Metagenome / Metatranscriptome Family F095081

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095081
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	55 residues
Representative Sequence	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIE
Number of Associated Samples	99
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (22.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.99% β-sheet: 0.00% Coil/Unstructured: 53.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02575	YbaB_DNA_bd	64.76
PF12362	DUF3646	20.00
PF07859	Abhydrolase_3	2.86
PF13177	DNA_pol3_delta2	1.90
PF11838	ERAP1_C	1.90
PF11994	DUF3489	0.95
PF01230	HIT	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0718	DNA-binding nucleoid-associated protein YbaB/EfbC	Transcription [K]	64.76
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	2.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	88.57 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	87.62 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.62 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	5.71 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	9.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.62 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	5.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.90 %
Blastochloridaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	9.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.62 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	5.71 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.90 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	9.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.62 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	5.71 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.90 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.62 %
Rhodovulum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	5.71 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.90 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.95 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1061215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1019259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1086	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10068370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1034169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	801	Open in IMG/M
3300002568\|C688J35102_117977683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300004153\|Ga0063455_101037983	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300004281\|Ga0066397_10053815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300004633\|Ga0066395_10388517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	784	Open in IMG/M
3300005181\|Ga0066678_10416067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300005184\|Ga0066671_10980296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300005332\|Ga0066388_100389841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2039	Open in IMG/M
3300005335\|Ga0070666_10274783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	1197	Open in IMG/M
3300005344\|Ga0070661_101950315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300005354\|Ga0070675_100037764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3936	Open in IMG/M
3300005355\|Ga0070671_100006990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9041	Open in IMG/M
3300005365\|Ga0070688_100940183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300005437\|Ga0070710_10119069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	1596	Open in IMG/M
3300005445\|Ga0070708_100823384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	872	Open in IMG/M
3300005467\|Ga0070706_100595399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	1028	Open in IMG/M
3300005468\|Ga0070707_102339765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300005471\|Ga0070698_101401391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300005530\|Ga0070679_101659093	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005587\|Ga0066654_10606005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300005598\|Ga0066706_11110621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300005713\|Ga0066905_100558679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M
3300005713\|Ga0066905_101532024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300005764\|Ga0066903_107917774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300006847\|Ga0075431_100102463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2954	Open in IMG/M
3300006847\|Ga0075431_100834415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894	Open in IMG/M
3300006854\|Ga0075425_102300406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300006894\|Ga0079215_11285865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300006939\|Ga0081244_1497871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300009094\|Ga0111539_11703335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300009147\|Ga0114129_12762492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300010038\|Ga0126315_10160209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1337	Open in IMG/M
3300010041\|Ga0126312_10613097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300010041\|Ga0126312_11261408	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300010042\|Ga0126314_10289868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300010046\|Ga0126384_10823288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300010048\|Ga0126373_10889622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp.	954	Open in IMG/M
3300010304\|Ga0134088_10532921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300010337\|Ga0134062_10642152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300010358\|Ga0126370_12533680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300010359\|Ga0126376_13016212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300010360\|Ga0126372_10433771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1211	Open in IMG/M
3300010360\|Ga0126372_10442040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1202	Open in IMG/M
3300010360\|Ga0126372_11642187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300010366\|Ga0126379_13706131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300010863\|Ga0124850_1093405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300012354\|Ga0137366_10470366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300012383\|Ga0134033_1219499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300014150\|Ga0134081_10079997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1009	Open in IMG/M
3300014254\|Ga0075312_1050061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	794	Open in IMG/M
3300018055\|Ga0184616_10179220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300018431\|Ga0066655_10023993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2884	Open in IMG/M
3300018431\|Ga0066655_10614920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300018468\|Ga0066662_10937400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300018482\|Ga0066669_10734820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300020016\|Ga0193696_1066867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	938	Open in IMG/M
3300021082\|Ga0210380_10166543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	991	Open in IMG/M
3300021968\|Ga0193698_1023013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300025907\|Ga0207645_10601051	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300025918\|Ga0207662_10035289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2920	Open in IMG/M
3300025931\|Ga0207644_10066567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2623	Open in IMG/M
3300025944\|Ga0207661_10139194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2087	Open in IMG/M
3300025945\|Ga0207679_11344832	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300025986\|Ga0207658_10749732	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300026310\|Ga0209239_1157602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	891	Open in IMG/M
3300026332\|Ga0209803_1290607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300026494\|Ga0257159_1018359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300026498\|Ga0257156_1022486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1257	Open in IMG/M
3300027061\|Ga0209729_1053172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300027655\|Ga0209388_1052442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1177	Open in IMG/M
3300027815\|Ga0209726_10397081	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027873\|Ga0209814_10270275	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300027903\|Ga0209488_10762041	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300028708\|Ga0307295_10059816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	991	Open in IMG/M
3300028754\|Ga0307297_10143711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300028799\|Ga0307284_10277009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300028810\|Ga0307294_10092820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300028814\|Ga0307302_10233294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900	Open in IMG/M
3300028875\|Ga0307289_10148172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	964	Open in IMG/M
3300028884\|Ga0307308_10386788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300031091\|Ga0308201_10082138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300031123\|Ga0308195_1050967	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031199\|Ga0307495_10047050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300031231\|Ga0170824_108096008	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031455\|Ga0307505_10317853	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300031544\|Ga0318534_10494539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	699	Open in IMG/M
3300031545\|Ga0318541_10809580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300031546\|Ga0318538_10265139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	923	Open in IMG/M
3300031573\|Ga0310915_10192228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1425	Open in IMG/M
3300031668\|Ga0318542_10561751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031679\|Ga0318561_10629842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300031724\|Ga0318500_10663974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031748\|Ga0318492_10054325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1878	Open in IMG/M
3300031763\|Ga0318537_10018137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2433	Open in IMG/M
3300031781\|Ga0318547_10637414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300031819\|Ga0318568_10813165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300031880\|Ga0318544_10061092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1376	Open in IMG/M
3300031912\|Ga0306921_10985894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	951	Open in IMG/M
3300032001\|Ga0306922_10169875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2336	Open in IMG/M
3300032068\|Ga0318553_10378186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300032174\|Ga0307470_11258030	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300032261\|Ga0306920_100763771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1421	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.67%
Host-Associated	Host-Associated	13.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.81%
Plants	Host-Associated → Plants	13.33%
Aquatic	Environmental → Aquatic	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.33%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.76%
Loam	Environmental → Terrestrial → Soil → Loam	18.10%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.95%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006939	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10612151	3300000579	Forest Soil	VEQDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETAMAEMAPGIE
AF_2010_repII_A01DRAFT_10192591	3300000580	Forest Soil	VEQDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETAMAEMAPGIEDKRALFGL
AF_2010_repII_A001DRAFT_100683703	3300000793	Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEM
AP72_2010_repI_A001DRAFT_10341693	3300000893	Forest Soil	VEQDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETAMAEMAPGIEDKRAL
C688J35102_1179776832	3300002568	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMA
Ga0063455_1010379832	3300004153	Soil	MEEGVEKEVDTQALSAAIAGFLACHVLTCRFLVHEGIVDKDRFTAYLETAIAE
Ga0066397_100538151	3300004281	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLETAMAEMAPGIEDKRTLFSL
Ga0066395_103885173	3300004633	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPG
Ga0066678_104160671	3300005181	Soil	MNKDVDPQALSAAVAGFLACHVLTCRFLVQEGTVDRERFIAYLETAIDEMSPGIEDKRALFSLN
Ga0066671_109802962	3300005184	Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDGDRFTAYLESAMAEMAPGIE
Ga0066388_1003898413	3300005332	Tropical Forest Soil	MSKDVDPQALSAAIAGFLACHVLTCRFLVQEGLVDRERFIAYLEAAIAEMSPGIEDKRALFSLN
Ga0070666_102747831	3300005335	Switchgrass Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSAYLETAMAEMAPGI
Ga0070661_1019503151	3300005344	Corn Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEM
Ga0070675_1000377641	3300005354	Miscanthus Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETA
Ga0070671_1000069901	3300005355	Switchgrass Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDKRTLFS
Ga0070688_1009401833	3300005365	Switchgrass Rhizosphere	MPVDQEIDTKALSAAIAGFLACHILTCRFLVREGVIDKDRFTSFLETAMTEMAPGIEDK
Ga0070710_101190691	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDKRTLFSLR
Ga0070708_1008233843	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VEKDIDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIEDKRALFGL
Ga0070706_1005953991	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VEKDVDVQALSAAIAGFLACHVLTCRFLVQEGLVEKDRFTAYLETAMAEMAPGI
Ga0070707_1023397651	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VEKDVDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLETAMAEM
Ga0070698_1014013912	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VEKDIDMQALSAAIAGFLACHVLTCRFLVQEGVLDKDRFTAYLESAMAEMA
Ga0070679_1016590932	3300005530	Corn Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGLVDQDRFSSYLETAMAEMAPGIEDK
Ga0066654_106060051	3300005587	Soil	MNKDVDPQALSAAIAGFLACHVLTCRFLVQEGIVDRERFIAYLETAIAEMSPGIEDKR
Ga0066706_111106211	3300005598	Soil	MNKDVDPQALSAAVAGFLACHVLTCRFLVQEGIVDRERFIAYLETAIEEMSPGIEDKRALFSLN
Ga0066905_1005586793	3300005713	Tropical Forest Soil	MEKNIDLEALSAAVAGFLACHVLTCRFLAQEGVIDKDRFVDYLENAM
Ga0066905_1015320242	3300005713	Tropical Forest Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAM
Ga0066903_1079177741	3300005764	Tropical Forest Soil	MSKDVDPQALSAAIAGFLACHVLTCRFLVQEGLVDRERFIAYLEAAIAEMSPGIE
Ga0075431_1001024634	3300006847	Populus Rhizosphere	VEKDINTEALSAAIAGFLACHVLTCRFLVQEGVVDQDRFTAYLETAMAEMAPGIEDK
Ga0075431_1008344153	3300006847	Populus Rhizosphere	MDKKVDLEALSAAVAGFLACHVLTCRFLAQEGVIDKERFVAYLENAMVEMAPGVD
Ga0075425_1023004061	3300006854	Populus Rhizosphere	VEKDIDRQALSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLESAMAEMAPGIE
Ga0079215_112858651	3300006894	Agricultural Soil	MPVDQEIDTKALSAAIAGFLACHILTCRFLVQEGVIDKDRFTSFLEMAMTEMAPGIEDKR
Ga0081244_14978713	3300006939	Tropical Rainforest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIEDKR
Ga0111539_117033351	3300009094	Populus Rhizosphere	VEKEIDAQALSAAIAGFLACHILTCRFLVHEGVIDKDRFAAYLEAAMTEMAPGIE
Ga0114129_127624921	3300009147	Populus Rhizosphere	MEEIMDKEIDTQALSAAIAGFLACHVLTCRFLAQEGVIDKDRFTAYLETAMTEMGPGIEDKRTLF
Ga0126315_101602091	3300010038	Serpentine Soil	MTTNLDPQAISAAMAGFLACHVLTCRFLIEQGVVDKAKFAAFLERAMAEMAPGIEDQRALFPLNH
Ga0126312_106130971	3300010041	Serpentine Soil	VEKDIDMQTLSAAIAGFLACHVLTCRFLVQEGVVDKDRFAAYLETAMAEMAPGIEDKRT
Ga0126312_112614082	3300010041	Serpentine Soil	VEKKVDVEALSAAIAGFLACHVLTCRFLVQEGVIDQERFVAFLEKAMAEMSPGLED
Ga0126314_102898681	3300010042	Serpentine Soil	MEEGVEKEVDTQALSAAIAGFLACHVLTCRFLVHEGIVDKDRFTAYLETAIAEMSPG
Ga0126384_108232883	3300010046	Tropical Forest Soil	LEKDIDMEALSAAIAGFLACHILTCRFLVQEGVVDKDRFSAYLEAAMTEMTPGIEDKRTLFSLGQ
Ga0126373_108896221	3300010048	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIE
Ga0134088_105329212	3300010304	Grasslands Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDSDRFTAYLESAMAEMAPG
Ga0134062_106421521	3300010337	Grasslands Soil	MNKDVDPQALSAAVAGFLACHVLTCRFLVQEGLVDRERFIAYLEAAIAEMSPGIED
Ga0126370_125336801	3300010358	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAM
Ga0126376_130162122	3300010359	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAI
Ga0126372_104337711	3300010360	Tropical Forest Soil	VDKKLDVEAMSAAIAGFLACHVLTCRFLVQEGVIDADRFVAFLETAMEEMSPGLEDQRSLFGLN
Ga0126372_104420401	3300010360	Tropical Forest Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLETAMAEMAPGIEDKRTLFSLR
Ga0126372_116421871	3300010360	Tropical Forest Soil	MEESVDKKVDVEALSAAIAGFLACHVLTCRFLVQEGVIDKDRFVAYLEN
Ga0126379_137061311	3300010366	Tropical Forest Soil	VEQDIDMQALSAVIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETA
Ga0124850_10934051	3300010863	Tropical Forest Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMEEMAPGIEDQRALFVRFA
Ga0137366_104703663	3300012354	Vadose Zone Soil	VEKDVDVQAVSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLETAMAEMAPG
Ga0134033_12194992	3300012383	Grasslands Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDSDRFTAYLESAMAEMAP
Ga0134081_100799971	3300014150	Grasslands Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDSDRFTAYLESAMAEMAPGIEDQRTL
Ga0075312_10500613	3300014254	Natural And Restored Wetlands	MEKKVDLEALSAAIAGFLACHVLTCRFLAQEGIIDKERFVAYLENAMVEM
Ga0184616_101792203	3300018055	Groundwater Sediment	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDK
Ga0066655_100239934	3300018431	Grasslands Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDSDRFTAYLESAMA
Ga0066655_106149202	3300018431	Grasslands Soil	MNKDVDPQALSAAIAGFLACHVLTCRFLVQEGIVDRERFIAYLETAIEEMS
Ga0066662_109374003	3300018468	Grasslands Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTGYLETAMAGVGRGLEVKR
Ga0066669_107348201	3300018482	Grasslands Soil	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIEDK
Ga0193696_10668671	3300020016	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQQGVVDQERFSSYLETAMAEMAPGIE
Ga0210380_101665433	3300021082	Groundwater Sediment	VEKDVDMQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSVYLETAM
Ga0193698_10230133	3300021968	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQQGVVDQDRFSSYLETAMAEMAPGIEDKRT
Ga0207645_106010511	3300025907	Miscanthus Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSAYLETAMAEMAPGIEDKRTLFSLR
Ga0207662_100352891	3300025918	Switchgrass Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSAYLETAMAEMA
Ga0207644_100665671	3300025931	Switchgrass Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGLVDQDRFSSYLETAMAEMAPGI
Ga0207661_101391943	3300025944	Corn Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIED
Ga0207679_113448322	3300025945	Corn Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDKRT
Ga0207658_107497321	3300025986	Switchgrass Rhizosphere	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSAYLETAMAEMAP
Ga0209239_11576021	3300026310	Grasslands Soil	MNKDVDPQALSAAVAGFLACHVLTCRFLVQEGIVDRERFIAYLETAIDEM
Ga0209803_12906071	3300026332	Soil	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIED
Ga0257159_10183591	3300026494	Soil	VEKDIDMQALSAAIAGFLACHVLTCRFLVQEGVLDKDRFTAYLESAMAEMAPG
Ga0257156_10224861	3300026498	Soil	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVLDKDRFTAYLESAMAEMAP
Ga0209729_10531722	3300027061	Forest Soil	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIE
Ga0209388_10524421	3300027655	Vadose Zone Soil	VEKDVDMQAVSAAIAGFLACHVLTCRFLVQEGVVDKDRFTAYLETAMAEMAPGIEDKRAL
Ga0209726_103970811	3300027815	Groundwater	MENLVDNDNKVDLQSLSAAIAGFLALHVLTCRFLVQEGVIDKERFTAYLETAMAEMSPDIEDQRALFGLH
Ga0209814_102702751	3300027873	Populus Rhizosphere	VEKDIDMQTLSAAIAGFLACHVLTCRFLVQEGVVDKDRFAAYLESAMAEMAPGIED
Ga0209488_107620411	3300027903	Vadose Zone Soil	VEKEIDMQALSAAVAGFLACHILTCRFLVQEGVIDKDRFAAYLETAMTEMAPGIEDQRT
Ga0307295_100598163	3300028708	Soil	VEKDVDMQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSVYLETAMAEMAPGIEDKRTL
Ga0307297_101437111	3300028754	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAM
Ga0307284_102770092	3300028799	Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLAQEGVVDRDRFTAYLETAMAEMAPGIEDQRALFGL
Ga0307294_100928201	3300028810	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQQGVVDQDRFSSYLETAMAEMAPGIEDKRTLFSLR
Ga0307302_102332941	3300028814	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQQGVVDQDRFSSYLETAMAEM
Ga0307289_101481723	3300028875	Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLAQEGVVDRDRFTAYLETAMAEMAPGIE
Ga0307308_103867881	3300028884	Soil	VEKDIDMQAVSAAIAGFLACHVLTCRFLAQEGVVDRDRFTAYLETAMAEMAPGIEDQ
Ga0308201_100821383	3300031091	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDKR
Ga0308195_10509672	3300031123	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGI
Ga0307495_100470503	3300031199	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAPGIEDKRTLFSL
Ga0170824_1080960081	3300031231	Forest Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQQGVVDQDRFSSYLETAMAEMAP
Ga0307505_103178531	3300031455	Soil	VEKDVDVQALSAAIAGFLACHILTCRFLVQEGVVDQDRFSSYLETAMAEMAP
Ga0318534_104945391	3300031544	Soil	VEQDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETAMAEMAPGIEDKRALLGLR
Ga0318541_108095802	3300031545	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIED
Ga0318538_102651393	3300031546	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMA
Ga0310915_101922281	3300031573	Soil	VEQDIDMQALSAAIAGFLACHVLTCRFLAQEGVVDKDRFTAYLETAMAEMAP
Ga0318542_105617511	3300031668	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIEDKRTLFGLR
Ga0318561_106298422	3300031679	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIEDKRTL
Ga0318500_106639741	3300031724	Soil	VEKDIDLQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMA
Ga0318492_100543251	3300031748	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAA
Ga0318537_100181373	3300031763	Soil	VEKDVDVQAWSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLETAMAEMAPGI
Ga0318547_106374141	3300031781	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTASLETA
Ga0318568_108131651	3300031819	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIEDKRT
Ga0318544_100610923	3300031880	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAE
Ga0306921_109858941	3300031912	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAHLEAAMAEMAPGI
Ga0306922_101698753	3300032001	Soil	VEKDIDLQALSAAIAGFLACHVLTCRFLVQERVVEKDRFTAYLEAAMAEMAPGIEDKRTLFGL
Ga0318553_103781863	3300032068	Soil	VEKDIDVQALSAAIAGFLACHVLTCRFLVQEGVVEKDRFTAYLEAAMAEMAPGIEDKRTLFGL
Ga0307470_112580301	3300032174	Hardwood Forest Soil	VEKDVDMQALSAAIAGFLACHILICRFLVQEGVVDQDRFSSYLETAMA
Ga0306920_1007637711	3300032261	Soil	MSKDVDPQALSAAIAGFLACHVLTCRFLVKEGLVDRERFIAYLEAAIAEMSPGIEDKRALFSLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095081

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences