NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095151

Metagenome Family F095151

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095151
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 42 residues
Representative Sequence MTDFSKYKNITVDNDTYATITKLQTKLAPDVKLSRSQVVKT
Number of Associated Samples 93
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 78.95 %
% of genes near scaffold ends (potentially truncated) 13.33 %
% of genes from short scaffolds (< 2000 bps) 14.29 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (89.524 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.714 % of family members)
Environment Ontology (ENVO) Unclassified
(46.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(55.238 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1QL_na_6329910
2DelMOWin2010_100356401
3JGI11772J19994_10120861
4JGI11772J19994_10200995
5JGI25907J50239_10324514
6Ga0070749_106455003
7Ga0070749_106983411
8Ga0070746_102104841
9Ga0098036_10760994
10Ga0075460_102081401
11Ga0075460_102560491
12Ga0070753_10988666
13Ga0099849_12209354
14Ga0099849_12233041
15Ga0099849_13253191
16Ga0099848_12606913
17Ga0099846_12770133
18Ga0070751_13092841
19Ga0099850_13409653
20Ga0114363_10711874
21Ga0102960_12666132
22Ga0105098_104505414
23Ga0114970_103496311
24Ga0114975_106938381
25Ga0114902_11387191
26Ga0115569_105171673
27Ga0129345_11123134
28Ga0129351_11134636
29Ga0136655_10701326
30Ga0129333_108725992
31Ga0129333_115916303
32Ga0136851_119327123
33Ga0139328_1190441
34Ga0172367_101525383
35Ga0172365_102326604
36Ga0172363_104483661
37Ga0172372_109161702
38Ga0172375_100425713
39Ga0172371_108361913
40Ga0177922_112578193
41Ga0119960_10350931
42Ga0181415_11317751
43Ga0181400_11683131
44Ga0181382_11490231
45Ga0181382_11805441
46Ga0181386_10648132
47Ga0169931_105470921
48Ga0169931_107726203
49Ga0181577_109379381
50Ga0180433_100926816
51Ga0181592_108285893
52Ga0181359_12326523
53Ga0194110_108369423
54Ga0211735_100465362
55Ga0194134_100074697
56Ga0211731_112769653
57Ga0181570_103282993
58Ga0211707_10252431
59Ga0211677_1001254211
60Ga0208600_10101835
61Ga0208855_10103581
62Ga0194133_105411491
63Ga0213864_102628545
64Ga0222716_103859984
65Ga0222714_101456485
66Ga0222714_101720816
67Ga0222713_107922511
68Ga0212029_10148265
69Ga0212024_10983623
70Ga0212020_10873183
71Ga0196891_10756572
72Ga0181354_12291292
73Ga0196905_11318221
74Ga0196901_10715986
75Ga0255762_103012694
76Ga0255761_104044524
77Ga0208919_10537571
78Ga0209645_10841201
79Ga0208814_11308293
80Ga0208181_10757841
81Ga0208161_10796431
82Ga0208162_10810125
83Ga0208019_11115094
84Ga0208767_10064861
85Ga0209714_11794293
86Ga0208547_11500221
87Ga0208644_11330946
88Ga0208916_104063763
89Ga0208966_10721694
90Ga0247836_10309982
91Ga0247836_10926592
92Ga0247836_11792193
93Ga0209598_102714991
94Ga0209134_101036924
95Ga0209536_1011797001
96Ga0257127_11653283
97Ga0247843_11453073
98Ga0307376_102985181
99Ga0307376_106542553
100Ga0307375_101984025
101Ga0315284_105504091
102Ga0315902_112746191
103Ga0334996_0504577_1_120
104Ga0334985_0209357_2_106
105Ga0348336_082781_1_108
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.64%    β-sheet: 0.00%    Coil/Unstructured: 75.36%
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Variant

510152025303540MTDFSKYKNITVDNDTYATITKLQTKLAPDVKLSRSQVVKTSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
10.5%89.5%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Sediment
Sediment
Freshwater
Aquatic
Marine
Deep Ocean
Marine Sediment
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Marine
Seawater
Pond Water
Saline Water
Saline Water And Sediment
Hypersaline Lake Sediment
Mangrove Sediment
Soil
3.8%11.4%2.9%2.9%2.9%2.9%2.9%2.9%25.7%4.8%4.8%3.8%4.8%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
QL_na_63299102022920000Saline WaterMTDKSKYSNVTVDNQTYAIITKLQTKLVPEVTLSRSQVIKTI
DelMOWin2010_1003564013300000117MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSR
JGI11772J19994_101208613300001748Saline Water And SedimentMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSR
JGI11772J19994_102009953300001748Saline Water And SedimentMTDFSKYKNITVDKDTYATLQMQTKLADNVKLSRSQVVKTLVQE
JGI25907J50239_103245143300003394Freshwater LakeMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKLS*
Ga0070749_1064550033300006802AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSRSQVVKTLV
Ga0070749_1069834113300006802AqueousMTDRSKYSNVTVDNKTYEIITKLQTKLIPDMKISRSQ
Ga0070746_1021048413300006919AqueousMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQ
Ga0098036_107609943300006929MarineMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQVVTSLVNE
Ga0075460_1020814013300007234AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSRSQVVKTLVTE
Ga0075460_1025604913300007234AqueousMTDFSKYKNITVDNETYVTVTKLQTKMTPDVKLSRSQVI
Ga0070753_109886663300007346AqueousMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVVKT
Ga0099849_122093543300007539AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVK
Ga0099849_122330413300007539AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLV
Ga0099849_132531913300007539AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISR
Ga0099848_126069133300007541AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQ
Ga0099846_127701333300007542AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQII
Ga0070751_130928413300007640AqueousMTDFSKYKNITVDNETYVTVTKLQTKMTPDVKLSRSQVIK
Ga0099850_134096533300007960AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQV
Ga0114363_107118743300008266Freshwater, PlanktonMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQVIKTL
Ga0102960_126661323300009000Pond WaterMTDFNKYKNVTVDNETYATITKLQTKLKDDVKLSRSQVVKTLVTEKAR
Ga0105098_1045054143300009081Freshwater SedimentMTDFNKYKNITVDNDTYGFVTKLQTKLKKDIKLSRSQ
Ga0114970_1034963113300009163Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQ
Ga0114975_1069383813300009164Freshwater LakeMTDFSKYKNITVDNDTYGLVTRLQTKLKRDVKLSRSQVIKTLVNEK
Ga0114902_113871913300009413Deep OceanMTDFSKYKNITVDNDTYATITKLQTKITQDVKLSRSQVVKTL
Ga0115569_1051716733300009497Pelagic MarineMTDFTKYKNITVDHATYETITKLQTKLTTDVKLSRSQVVK
Ga0129345_111231343300010297Freshwater To Marine Saline GradientMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRS
Ga0129351_111346363300010300Freshwater To Marine Saline GradientMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLVQ
Ga0136655_107013263300010316Freshwater To Marine Saline GradientMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVV
Ga0129333_1087259923300010354Freshwater To Marine Saline GradientMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQVIK
Ga0129333_1159163033300010354Freshwater To Marine Saline GradientMTDFSKYKNVTVDNDTYTIITKLQTKMTPDVKLSRSQVVKTL
Ga0136851_1193271233300010413Mangrove SedimentMTDFSKYKNITVDKDTYGTITKMQTKLAENVKLSRS
Ga0139328_11904413300010994SedimentMTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQV
(restricted) Ga0172367_1015253833300013126FreshwaterMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVVKTLVKEKARNLNGSLK*
(restricted) Ga0172365_1023266043300013127SedimentMTDFNKYKNITVDNHTYAIVTKLQTKLKKDVKLSRSQVI
(restricted) Ga0172363_1044836613300013130SedimentKVKMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
(restricted) Ga0172372_1091617023300013132FreshwaterMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIK
(restricted) Ga0172375_1004257133300013137FreshwaterMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
(restricted) Ga0172371_1083619133300013138FreshwaterVKMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
Ga0177922_1125781933300013372FreshwaterMTDFNKYKNITVDNDTYATVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK*
Ga0119960_103509313300014811AquaticMTDFNKYRNITVDKDTYGIVTKLQTKLKEDIKLSRSQVIKTLVNESVRS*LGN
Ga0181415_113177513300017732SeawaterMTDFTKYKNITVDHATYETITKLQTKLTTDVKLSRS
Ga0181400_116831313300017752SeawaterMTDFSKYKNITVDNDTYATITRLQTKITPDVKLSRSQVVKTL
Ga0181382_114902313300017756SeawaterMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRS
Ga0181382_118054413300017756SeawaterMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQ
Ga0181386_106481323300017773SeawaterMTDFTKYKNITVDHATYETITKLQTKLTTDIKLSRSQVVKTLVKEKARELNGKLSK
Ga0169931_1054709213300017788FreshwaterNMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVVKTLVKEKARNLNGSLK
Ga0169931_1077262033300017788FreshwaterMTDFSKYKNITVDNQTYAIVTKLQTRLKRDVKLSRSQVV
Ga0181577_1093793813300017951Salt MarshMTDFNKYKNITVDNETYDNVTKLQTAMVPDMKISRSAVVKS
Ga0180433_1009268163300018080Hypersaline Lake SedimentMTDFSKYKNITVDKECYAVITKLQTKLKEDVKLSRSQVVKTLVTEKARRLNGKLDKK
Ga0181592_1082858933300018421Salt MarshMKGKRMTDFSKYKNITVDNATYETITKLQTKLATDVKLS
Ga0181359_123265233300019784Freshwater LakeMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLV
Ga0194110_1083694233300020084Freshwater LakeMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGKLTK
Ga0211735_1004653623300020162FreshwaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIK
Ga0194134_1000746973300020179Freshwater LakeMTDFNKYKNITVDNDTYAIVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK
Ga0211731_1127696533300020205FreshwaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLVNE
Ga0181570_1032829933300020207Salt MarshMTDFSKYKNITVDNATYETITKLQTKLATDVKLSRSQ
Ga0211707_102524313300020246MarineMTDFSKYKNITVDNDTYAIITKLQTQIAPDVKLSRSQVVKTLAKEKAKKL
Ga0211677_10012542113300020385MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQV
Ga0208600_101018353300020550FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKNDVKLSRS
Ga0208855_101035813300020553FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRS
Ga0194133_1054114913300021091Freshwater LakeMTDFNKYKNITVDNETYSVVTKLQTKLKKDVKLSRSQVVKTLVKEKARK
Ga0213864_1026285453300021379SeawaterMTDYTKYKNVTVDNKTYDTITKMQTKLKSDVKLSRS
Ga0222716_1038599843300021959Estuarine WaterMTDFSKYKNITVDKDTYGTITKMQTKLADNVKLSR
Ga0222714_1014564853300021961Estuarine WaterSKYSNVTVDNQTYAIITKLQTKLVPEVTLSRSQVIKTIVQEKAKTLNGRLK
Ga0222714_1017208163300021961Estuarine WaterMTDFSKYKNITVDNDTYAVVTKLQTKMTPDVKLSRS
Ga0222713_1079225113300021962Estuarine WaterMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSRSQVIKTLVNEK
Ga0212029_101482653300022063AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTLVQE
Ga0212024_109836233300022065AqueousMTDFSKYKNVTVDNDTYATITKMQTKLKKDIKLSRSQVVK
Ga0212020_108731833300022167AqueousMTDFSKYKNVTVDNDTYSIITKLQTKLKDDVKLSR
Ga0196891_107565723300022183AqueousMTDFTRYKNVTVDKKTYETITKMQTKLTPDTKLSRSQVVT
Ga0181354_122912923300022190Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKSDVKLSRSQVIKTLVN
Ga0196905_113182213300022198AqueousMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVKE
Ga0196901_107159863300022200AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKTL
Ga0255762_1030126943300023119Salt MarshMKGKRMTDFSKYKNITVDNATYETITKLQTKLATDV
Ga0255761_1040445243300023170Salt MarshMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVK
Ga0208919_105375713300025128MarineMTDFSKYKNITVDNDTYATITKLQTKIAPDVKLSRSQ
Ga0209645_108412013300025151MarineMTDFSKYKNITVDNDTYATITKLQTKLAPDVKLSRSQVVKT
Ga0208814_113082933300025276Deep OceanMKERLYKMTDFSKYKNITVDNNTYATITKLQTKIA
Ga0208181_107578413300025300Deep OceanMTDYNKYKNVTVDNKTYDTITKMQTKLTPDTKLSRSQVVT
Ga0208161_107964313300025646AqueousMTDKSKYSNVTVDNKTYEIITKLQTKLVPDMKISRSQVIKQI
Ga0208162_108101253300025674AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRS
Ga0208019_111150943300025687AqueousMTDFSKYKNITVDKDTYATITRMQTKLADNVKLSRSQVVKT
Ga0208767_100648613300025769AqueousMTDFSKYKNVTVDNDTYTTITKLQTKLKDDVKLSRSK
Ga0209714_117942933300025822Pelagic MarineMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVV
Ga0208547_115002213300025828AqueousMTDKSKYSNVTVDNKTYEIITRLQTKLIPDMKISRSQ
Ga0208644_113309463300025889AqueousMTDFSKYKNITVDNETYATVTRLQTKMTPDVKLSRSQVIKTLVKEK
Ga0208916_1040637633300025896AqueousMTDFSKYKNVTVDNDTYAKLTKLQTKMVNDDLKLSRSQIVK
Ga0208966_107216943300027586Freshwater LenticMTDFSKYKNITVDNDTYGLVTKLQTKLKRDIKLSR
(restricted) Ga0247836_103099823300027728FreshwaterMTDFNKYKNITVDNDTYATVTKLQTKLKRDIKLSRSQVIKTLVKEKARLLNGSLTK
(restricted) Ga0247836_109265923300027728FreshwaterMTDFNKYKNITVDNDTYTTVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLSK
(restricted) Ga0247836_117921933300027728FreshwaterMTDFNKYKNITVDNDTYSTVTKLQTKLKRDVKLSRSQVIKTLVKEKARLLNGSLTK
Ga0209598_1027149913300027760Freshwater LakeMTDFSKYKNITVDNDTYGLVTRLQTKLKRDVKLSRSQVIKT
Ga0209134_1010369243300027764Freshwater LakeMTDFSKYKNITVDNDTYAIVTKLQTKLKNDIKLSRSQVIKTLVNEK
Ga0209536_10117970013300027917Marine SedimentMTDFTKYKNVTVDNKTYDVITKMQTKLTPDIKLSRSQ
Ga0257127_116532833300028189MarineIGKNIITERLYKMTDFSKYKNITVDKETYSTITKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGRLSK
(restricted) Ga0247843_114530733300028569FreshwaterMTDFNKYKNITVDNDTYSTVTKLQTKLKRDVKLSRSQVIKTLVKEKARL
Ga0307376_1029851813300031578SoilMTDKSKYSNVTVDNQTYAIITKLQTKLVPEVTLSR
Ga0307376_1065425533300031578SoilMTDKSKYSNITVDNKTYDIITKLQMKLIPEMKISRSQVVKQ
Ga0307375_1019840253300031669SoilMTDKSKYSNITVDNKTYDIITKLQMKLIPKMKISRSQV
Ga0315284_1055040913300032053SedimentMTDFSKYKNITVDNDTYGLVTKLQTKLKRDVKLSR
Ga0315902_1127461913300032093FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQ
Ga0334996_0504577_1_1203300033994FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKKDIKLSRSQVIK
Ga0334985_0209357_2_1063300034018FreshwaterMTDFSKYKNITVDNDTYAIVTKLQTKLKNDVKLSR
Ga0348336_082781_1_1083300034375AqueousMTDFSKYKNITVDKDTYGTITKMQTKLADNVKLSRS


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