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQFMVDDK
Ga0137399_103403141	3300012203	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPPPALPGADHLSPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQFM
Ga0137399_110124031	3300012203	Vadose Zone Soil	MRFRTSLCLATLFLFCFTIAAWSAPHLILAAGHTEPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTV
Ga0137362_106014612	3300012205	Vadose Zone Soil	MCLATLFLFCLTIAAWSTPHPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTV
Ga0137378_111308131	3300012210	Vadose Zone Soil	MRFRASLCLATLFLVCFTIASWSTPPAAQPAAGPLEPTPDNHSLSGQIASVGDAEFSVQVAKNKDASTVQFLVDDKT
Ga0137377_110556132	3300012211	Vadose Zone Soil	MRFRTSLCLATLFLVCFTMAAWSTPLPAETAADSLQPAPDNQSLSGPIASVG
Ga0137377_118960122	3300012211	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSG
Ga0137370_101337871	3300012285	Vadose Zone Soil	MRFRASLCLATLFLVCFTIAAWSTPPAAQPAAGPLEPRPDNQSLSGQITSIGDAEFSVQVAKNKDA
Ga0137371_111303952	3300012356	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAGRSTPLLAETAADSLQPAPDNQSLSGPIASVGDAEFSVQV
Ga0137360_110271731	3300012361	Vadose Zone Soil	MFLATLFLVCFTIAAWSTPPTVQPAAGPLLPTPDTQSLSGKIASVGDAEFSVQMTKDQDVNTVQFLVDDKTKVEGKLAVGAQATV
Ga0137390_105218381	3300012363	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPPPALPGADHLSPTPDNQSLSGQITSVGDAEFS
Ga0137397_104817391	3300012685	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPHPILAAGHSEPTPDNQSLSGQITAVGDAEFSVQVAKNKDISTVQFMVDDQTKVEGKL
Ga0137396_105004352	3300012918	Vadose Zone Soil	MRFRASLVLATLFVVCFTIAAWSAPYPILAAGHSEPTPDNQSLSGQITSVGDA
Ga0137394_101283083	3300012922	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPHPILAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKD
Ga0137394_106351492	3300012922	Vadose Zone Soil	VFVVCFTIAAWSAPLPALPVVDHVSPGPDNQSLSGTVASVGDAEFSLQVAKNQDVNTVQFMVDDKTKVEGKLAVGAQATVEYR
Ga0137394_107682632	3300012922	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPHPILAAGHSQPTPDNQSLSGQITSV
Ga0137359_102062791	3300012923	Vadose Zone Soil	MRFRTSMCLATLFLFCLMIAAWSTPLPTLAAGHSQPTPDNQSLSGQITSVG
Ga0137359_112907301	3300012923	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSAPLPAQTAADSLQPAPDNQSLSGPIASV
Ga0137416_105616322	3300012927	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPLPALPVADHGSPGPDNQSLSGTVASVGDAEFSLQVAKNQDVNTVQFMVD
Ga0137416_116812021	3300012927	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQPAADSLQPTPDNQSLSGQIASVGDAEFSVQVTKDKDVNTVQFL
Ga0137416_121750911	3300012927	Vadose Zone Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFLVD
Ga0137404_119208571	3300012929	Vadose Zone Soil	MCLATLFLFCFTIAAWSAPHLILAAGHTEPTPDNQSLSGQITSVGDAEFSVQVTKNKDISTVQFMVD
Ga0134087_101803852	3300012977	Grasslands Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQ
Ga0137409_101708853	3300015245	Vadose Zone Soil	MRFRTSMCLATLFLFCFTIAAWSTPHPILAAGHAQPTPDNQSLSGQITSVGDAEFSVQV
Ga0137409_103624102	3300015245	Vadose Zone Soil	MRFRTSLCLATLFLFCLTIAAWSKPYPTLAAGHSQPTPDNQSLSGQITSVGDAEFSVQV
Ga0137403_104396562	3300015264	Vadose Zone Soil	MRFRTSMCLATLFLFCLTIAAWSTPLPTLAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKD
Ga0066655_113982281	3300018431	Grasslands Soil	MRFRASLCLATLFLVCFTIAAWSTPPAAHPAAGPLEPTPDNQSLSGQITSVGDAEFSVQVAKNKDASTVQFLA
Ga0066667_121573591	3300018433	Grasslands Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQV
Ga0066669_115572142	3300018482	Grasslands Soil	MRFRTSLCLATLFVVCFTIAAWCTPLPAQSAAVNLQPTPDKQSLSRQMASVGDREFSVQVRKDQGVNTVQFLVDGQTK
Ga0137408_14390957	3300019789	Vadose Zone Soil	MCLAPLFLFIFTIGAWSTPHPTLAAGHSQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVQFMVMTRRKSKGKLAVGAQATGRVPFERKAKTSPFTSS
Ga0210407_105522572	3300020579	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTVADSLQPTPDNQSLSGPIASVGDAEFSVQVKKDKDVNTV
Ga0210399_104097892	3300020581	Soil	MRFRTSLCLATLFLAFFTIAAWSTPLPARPAADRLQPAPDNQSLSGQILSVGDAEFSLQVKKNQDVNTVQFLVDDKTTVEGKLSVGARATV
Ga0210401_100790531	3300020583	Soil	MRFRASMFLATLFVACFTIAAWSTPLPAQPAAGDPQPIPDNQSLSGTIAAIGDAEFSVQVAKDK
Ga0210404_102905371	3300021088	Soil	MRFRTSLCLATLFLAFFTIAAWSTPLPARPAADRLQPAPDNQSLSGQILSVGDA
Ga0210400_111621931	3300021170	Soil	MRFRTSLCLATLFLAFFTIAAWSTPLPARPAADRLQPAPDNQSLSGQILSVGDAEFSLQVKKNQDVNTVQFLVDDKTTVEGKLSVGARATVE
Ga0210410_114306962	3300021479	Soil	MRFRTSLCLATLFLAFFTIAAWSTPLTARPAADRLQPAPDNQSLSGQILSVGDAEFSLQVKKNQDVNTV
Ga0210409_113053352	3300021559	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTVADSLQPTPDNQSLSGPIASVGDAEFSVQVKKDKDVNTVQ
Ga0242665_102859911	3300022724	Soil	IAAWSTPLRALPAAGDARATPDSQSSSGTIASVGDAEFSVQVAKNKDESAVQFVVDDKTKVEGKLTVGARATVE
Ga0137417_11076712	3300024330	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPPPALPGADHLSPTPDNQSLSGQI
Ga0209027_12116152	3300026300	Grasslands Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFLVDGK
Ga0209238_11643731	3300026301	Grasslands Soil	MRFRGSLCLATLFLVCFTIAAWSTPPAAHSAAGPLKPTPDNPSLSGQITSIGDAEFSVQVAKNKDASTVQF
Ga0209471_10914631	3300026318	Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAETAADSLQPAPDNQSLSGPIASVGDAEFSVQVTKDKDVNTVQFLVDGKTKVEGKLAVGAQ
Ga0209804_12160711	3300026335	Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQIASVGDRE
Ga0257171_10170951	3300026377	Soil	MRFRTSMCLATLFLFCLTIAAWSTPHPILAAGHAQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVKFMVDDKTKVEGKL
Ga0209806_11800661	3300026529	Soil	MRFRTSMCLATLFLFCFTIAAWSAPHLILAAGHTEPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVKFMVDDKTKVE
Ga0209056_100281531	3300026538	Soil	MRFRTSLCLATLFLVCFTMAAWSTLLPAPSAAINEQPTPDQQSLWGQIASVGDREFSVQVKKDQGVNTVPFLVDGQTKVE
Ga0209056_102785792	3300026538	Soil	MRFRTWLCRATLFLVCFTIAAWSAPLPAQPAADSRQPALDNQALPGQIASVGGAEFSVPVKRTKM
Ga0209648_100815404	3300026551	Grasslands Soil	VRFRTPMCLTTLFLVCFTIAAWSTPPPAQPAAGHPQSTPDNQSLSGQITSVGDAEFSLQVAKNKEASTVHFQVDDKTKV
Ga0209220_11887941	3300027587	Forest Soil	MRFRASLLVILFLFCITTAAWSAPLPIQAVNHSQPTPDNQSLSGQITAVSAAQFSVQVAKNKDASIVQFV
Ga0209117_11817191	3300027645	Forest Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTAADSLQPAPDNQSLSGPIASVGDAEFSVRV
Ga0209388_10432541	3300027655	Vadose Zone Soil	MRFRTSMCLATLFLFCLTIAAWSTPHPILAAGHAQPTPDNQSLSGQITSVGDAEFSVQVAKNKDISTVR
Ga0209009_10310401	3300027667	Forest Soil	MRFRISLCLATLFLVCFTVAAWSTPLPARTVADSLQPTPDNQSLSGPIASVADAEFSIQVTKDKDVNTVQFLVDGILKSIHAHGESI
Ga0209588_12283431	3300027671	Vadose Zone Soil	MRFRTSLCLATLFLFCFTIAAWSTPYPILAAGHSLPTAENQSLSGQITSVGDAEFSVQV
Ga0209626_11836111	3300027684	Forest Soil	MRFRTSLCLATLFLVCFTIAAWSTPLPAQTVADSLQPTPDNQSLSGPIASVG
Ga0209701_100642071	3300027862	Vadose Zone Soil	MRFRTSLCLATLFLFFFTITAWSTPHPILAAGYSEPTPDNQSLSGQITSVGDAEFSVQVA
Ga0137415_108331291	3300028536	Vadose Zone Soil	MRFRTSLVLATLFVVCFTIAAWSAPPPALPGADHLSPTPDNQSLSGQITSVGDAEFSV
Ga0222749_105004861	3300029636	Soil	MRFRASMFLATLFVACFTIAAWSTPLPAQPVAGDPQPIPDNQSLSGTIAAIGDAEFSVQVAKDKDVSTVQFLVDDKTKVEGKLTVGAQAT
Ga0307469_105903352	3300031720	Hardwood Forest Soil	SLCLATLFLVCFTMAAWSTPLPAQSAAVNLQPTPDKQSLWGPIASAGDREFSVPIALGVFVTLE
Ga0307469_106434672	3300031720	Hardwood Forest Soil	MRFWASLLVTLFLFCITTAAWSAPLPILAMSHSQPTPDNQSLSGQITAVSAAQFSVQVAKNKDASIVQF
Ga0307468_1014612122	3300031740	Hardwood Forest Soil	MRFRTSLFLATAFLFCFTIAAWSTPLPILAAGPSQPTPDNQSLSGQIISVGDAEFSVQVAKNKDVSTVQFMVD
Ga0307477_110006212	3300031753	Hardwood Forest Soil	MRFLASMLLVTLFVACFTIAAWSTSLTAQLATGALQPTADNQSLSGQITSIGDAEFSVQVAKNKDVN
Ga0307475_104895362	3300031754	Hardwood Forest Soil	MRFRTALCLATLFLVCFTVAAWSTPRSAQLLDYPRPTPDNQSLSGKIASVGDATFSVEVTKNQEVSTIEFLIDGDT
Ga0307471_1000584511	3300032180	Hardwood Forest Soil	MRFRTSLRLATLFLVCFTMAAWSTPLPAQSAAVNLQPTPDKQSLWGPIASAGDREFSVPIALGVFVTLE
Ga0307471_1027123862	3300032180	Hardwood Forest Soil	MRFRASLCLATLFLVCFTIAAWSTPPAAHPAAGPLEPTPDNQSLSGQITSVGDAEFSVQ
Ga0307471_1027280481	3300032180	Hardwood Forest Soil	MRFRTSLCLATLFLFCLTIAAWSTPHPILAAGHSQPTPDNQSLSGQITSV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters