Metagenome Family F095194

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095194
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	67 residues
Representative Sequence	MDYKDISERIALLTQEIRDLQRMNEPYSMHSDGSHRTDRASHEQRELRLKQIKEELSRMMPKPIQREQ
Number of Associated Samples	80
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.42 %
% of genes near scaffold ends (potentially truncated)	39.05 %
% of genes from short scaffolds (< 2000 bps)	87.62 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (94.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.571 % of family members)
Environment Ontology (ENVO)	Unclassified (43.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.619 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96. 1JGI25388J43891_10759032 2JGI25386J43895_101753742 3Ga0066672_100414492 4Ga0066683_101239561 5Ga0066680_104512891 6Ga0066673_105335641 7Ga0066679_109481743 8Ga0066688_101875302 9Ga0066684_109990681 10Ga0066685_107352752 11Ga0066678_111077871 12Ga0070708_1000097518 13Ga0066682_106055162 14Ga0066681_103393663 15Ga0066681_105745803 16Ga0066681_108492471 17Ga0066687_101195312 18Ga0070698_1015447561 19Ga0070697_1002550972 20Ga0070697_1006965642 21Ga0066695_102179562 22Ga0066661_101853572 23Ga0066661_102203741 24Ga0066661_104129542 25Ga0066707_110100122 26Ga0066704_102886062 27Ga0066700_1002150410 28Ga0066699_107330531 29Ga0066703_104663093 30Ga0066705_107318381 31Ga0066708_105570483 32Ga0066651_107528082 33Ga0066652_1018810342 34Ga0066659_110447042 35Ga0066660_112470391 36Ga0066710_1001425813 37Ga0066710_1001695843 38Ga0066710_1025083891 39Ga0066710_1032484261 40Ga0099827_102464411 41Ga0066709_1028337861 42Ga0066709_1029042071 43Ga0134109_104038531 44Ga0137383_102419511 45Ga0137382_102045612 46Ga0137382_107835601 47Ga0137382_110189031 48Ga0137365_102250182 49Ga0137381_100177871 50Ga0137381_102015924 51Ga0137376_102878824 52Ga0137376_106575052 53Ga0137379_107594672 54Ga0137378_107101782 55Ga0137377_103203463 56Ga0137386_101655551 57Ga0137366_110760881 58Ga0137397_110453741 59Ga0137395_101963844 60Ga0137395_102455661 61Ga0137396_113141101 62Ga0137419_113286842 63Ga0137404_111696431 64Ga0137407_108333191 65Ga0137407_115249252 66Ga0137407_117978761 67Ga0134079_106949242 68Ga0137403_101065273 69Ga0184605_1000271810 70Ga0184605_100603601 71Ga0184605_101089571 72Ga0184605_101444872 73Ga0184605_104295803 74Ga0184621_102588812 75Ga0184619_100924932 76Ga0184619_103123371 77Ga0066655_114435262 78Ga0066667_101792714 79Ga0066662_123626752 80Ga0193723_11100411 81Ga0193723_11838081 82Ga0193747_11104271 83Ga0193729_10352503 84Ga0193751_11348291 85Ga0193728_11262073 86Ga0193728_11891113 87Ga0193728_12912971 88Ga0193728_13219281 89Ga0193730_10384763 90Ga0193735_10455751 91Ga0193733_10119122 92Ga0193750_10622011 93Ga0222622_113115161 94Ga0207684_100204462 95Ga0209234_11137873 96Ga0209236_12163801 97Ga0209239_12656471 98Ga0209267_11000222 99Ga0209059_12939212 100Ga0209488_105116642 101Ga0307305_103826941 102Ga0307310_106701341 103Ga0307312_100902894 104Ga0307469_100203924 105Ga0307471_1034958921
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96. 1JGI25388J43891_10759032 2Ga0066683_101239561 3Ga0066680_104512891 4Ga0066679_109481743 5Ga0066684_109990681 6Ga0066678_111077871 7Ga0066682_106055162 8Ga0070698_1015447561 9Ga0066661_101853572 10Ga0066707_110100122 11Ga0066704_102886062 12Ga0066705_107318381 13Ga0066708_105570483 14Ga0066652_1018810342 15Ga0066660_112470391 16Ga0066710_1001695843 17Ga0099827_102464411 18Ga0137381_102015924 19Ga0137378_107101782 20Ga0137397_110453741 21Ga0137395_102455661 22Ga0137396_113141101 23Ga0137407_108333191 24Ga0137407_115249252 25Ga0184605_101089571 26Ga0184621_102588812 27Ga0193729_10352503 28Ga0193728_11891113 29Ga0193728_13219281 30Ga0193750_10622011 31Ga0222622_113115161
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Ga0137395_101963844 2Ga0066680_104512891 3Ga0066679_109481743 4Ga0066684_109990681 5Ga0070708_1000097518 6Ga0066681_103393663 7Ga0066681_108492471 8Ga0070698_1015447561 9Ga0070697_1006965642 10Ga0066661_101853572 11Ga0066661_104129542 12Ga0066707_110100122 13Ga0066704_102886062 14Ga0066700_1002150410 15Ga0066708_105570483 16Ga0066651_107528082 17Ga0066652_1018810342 18Ga0066710_1025083891 19Ga0066710_1032484261 20Ga0099827_102464411 21Ga0066709_1028337861 22Ga0066709_1029042071 23Ga0137383_102419511 24Ga0137381_102015924 25Ga0137376_102878824 26Ga0137376_106575052 27Ga0137395_102455661 28Ga0137396_113141101 29Ga0137404_111696431 30Ga0134079_106949242 31Ga0184605_101444872 32Ga0184605_104295803 33Ga0184621_102588812 34Ga0184619_103123371 35Ga0193751_11348291 36Ga0193728_13219281 37Ga0193735_10455751 38Ga0222622_113115161 39Ga0307469_100203924 40Ga0307471_1034958921
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00072	Response_reg	6.67
PF12680	SnoaL_2	1.90
PF00933	Glyco_hydro_3	0.95
PF07883	Cupin_2	0.95
PF07690	MFS_1	0.95
PF00196	GerE	0.95
PF06094	GGACT	0.95
PF00581	Rhodanese	0.95
PF05235	CHAD	0.95
PF05656	DUF805	0.95

Showing 1 to 10 of 12 entries

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COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.95
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.95
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.95
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.95
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.95
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.24 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.29 %
Unclassified	root	N/A	4.76 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.29 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	83.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	65.71 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.71 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.71 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.71 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.71 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.71 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Granulicella sp. S190	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %
Unclassified	root	N/A	4.76 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002909\|JGI25388J43891_1075903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300002912\|JGI25386J43895_10175374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300005167\|Ga0066672_10041449	All Organisms → cellular organisms → Bacteria → Proteobacteria	2592	Open in IMG/M
3300005172\|Ga0066683_10123956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1577	Open in IMG/M
3300005174\|Ga0066680_10451289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005175\|Ga0066673_10533564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300005176\|Ga0066679_10948174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005178\|Ga0066688_10187530	All Organisms → cellular organisms → Bacteria → Acidobacteria	1309	Open in IMG/M
3300005179\|Ga0066684_10999068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300005180\|Ga0066685_10735275	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M

Showing 1 to 10 of 104 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.57%
Terrestrial	Environmental → Terrestrial	91.43%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	8.57%
Soil	Environmental → Terrestrial → Soil	91.43%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	5.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.57%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	41.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.57%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	13.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.24%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.76%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M

Showing 1 to 10 of 80 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25388J43891_10759032	3300002909	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLSQIREELSKMMVKPTREQ*
JGI25386J43895_101753742	3300002912	Grasslands Soil	YKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0066672_100414492	3300005167	Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0066683_101239561	3300005172	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQRGQ*
Ga0066680_104512891	3300005174	Soil	VDYKEISERIALLTQDIRDLEEMNARYWKQSEYTRRISRAAHESREIRLRQIKEELSRMMLKRSA*
Ga0066673_105335641	3300005175	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ*
Ga0066679_109481743	3300005176	Soil	DFSMDYKDISERIALLTQEIRELQDMNEQYSKLSEGNQKTGRAAHELRELRLRQIKEELSRMMLKPTQREQ*
Ga0066688_101875302	3300005178	Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLSQIREELSKMMVKPTREQ*
Ga0066684_109990681	3300005179	Soil	MRYDFTMDYKDITERIALLTQEIRDLQRIELSDSNYRINRTTHEQRELRLKQIKEELSRMMSKPSQREQKWPIV*
Ga0066685_107352752	3300005180	Soil	MDYKDISERIALLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0066678_111077871	3300005181	Soil	LLTQEIRDLQRMNEPHSTHSEGNHRIDRASHEQRELRLRQIKEELSRMMLKPTQREQ*
Ga0070708_1000097518	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDYKEISERIALLTQEIRDLQGMNEPYSKHSEGNQKISRASHDERALRLRQIKEELSRMMLKPRQREQ*
Ga0066682_106055162	3300005450	Soil	CLATHYLNSRYDFCMDYKDISERIALLTQEIRDLQRMNEPTHSEGNHRTDRASHEQRELRLKQIKEELWRMMLKPTQREQ*
Ga0066681_103393663	3300005451	Soil	MRYDFSMDYKDISERIALLTQEIRDLQRMNEPHSTHEGNYRIDRASHEQRELRLRQIKEELLRMMLKPTQREQ*
Ga0066681_105745803	3300005451	Soil	MFSMDYKDISERISLLTQEIRDLQRMDAALHCDSRISRASRRKERELRLSQIREELSKMMVKPTREQ*
Ga0066681_108492471	3300005451	Soil	MDYKDISERIALLTQEIRDLQRMNATYSKQSEGSQRTSRASHEERELRLRQIREELSKMMVKPTRREQ*
Ga0066687_101195312	3300005454	Soil	MDYKDISERIALLTQEIRELQDMNEQYSKLSEGNQKTGRAAHELRELRLRQIKEELSRMMLKPTQREQ*
Ga0070698_1015447561	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDYKDISERIALLTQEIRELQRMNEPYSMHSDGSHSIDRASREQRELRLKQIKQELLGMMLKPTQREQ*
Ga0070697_1002550972	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDYKDISERIALLTREIRDLQGMNEPYSKHEGNRVNRASHDERALRLRQIKEELSRMMLKPTQREQ*
Ga0070697_1006965642	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRIPRYDFSMDYRDISERIALLTQEIRELQRINEPYSTHSESNQRTVRASHEQRELRLKQIKEELSRMMPKPTQREQ*
Ga0066695_102179562	3300005553	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQR
Ga0066661_101853572	3300005554	Soil	MDYKDISERIALLTQEIRDLQRMNEPHSTHSGNYRIDRASHGNESFALDKKAEELWTMILKPTQREQ*
Ga0066661_102203741	3300005554	Soil	YKDISERIALLKQEIRDLQRMNEPRATHSEGNHRTDRASHEQRELRLRQIKEELWRMMLKPTQREQ*
Ga0066661_104129542	3300005554	Soil	MSFSSGTQEIRELQRMNEPYSMHSDGSHRIDRASHEQRELRLKQIKHELLGMMSKPTQREQ*
Ga0066707_110100122	3300005556	Soil	MDYKDISERIALLTQEIRDLQDMNAQYRKQSEHTRRISRATQEARQLRLLQIKEELSTMIRKRAAISEITP*
Ga0066704_102886062	3300005557	Soil	MDYKDISERIALLTQEIRELQRINSAYPNQSDGNPLNRTSYEQRELRLKQIKQELLGMMSKP
Ga0066700_1002150410	3300005559	Soil	DISERIALLTQEIRDLQQINAPYPNQRDGHHRIDRASHEQRELRLRQIKEELWRMMLKPTQREQ*
Ga0066699_107330531	3300005561	Soil	MDYQDISERIALLTQEIRNLQRMDAALHCDSRISRASRRKERELRLSQIREELSKMMVKPTREL*
Ga0066703_104663093	3300005568	Soil	DISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKEELSKMMLKRSA
Ga0066705_107318381	3300005569	Soil	MDYKDISERIALLTQEIRDLQRMNEPTHSEGNHRTDRASHEQRELRLRQIKEEL
Ga0066708_105570483	3300005576	Soil	MDYKDISERIAALTKEIRELQRMDGLYSTHSESNQRASYEQRELRLKQIKEELSRMMSKPTQREQSWPIV*
Ga0066651_107528082	3300006031	Soil	RYDFSMDYKDISERISLLTQEIRELQRINSAYPNQSDGNPFNRTSYEQRELRLKQIKEELSRMMPRPTQREQ*
Ga0066652_1018810342	3300006046	Soil	VDYKDISERIALLTQEIRDLQRMNASDGNQRINRASHEERELRLRQIKQELSRMMSKPTQREQ*
Ga0066659_110447042	3300006797	Soil	MDYKDISERIALLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLSQIR
Ga0066660_112470391	3300006800	Soil	IRDLQRMDIALDCDGDQRISLASRRKERELRLRQIKEELSKMMLKRSA*
Ga0066710_1001425813	3300009012	Grasslands Soil	MDYKDISERIALLTQEIRDLQDMNAQYRKQSEHTRRISRATQEARQLRLLQIKEELSRMMRKRTAQCDITL
Ga0066710_1001695843	3300009012	Grasslands Soil	MSHSRRYDFSVDYKDIAERIALLTQEIRDLQRMNEPDSTHSEGKPRMDRASREQRELRLKQIKQELLGMMSKPTQREQ
Ga0066710_1025083891	3300009012	Grasslands Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSESHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ
Ga0066710_1032484261	3300009012	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALLCYGGQRISRASRRKERELRLRQIRDELAKMRLKPTQREQ
Ga0099827_102464411	3300009090	Vadose Zone Soil	MSLSRYDFSVDYKDISERIAVLTQEIRELQRMNEPHSTHEGNHRTDRASHEQRELPLRQIREEL
Ga0066709_1028337861	3300009137	Grasslands Soil	LNSRYDFSMDYKDISERIALLTQEIHDLQEMNARYWKQSEYTRRISRAAHESREIRLRQIRAELSRMMLKRTA*
Ga0066709_1029042071	3300009137	Grasslands Soil	MSHSRRYDFSVDYKDIAERIALLTQEIRDLQRMNEPDSTHSEGKPRMDRASREQRELRLKQIKQELLGMMSKPTQREQ*
Ga0134109_104038531	3300010320	Grasslands Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSESHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ*
Ga0137383_102419511	3300012199	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQDMNGQYRKQSEHTRRISRATQEARQLRLLQIKEELSRMMRKRTAQCDITL*
Ga0137382_102045612	3300012200	Vadose Zone Soil	MRYDFSMGYKDISQRIALLTQEIRDLQQINAPYPNQSESHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ*
Ga0137382_107835601	3300012200	Vadose Zone Soil	MDYKDISERIAVLTQEIRELQRMNEPYLMHSDGSHRIDRASHEQRELRLKQIKEELSRMMSKPTQREQSWPIV*
Ga0137382_110189031	3300012200	Vadose Zone Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSESHHRIDRASHEQRELRLKQIKEELSRMMP
Ga0137365_102250182	3300012201	Vadose Zone Soil	MDYKDISERIAVLTQEIRELQRMNEPYSMHSDGSHRIDRASHEQRELRLKQIKEELSRMMSKPTQREQ*
Ga0137381_100177871	3300012207	Vadose Zone Soil	MDYKDISERIALLAQEIRDLQRMDAALQCDSRISRASRRKERELRLSQIREELSKM
Ga0137381_102015924	3300012207	Vadose Zone Soil	MHYTELNMDYKDISERIGLLTQEIRDLQRMNAVLHCDGSPRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0137376_102878824	3300012208	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQRIEQSDSNDRINRTSHEQRELRLKQIKQELLGMMSKPTQREQ*
Ga0137376_106575052	3300012208	Vadose Zone Soil	MDYQEISGRIALLTQEIRDLQEMNARYWKQSERTRRLGRATHENRELRLRQIREELSRMVPKRIA*
Ga0137379_107594672	3300012209	Vadose Zone Soil	SHLNHRRCKMHYTELNMDYKDISERIGLLTQEIRDLQRMNAVLHCDGSPRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0137378_107101782	3300012210	Vadose Zone Soil	HFRMDYKDISERIALLTREIRDLQHSEDNHRIDRASHEQRELRLRQIKEELSRMMLKPTQREL*
Ga0137377_103203463	3300012211	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQRMDTALLCYGGQRISRASRRKERELRLRQIRDELSGMMKPTQREQ*
Ga0137386_101655551	3300012351	Vadose Zone Soil	MHYTELNMDYKDISERIGLLTQEIRDLQRMNAILHCDGSPRISRASRRKERELRLRQIKEELSKMMLKRSA*
Ga0137366_110760881	3300012354	Vadose Zone Soil	LYHFRMDYKDISERIAVLTQEIRELQRMNEPYSMHSDGSHRIDRASHEQRELRLKQIKEELSRMMSKPTQREQ*
Ga0137397_110453741	3300012685	Vadose Zone Soil	VLELIEKVLFVSRCRVYDFRVDYKEISERIALLKQEIHDLQEMNARYWQQTEYTRRISRAAHESREIRLRQIREELSRMMLKRTA*
Ga0137395_101963844	3300012917	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQRMNEPYSMHSDGSHRTDRASHEQRELRLKQIKEELSRMMPKPIQREQ*
Ga0137395_102455661	3300012917	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQEMNARYCTESEHTRRISRAVHQARALRLLQI
Ga0137396_113141101	3300012918	Vadose Zone Soil	PLNAQEIRDLQEMNARYCTENEHTRRISRAAHEARALRLLQIKEELSRMMLKRTASRG*
Ga0137419_113286842	3300012925	Vadose Zone Soil	IALLTQEIRDLQRMDEPYSTHEGNYRIDRASHEQRELRLRQIKEELSRMMPKPTQREQ*
Ga0137404_111696431	3300012929	Vadose Zone Soil	RELQRMNEPYSMHSEGNHRIDRASHEQRELRLKQIKEELSRMMPKPTQRER*
Ga0137407_108333191	3300012930	Vadose Zone Soil	DLQQINAPYPNQRDGHHRIDRASHEQRELRLRQIKEELSRMMLKPTQREQ*
Ga0137407_115249252	3300012930	Vadose Zone Soil	TQEIRDLQQSDDNHRIDRTSHEQRELRLKQIKEELSRMMPKPIQREQ*
Ga0137407_117978761	3300012930	Vadose Zone Soil	SSSHRLTGDRLMFSMDYKDISERITLLTQEIRDLQRMDAALHCDSRISRASRRKERELRLSQIREELSKMMVKPTREQ*
Ga0134079_106949242	3300014166	Grasslands Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKQELLGMMSKPIQREQ*
Ga0137403_101065273	3300015264	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQRMNEPHSTHEGNYRTDRASHEQRELRLKQIKQELLGMMLKPTQREQ*
Ga0184605_1000271810	3300018027	Groundwater Sediment	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ
Ga0184605_100603601	3300018027	Groundwater Sediment	MDYKDISERIALLTQEIRDLQRMDAALHCDSRISRASRRKERELRLSQIREQLSKMMVKPTREQ
Ga0184605_101089571	3300018027	Groundwater Sediment	MRYDFTMDYKDISERIALLTQEIRELQEIDAHYSKPSESTHRTNRASREARELRLLQIKQELSRLMPKARP
Ga0184605_101444872	3300018027	Groundwater Sediment	VDYKDISERIALLTQEIHDLQEMNARYWKQSEHTRRISHAAHESRELRLRQIKEELSRMMLKRAA
Ga0184605_104295803	3300018027	Groundwater Sediment	MFSMDYKDISERITLLTQEIRDLQRMDTALHCDGSQRISRASRPKERELRLSQIREELSKMMVKPTREQ
Ga0184621_102588812	3300018054	Groundwater Sediment	LTQEIRDLQRMNASDGNQRISRVSHEERELRLKQIKQELLGMMSKPTQRER
Ga0184619_100924932	3300018061	Groundwater Sediment	MRYDFSMDYKDISQRIALLTQEIRDLQQVNATYPNQSDSYHRIDRATHEQRELRLKQIKEELSRMMPRPTQQEQ
Ga0184619_103123371	3300018061	Groundwater Sediment	MRYDFTMDYKDISERITLLTQEIRDLQEIDAHYSKPSESTHRTNRASREARELRLLQIKQELSRLMPKARP
Ga0066655_114435262	3300018431	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLSQIREELSKMMVKP
Ga0066667_101792714	3300018433	Grasslands Soil	MDYKDISERITLLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLSQIREELSKMMVKPTREQ
Ga0066662_123626752	3300018468	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKEELSKMMLKRSA
Ga0193723_11100411	3300019879	Soil	DFTMDYKDISERIALLTQEIRDLQEIDAQYSKPSESTHRTNRASREARELRLLQIKQELSRLMPKARP
Ga0193723_11838081	3300019879	Soil	RYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ
Ga0193747_11104271	3300019885	Soil	RHDFGMDYKEISERIALLTQEIRDLQEMNARYWRQSERTRRLGRATHENRELRLRQIREELSRMMLKRTA
Ga0193729_10352503	3300019887	Soil	MDYKDISERIALLTQEIRDLRRMNDSHEGDGRTSRASHEERELRLRQIKEELSRMMLKRS
Ga0193751_11348291	3300019888	Soil	MDYKDISERIALLTQEIRDLQRMNDSHEGDGRTSRASHDERELRLRQIQEELSKMMKRSA
Ga0193728_11262073	3300019890	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQEINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQREQ
Ga0193728_11891113	3300019890	Soil	RIALLTQEIRDLQEMNARYWKQSERTRRLGRAIHENRELRLRQIREELSRMMPKRIA
Ga0193728_12912971	3300019890	Soil	MDYKDISERIALLTQEIRDLQRMNDSYEGDGRTSRASPDERELRLRQIQEELSKMMKRSA
Ga0193728_13219281	3300019890	Soil	MISSVDYKDISERIAVLTQEIRDLQEMNVRYSKETEHTRRISRAAHEGRALRLLQIKEELSRMLKRTASEVML
Ga0193730_10384763	3300020002	Soil	MDYQEISERIALLTQEIRDLQEMNARYWKQSEHTRRLGRAIHENRELRLRQIREELSRMMPKRIA
Ga0193735_10455751	3300020006	Soil	MDYKDISERIALLAQEIRDLQEMNARYWKQSERTRRLGRATHENRELRLRQIREELSRMMLKRTA
Ga0193733_10119122	3300020022	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHHRIDRASHEQRELRLKQIKEELSRMMPRPTQQEQ
Ga0193750_10622011	3300021413	Soil	MFSMDYKDISERITLLTQEIRDLQQMNAAYSKLSEGSQRTSRASHEERELRLRQ
Ga0222622_113115161	3300022756	Groundwater Sediment	QRYDSGMDYKDIAERITLLTQEIRDLQRMNEPHPTHEGKPRMDRSSCEQRDLRLKQIKQNCWG
Ga0207684_100204462	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDYKEISERIALLTQEIRDLQGMNEPYSKHSEGNQKISRASHDERALRLRQIKEELSRMMLKPRQREQ
Ga0209234_11137873	3300026295	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLSQIREELSKMMVKPTREQ
Ga0209236_12163801	3300026298	Grasslands Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKE
Ga0209239_12656471	3300026310	Grasslands Soil	MFSMDYKDISERISLLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIREELSKMMLKP
Ga0209267_11000222	3300026331	Soil	MDYKDISERIALLTQEIRDLQRMDTALHCYGSQRISRASRRKERELRLSQIREELSKMMVKPTREQ
Ga0209059_12939212	3300026527	Soil	MDYKDISERIALLTQEIRELQDMNEQYSKLSEGNQKTGRAAHELRELRLRQIKEELWRMMLKPTQREQ
Ga0209488_105116642	3300027903	Vadose Zone Soil	MDYKDISERIALLTQEIRDLQRMDTALHCDGSQRISRASRRKERELRLRQIKEELSKMMLKPTREQ
Ga0307305_103826941	3300028807	Soil	MRYDFSMDYKDISQRIALLTQEIRDLQQINAPYPNQSDSHQRIDRASHEQRELRLKQIKEELSRMMPRPTQRGQ
Ga0307310_106701341	3300028824	Soil	MDYKDISERIALLTQEIRDLQRMNDSYEGDGRTSRASPDERELRLRQIQE
Ga0307312_100902894	3300028828	Soil	MDYKEISERIALLTQEIRDLQEMNARYWKQSERTRRLGRATHENRELRLRQIREELSRMMLKRTA
Ga0307469_100203924	3300031720	Hardwood Forest Soil	MIHSWRYDFSVHSKDITERIALLTQKTRDLQRMNEPDPTHSEGKPGMDRASREQRELRLKQIKQEMLGMMSKPTQREQ
Ga0307471_1034958921	3300032180	Hardwood Forest Soil	MDYKDISERIALLTQEIRDLQRMDTPYLKQSEGNHRISRASHEERELRLKQIKEELSRMMLKPTERGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters