Metagenome / Metatranscriptome Family F095095

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095095
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	47 residues
Representative Sequence	MSESEQPSRIETFLYDADGNRTEDESVAVRGEVVELDAAGRVIARHA
Number of Associated Samples	97
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	98.10 %
% of genes from short scaffolds (< 2000 bps)	83.81 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.238 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.524 % of family members)
Environment Ontology (ENVO)	Unclassified (39.048 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.00% Coil/Unstructured: 68.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01545	Cation_efflux	11.43
PF12695	Abhydrolase_5	5.71
PF00232	Glyco_hydro_1	4.76
PF13091	PLDc_2	2.86
PF13522	GATase_6	2.86
PF06772	LtrA	2.86
PF13456	RVT_3	1.90
PF08352	oligo_HPY	1.90
PF12850	Metallophos_2	1.90
PF00528	BPD_transp_1	0.95
PF03358	FMN_red	0.95
PF05988	DUF899	0.95
PF13460	NAD_binding_10	0.95
PF13632	Glyco_trans_2_3	0.95
PF01625	PMSR	0.95
PF00753	Lactamase_B	0.95
PF12697	Abhydrolase_6	0.95
PF11189	DUF2973	0.95
PF00857	Isochorismatase	0.95
PF03109	ABC1	0.95
PF04545	Sigma70_r4	0.95
PF12706	Lactamase_B_2	0.95
PF13515	FUSC_2	0.95
PF09985	Glucodextran_C	0.95
PF03729	DUF308	0.95
PF02036	SCP2	0.95
PF00027	cNMP_binding	0.95
PF00156	Pribosyltran	0.95
PF13602	ADH_zinc_N_2	0.95
PF00571	CBS	0.95
PF06480	FtsH_ext	0.95
PF07452	CHRD	0.95
PF00582	Usp	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	11.43
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	11.43
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	11.43
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	4.76
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	2.86
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.95
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.95
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.95
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.24 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.24 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.24 %
Unclassified	root	N/A	4.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.95 %
Unclassified	root	N/A	4.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	77.14 %
Unclassified	root	N/A	4.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.52 %
Unclassified	root	N/A	4.76 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.24 %
Unclassified	root	N/A	4.76 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.24 %
Unclassified	root	N/A	4.76 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100859101	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300001305\|C688J14111_10003895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4087	Open in IMG/M
3300004081\|Ga0063454_100426263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300004114\|Ga0062593_100804769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	935	Open in IMG/M
3300004156\|Ga0062589_100294878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1249	Open in IMG/M
3300004480\|Ga0062592_100385844	Not Available	1107	Open in IMG/M
3300005093\|Ga0062594_100617696	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300005163\|Ga0066823_10060339	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005187\|Ga0066675_10107829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1850	Open in IMG/M
3300005332\|Ga0066388_102965865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300005364\|Ga0070673_100417907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1202	Open in IMG/M
3300005438\|Ga0070701_10014466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3619	Open in IMG/M
3300005440\|Ga0070705_101949334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300005441\|Ga0070700_100012648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4718	Open in IMG/M
3300005540\|Ga0066697_10577063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300005545\|Ga0070695_100758291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300005546\|Ga0070696_100205589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1472	Open in IMG/M
3300005553\|Ga0066695_10168075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1370	Open in IMG/M
3300005841\|Ga0068863_100372356	Not Available	1394	Open in IMG/M
3300006034\|Ga0066656_10481495	All Organisms → cellular organisms → Bacteria → Terrabacteria group	809	Open in IMG/M
3300006845\|Ga0075421_100205342	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300006871\|Ga0075434_101275811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300006914\|Ga0075436_101250582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300009012\|Ga0066710_100848444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1403	Open in IMG/M
3300009090\|Ga0099827_11351488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300009137\|Ga0066709_104274322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300009156\|Ga0111538_10553808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1458	Open in IMG/M
3300009162\|Ga0075423_10592925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1168	Open in IMG/M
3300009162\|Ga0075423_11664088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300010329\|Ga0134111_10246743	All Organisms → cellular organisms → Bacteria → Terrabacteria group	732	Open in IMG/M
3300010400\|Ga0134122_12935425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300010401\|Ga0134121_11142896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300010999\|Ga0138505_100022897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300011119\|Ga0105246_10064924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2552	Open in IMG/M
3300012011\|Ga0120152_1071999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1042	Open in IMG/M
3300012198\|Ga0137364_10561383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859	Open in IMG/M
3300012201\|Ga0137365_11137204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300012285\|Ga0137370_10951963	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012354\|Ga0137366_10416822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300012356\|Ga0137371_10835306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300012357\|Ga0137384_11412934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300012361\|Ga0137360_10093000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2289	Open in IMG/M
3300012914\|Ga0157297_10159597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300012915\|Ga0157302_10176400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300012930\|Ga0137407_11078991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300012955\|Ga0164298_10594113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	759	Open in IMG/M
3300012957\|Ga0164303_10857821	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300012976\|Ga0134076_10511711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300012985\|Ga0164308_10846478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	801	Open in IMG/M
3300015077\|Ga0173483_10689438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300015357\|Ga0134072_10330539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300015358\|Ga0134089_10520532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300015359\|Ga0134085_10378508	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300015371\|Ga0132258_13561805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1065	Open in IMG/M
3300017657\|Ga0134074_1141636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300018027\|Ga0184605_10450646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300018028\|Ga0184608_10417160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300018061\|Ga0184619_10520848	Not Available	523	Open in IMG/M
3300019869\|Ga0193705_1049916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	865	Open in IMG/M
3300021080\|Ga0210382_10381573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300024275\|Ga0247674_1028715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300024317\|Ga0247660_1002497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2573	Open in IMG/M
3300025898\|Ga0207692_10297437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	981	Open in IMG/M
3300025901\|Ga0207688_10033261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2851	Open in IMG/M
3300025906\|Ga0207699_10462291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	912	Open in IMG/M
3300025928\|Ga0207700_10347344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1291	Open in IMG/M
3300025931\|Ga0207644_10668886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	865	Open in IMG/M
3300025934\|Ga0207686_10485461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	956	Open in IMG/M
3300025972\|Ga0207668_10745408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300026142\|Ga0207698_10077211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2670	Open in IMG/M
3300026547\|Ga0209156_10244746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300027846\|Ga0209180_10481576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	696	Open in IMG/M
3300027907\|Ga0207428_10045522	All Organisms → cellular organisms → Bacteria	3533	Open in IMG/M
3300028047\|Ga0209526_10772165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300028379\|Ga0268266_10540257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1116	Open in IMG/M
3300028707\|Ga0307291_1032055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1232	Open in IMG/M
3300028709\|Ga0307279_10083270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	573	Open in IMG/M
3300028711\|Ga0307293_10021048	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300028715\|Ga0307313_10056304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1158	Open in IMG/M
3300028716\|Ga0307311_10016986	All Organisms → cellular organisms → Bacteria	1780	Open in IMG/M
3300028716\|Ga0307311_10030141	Not Available	1391	Open in IMG/M
3300028718\|Ga0307307_10003290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4073	Open in IMG/M
3300028720\|Ga0307317_10277511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300028721\|Ga0307315_10019971	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300028755\|Ga0307316_10156244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300028784\|Ga0307282_10020830	All Organisms → cellular organisms → Bacteria	2754	Open in IMG/M
3300028784\|Ga0307282_10561171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300028787\|Ga0307323_10178842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300028811\|Ga0307292_10247502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300028814\|Ga0307302_10201876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
3300028824\|Ga0307310_10023788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2423	Open in IMG/M
3300028828\|Ga0307312_10026501	All Organisms → cellular organisms → Bacteria	3348	Open in IMG/M
3300028828\|Ga0307312_10035650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2918	Open in IMG/M
3300028828\|Ga0307312_10424562	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300028876\|Ga0307286_10086495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1091	Open in IMG/M
3300028881\|Ga0307277_10170689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300028884\|Ga0307308_10000637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12906	Open in IMG/M
3300028884\|Ga0307308_10029103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2562	Open in IMG/M
3300031421\|Ga0308194_10065066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	971	Open in IMG/M
3300031908\|Ga0310900_10900394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	722	Open in IMG/M
3300031908\|Ga0310900_11514127	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032180\|Ga0307471_101786446	Not Available	767	Open in IMG/M
3300033550\|Ga0247829_10476733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1032	Open in IMG/M
3300034820\|Ga0373959_0140068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300034820\|Ga0373959_0194693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.90%
Host-Associated	Host-Associated	18.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.10%
Plants	Host-Associated → Plants	18.10%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.29%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.81%
Sediment	Environmental → Aquatic → Sediment	2.86%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.71%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1008591013	3300000956	Soil	VNDTPNRIETVLYDADGNRTDDEALAVRAETVELDADGNVV
C688J14111_100038951	3300001305	Soil	MSFLSDSEQPTRIETFLYDADGNRTEEESIAVRGEVVELDADGRVTARHEHLDWAVXX
Ga0063454_1004262632	3300004081	Soil	MSFLSDSEQPTRIETFLYDADGNRTEEESIAVRGEVVELD
Ga0062593_1008047692	3300004114	Soil	MPEARIETFLYDADGNRTDDEALAVRAETVEVDAEGNVVA
Ga0062589_1002948781	3300004156	Soil	MSDRSQPSRIETFLYDADGNRTKDESLAVRGEIVELDASGRVLARRPHD
Ga0062592_1003858442	3300004480	Soil	VSDSGPPTRIETILYDADGNRTQEESIAVRGEVVELDGEGRVLARHEHL
Ga0062594_1006176961	3300005093	Soil	MTEQPTRIETFLYDADGNRTEEESMAVRGEVVELDADGRVIARHEHLDWEVDPISLEGD
Ga0066823_100603391	3300005163	Soil	MTEQPSRIETFLYDADGNRTKEESIAVRGEVVELDADGRVIARHEHLDWEVDPISLEG
Ga0066675_101078291	3300005187	Soil	MSEGGQPSRIETFLYDADGNRTEDESLAVRSETVELDADGHVLETRAHEGLDWQVDP
Ga0066388_1029658651	3300005332	Tropical Forest Soil	MSERGEPSRIETFLYDADGNRTEDESVAVRGEIVELDAAGRVLSRRPHD
Ga0070673_1004179071	3300005364	Switchgrass Rhizosphere	MSERPTRIETVLYDADGNRTDDESVAVRGEVVEVDDAGRVIARHPQ
Ga0070701_100144665	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAAGRV
Ga0070705_1019493342	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MCAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAD
Ga0070700_1000126486	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAAGRVIARHEHLDWEVDPISLE
Ga0066697_105770632	3300005540	Soil	MSEGSQPSRIETFLYDADGNRTEDESVAVRGETVELDAEGRVLARRTHEGLDWQ
Ga0070695_1007582912	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAEPRTETILYDADGNRTDDESVAVRGEVVEVDDAGRVVARHQDLDWEVDPISL
Ga0070696_1002055893	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSEGRIETFLYDADGNRTDDESLAVRAELVELDAEGRVIGRR
Ga0066695_101680751	3300005553	Soil	MSDSEQPNRIETVLYDADGNRTQEESIAVRGEVIELDAEGRVIARHEHL
Ga0068863_1003723561	3300005841	Switchgrass Rhizosphere	MAEPRTETILYDADGNRTDDESVAVRGEVVEVDDAGRV
Ga0066656_104814952	3300006034	Soil	MSEGQSNRIETILYDADGNRTDDESVAVRGEVVEIDAAGRVVARRPQEGLDWKVDPKSLE
Ga0075421_1002053424	3300006845	Populus Rhizosphere	MPEARIETFLYDADGNRTDDEASAVRAETVEVDAQG
Ga0075434_1012758111	3300006871	Populus Rhizosphere	MSQGEQPNRIQTFLYDAHGNRTEDESSAVRGEIVELDAEGRV
Ga0075436_1012505822	3300006914	Populus Rhizosphere	MPEARIETFLYDADGNRTDDEAAAVRAETVELDADGN
Ga0066710_1008484441	3300009012	Grasslands Soil	MSESEQPSRIETFLYDADGNRTEDESVAVRGEVVELDA
Ga0099827_113514883	3300009090	Vadose Zone Soil	MSDGEQAANRIETFLYDAEGNRTEDESVAVRGEVVELDAEGRVIAGHTHDDL
Ga0066709_1042743222	3300009137	Grasslands Soil	MSESEQPNRIETFLYDADGNRTDDESVAVRGEVVELD
Ga0111538_105538083	3300009156	Populus Rhizosphere	MSESSQPSRIETFLYDADGNRTKDESLAVRGEIVELDA
Ga0075423_105929253	3300009162	Populus Rhizosphere	MGCAMSQGEQRNRIETFLYDAHGNRTEDESSAVRGEIVELDAEGRVI
Ga0075423_116640881	3300009162	Populus Rhizosphere	VSGLSGTIAFMTTRIETILYDADGNRTDDEASAVRAETVEVDAQGNVVARRAHDSLGWEVDPISLE
Ga0134111_102467431	3300010329	Grasslands Soil	MSEGQSNRIETILYDADGNRTDDESVAVRGEVVEIDAAGRVVARRPQEGL
Ga0134122_129354252	3300010400	Terrestrial Soil	MSERPTRIETVLYDADGNRTDDESLAVRGEVVEVDDAGRVVARHP
Ga0134121_111428961	3300010401	Terrestrial Soil	VPARAADTRLETILYDADGNRTDDESVAVRGEVVEVDDAGRVVARHPDLDWEVDPISLEG
Ga0138505_1000228972	3300010999	Soil	MSDGEQVSRIETFLYDADGNRTEDEGLAVRGEVVELDAEGRVI
Ga0105246_100649241	3300011119	Miscanthus Rhizosphere	MTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAAGRVIARHEHL
Ga0120152_10719992	3300012011	Permafrost	MSGGEQTSRIETFLYDADGNRTEEESIAVRGEVVELDAEGRVIARHEHLGWEVD
Ga0137364_105613833	3300012198	Vadose Zone Soil	MSESQQPNRIETFLYDADGNRTDDESIAVRGEVVELDAEGRVIATHAHDGLGWEVDPISLKAIRA
Ga0137365_111372043	3300012201	Vadose Zone Soil	MSESEPRRIETFLYDAEGNRTDDDALAVRGETVELDAD
Ga0137370_109519632	3300012285	Vadose Zone Soil	MSESGQPSRIETRLYDADGNLTSDESIAVRGEVVELDGESRVIARHEQGGLAWQV
Ga0137366_104168221	3300012354	Vadose Zone Soil	MSEREQPSGIETFLYDADGNRTEDESVAVRGEVVELD
Ga0137371_108353062	3300012356	Vadose Zone Soil	MSESEQPGRIETFLYDADGNRTEDESVAVRGEVVELDAAGRVIARHAHDGLGWEVDP
Ga0137384_114129342	3300012357	Vadose Zone Soil	MSESDQRSRIETFLYDAEGNRTNDDALAVRGETVELDADGRVIAR
Ga0137360_100930001	3300012361	Vadose Zone Soil	MSESEQPNRIETFLYDADGNRTDDESVAVRGEVVELDAEGHVIATHVHD
Ga0157297_101595972	3300012914	Soil	MSESGHANKIETILYDADGNRTQEESIAVRAEVVELD
Ga0157302_101764001	3300012915	Soil	MSEGDRPTRIETVLFDADGNRTDDESVAVRGEIVELD
Ga0137407_110789911	3300012930	Vadose Zone Soil	MSESEQPSRIETFLYDADGNRTEDESVAVRGEVVELDAAGRVIARHA
Ga0164298_105941131	3300012955	Soil	VSDSGQPNRIETFLYDADGNRTEEESIAVRAEVVELDAEGRVIARHEQLDWEV
Ga0164303_108578211	3300012957	Soil	MSKSGQPTRVETRMYDADGNLTEDESLAVRGEVVELDAAGRVIARHRHDG
Ga0134076_105117112	3300012976	Grasslands Soil	MSESEQPGRIETFLYDADGNRTEDESVAVRGEVVELDAAGRVIARH
Ga0164308_108464781	3300012985	Soil	VSEQPSRIETFLYDADGNRTDEESIAVRGEVVELD
Ga0173483_106894381	3300015077	Soil	LSDSGQPNRIETILYDADGNRTDDESVAVRGEVVDVDDARRVVGRH
Ga0134072_103305391	3300015357	Grasslands Soil	MSEGGQPSRIETFLYDADGNRTEDESLAVRSETVELDADGHVLETRAHEGLDWQVDPK
Ga0134089_105205321	3300015358	Grasslands Soil	MSDGEQPSRLETVLYDANGNRTDDESIAVRGEVVELDASGRV
Ga0134085_103785082	3300015359	Grasslands Soil	MSEGQSNRIETILYDADGNRTEDESLAVRGETVELDAEGRVLARRTHEGLDWQV
Ga0132258_135618051	3300015371	Arabidopsis Rhizosphere	MSERPTRMETVLYDADGNRTDDESIAVRGELVELDAEGRVLARHPH
Ga0134074_11416361	3300017657	Grasslands Soil	MSESEQPGRIETFLYDADGNRTEDESVAVRGEVVELDAAGRVI
Ga0184605_104506461	3300018027	Groundwater Sediment	MSDGEQVSRIETFLYDADGNRTEDEGIAVRGEVVELD
Ga0184608_104171602	3300018028	Groundwater Sediment	MSESDQPSRIETFLYDADGHRTDDESVAVRGEVVELDA
Ga0184619_105208481	3300018061	Groundwater Sediment	MSQGEQPSRIETFLYDANGNRTEDESVAVRGEVVE
Ga0193705_10499161	3300019869	Soil	MSEGGEPTRIETFLYDADGNRTEDENVAVRGEIVE
Ga0210382_103815731	3300021080	Groundwater Sediment	MSDSEQPSRVETFLYDADGNRTEDEAVAVRGEVVELDAEGRVIARHQHLD
Ga0247674_10287151	3300024275	Soil	MSERPTRIETVLYDADGNRTDDESVAVRGEIVELDAEGRVVARRPHDGLDWKV
Ga0247660_10024971	3300024317	Soil	MSERPTRIETVLYDADGNRTDDESVAVRGEIVELDAEGRVVARRPH
Ga0207692_102974371	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSERPTRMETVLYDADGNRTDDESVAVRGELVELDAEGR
Ga0207688_100332611	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDA
Ga0207699_104622912	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSERPTRMETVLYDADGNRTDDESIAVRGELVELDAEGRVVARHPHDGLDWKVDPKSLEG
Ga0207700_103473441	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSERPTRIETVLYDADGNRTDDESVAVRGEIVELDAEGRVVARRPHDGLDWKVD
Ga0207644_106688862	3300025931	Switchgrass Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDADGRVIARHEHLD
Ga0207686_104854612	3300025934	Miscanthus Rhizosphere	MAEPRTETILYDADGNRTDDESVAVRGEVVEVDDAGRVVARHPDLDWE
Ga0207668_107454082	3300025972	Switchgrass Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAAGRVIARHEHLD
Ga0207698_100772111	3300026142	Corn Rhizosphere	MWAMTEQPSRIETFLYDADGNRTEEESIAVRGEVVELDAAGRVIARHEHLDWEVDPIS
Ga0209156_102447462	3300026547	Soil	MSDGEQPSRLETVLYDANGNRTDDESVAVRGEVVELDATGRVIARHAHDGLGWEVDPISL
Ga0209180_104815761	3300027846	Vadose Zone Soil	MSESEQPNRIETFLYDADGNRTDDESVAVRGEVVELDAEGRVIATH
Ga0207428_100455226	3300027907	Populus Rhizosphere	MGEGSQASRIETVLYDTEGNRTEDESLAVRGEVVELDEAGRVLARRPHEGLDWEVDPKS
Ga0209526_107721651	3300028047	Forest Soil	MTESKQPSRIETFLYDADGNRTEEESVAVRGEVVELDAEGRVISRHAHDDL
Ga0268266_105402574	3300028379	Switchgrass Rhizosphere	MAEPRTETILYDADGNRTDDESVAVRGEVVEVDDAGRVVARHPDLDWEVDPI
Ga0307291_10320551	3300028707	Soil	MSDSEQVSRIETFLYDADGNRTEDEGLAVRGEVVELDAEGRVIATHEH
Ga0307279_100832701	3300028709	Soil	MSDSGQPNKIETILYDADGNRTQEESIAVRGEVVELDAEGRVIARHEQLDWKVDPISLEG
Ga0307293_100210481	3300028711	Soil	MSEQPTRIETFLYDADGNRTEEESIAVRGEVVELDG
Ga0307313_100563043	3300028715	Soil	MLNRGASNSDREQPSRIETFLYDADGNRTEEESIAAPGEVVELDAEGRVIARHAHDELGCEV
Ga0307311_100169861	3300028716	Soil	VSDSEQPRRIETFLYDADGNRTEEESIAVRGEVVELDADGRVIARHEHLDWEVDPIS
Ga0307311_100301412	3300028716	Soil	MSDSGQPNKIETILYDADGNRTQEESIAVRGEVVELDAEGHIIARHEQLD
Ga0307307_100032901	3300028718	Soil	MSEQPTRIETFLYDADGNRTEEESIAVRGEVVELDGDGRVI
Ga0307317_102775112	3300028720	Soil	MSDSGQPNKIETILYDADGNRTQEESIAVRGEVVELDAEGR
Ga0307315_100199713	3300028721	Soil	MSEQPTRIETFLYDADGNRTEEESIAVRGEVVELD
Ga0307316_101562443	3300028755	Soil	MSDSEQPHRVETVLYDADGNRTQEESIAVRGEVVEL
Ga0307282_100208305	3300028784	Soil	MSDSEQVSRIETFLYDADGNRTEDEGIAVRGEVVEL
Ga0307282_105611711	3300028784	Soil	MSENEQPSRIETFLYDADGNRTEDESVAVRGEVVELDAAGR
Ga0307323_101788421	3300028787	Soil	MSDSEQVSRIETFLYDADGNRTEDEGLAVRGEVVELDAEGRVIATHEHDG
Ga0307292_102475021	3300028811	Soil	MSDSEQVSRIETFLYDADGNRTEDEGIAVRGEVVELDAEGRVVATHEHDGLSWKVDPISL
Ga0307302_102018761	3300028814	Soil	VSDSEQPRRIETFLYDADGNRTEEESIAVRGEVVELDGDGRVIARHEHLDWEVDPISLEG
Ga0307310_100237881	3300028824	Soil	MSDSEQVSRIETFLYDADGNRTEDEGIAVRGEVVELDAEGRVVATHEHDGLSWKVDPI
Ga0307312_100265011	3300028828	Soil	MSEQPTRIETFLYDADGNRTEEESIAVRGEVVELDGDGRVIARHEHLDWEVD
Ga0307312_100356501	3300028828	Soil	MSDSEQVSRIETFLYDADGNRTEDEGIAVRGEVVELDAEGRVVATHEHDGLSWK
Ga0307312_104245621	3300028828	Soil	MSDGEQVSRIETFLYDADGNRTEDEGIAVRGEVVELDAEGRVIATHAHDGLSWK
Ga0307286_100864951	3300028876	Soil	VSDSEQPRRIETFLYDADGNRTEEESIAVRGEVVELDGDG
Ga0307277_101706892	3300028881	Soil	MSDSEQVSRIETFLYDADGNRTEDEGLAVRGEVVELDAEGPRHCDA
Ga0307308_1000063713	3300028884	Soil	MSEQPTRIETFLYDADGNRTEEESIAVRGEVVELDGDGRVIARHEHLDWEVDPI
Ga0307308_100291031	3300028884	Soil	MSDSEQVSRIETFLYDADGNRTEDEGIAVRGEVVELDAEGPRRCDA
Ga0308194_100650662	3300031421	Soil	MSDSEQVSRIETFLYDADGNRTEDEGLAVRGEVVELD
Ga0310900_109003941	3300031908	Soil	MSERPTRIETVLYDADGNRTDDESVAVRGEIVELDAEGRV
Ga0310900_115141272	3300031908	Soil	MEGAMSEGSQPSRIETFLYDADGNRTDDESLAVRGE
Ga0307471_1017864462	3300032180	Hardwood Forest Soil	MSEGGRPHRIETILYDAGGNRTEDESLAVRGEVVEVDAEGRIVSRRPYA
Ga0247829_104767331	3300033550	Soil	MSEGDEPSRIETVLYDADGNRTEDENVAVRGEIVELDAAGRVLARRPHDGLDWQV
Ga0373959_0140068_1_159	3300034820	Rhizosphere Soil	MSERPTRIETVLYDADGNRTDDESVAVRGEIVELDAEGRVVTRRPHDGLDWKV
Ga0373959_0194693_354_533	3300034820	Rhizosphere Soil	MTEQRTRIETFLYDADGNRTEDENVAVRGEIVELDAAGRVLARRPHDGLDWQVDPKSLEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095095

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences