Basic Information | |
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Family ID | F095005 |
Family Type | Metagenome |
Number of Sequences | 105 |
Average Sequence Length | 59 residues |
Representative Sequence | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 95.19 % |
% of genes near scaffold ends (potentially truncated) | 14.29 % |
% of genes from short scaffolds (< 2000 bps) | 77.14 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (65.714 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (48.571 % of family members) |
Environment Ontology (ENVO) | Unclassified (62.857 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) (58.095 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.19% β-sheet: 0.00% Coil/Unstructured: 52.81% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Freshwater Microbial Mat Groundwater Soil Groundwater Sediment Soil Vadose Zone Soil Agricultural Soil Agricultural Soil Soil Hardwood Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Deep Subsurface Sediment Sediment Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10214J12806_108795292 | 3300000891 | Soil | MTSRLQFELFMREMRAQAARKRPMQQALANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0070692_100105645 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | MTSRLQFELFMREKRAQVSDKQLPQVTQANRQPAESEDVGAVRLSRIEAAMKERRAARAGK* |
Ga0070674_1012020712 | 3300005356 | Miscanthus Rhizosphere | MTSRLHFELFLKEMRLRAGVAEPKQLALSGLHPDEVEDVGAVRLSRIEAAMKEARAARVEE* |
Ga0070705_1009514202 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MTSRLQFELFMREMRAQAADERPSQVQFANRYPAETEDVGAVRLSRIEAAIKETRAARTGK* |
Ga0066682_101889642 | 3300005450 | Soil | MTSRLQFELFMREMRAQAASKRPTQPPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0079218_119303432 | 3300007004 | Agricultural Soil | MTSRLHFELFLKELRARAGLGEPTQLALGGLHPEDGEDVGAVRLSRIEAAMKEARAARVEE* |
Ga0105106_108512342 | 3300009078 | Freshwater Sediment | MTSRLQFELFMREMRAQGAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105107_109369052 | 3300009087 | Freshwater Sediment | MTSRLHFELFLKEMRLRAGIAEPKQLALTGLHPDELDDVGAVRLSRIEAAMKEARAARIEE* |
Ga0099830_101727831 | 3300009088 | Vadose Zone Soil | MTSRLQFELFMREMRAQATNKRPTQLPLANLHPEETEDVGALRLSRIEAAMKETRAARAGK* |
Ga0079224_1010688142 | 3300009095 | Agricultural Soil | MTSRLRFELFLKEMRERAEAEAPRQLALNGLHPEEVEDVGAVRLSRIEAAMKEARAARVEK* |
Ga0114942_10912991 | 3300009527 | Groundwater | ELFMREMRVQVAGKRPTQPPPANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105259_10025503 | 3300009597 | Soil | MTSRLQFELFMREMRAQVAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105347_11661462 | 3300009609 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLPLANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105340_10125383 | 3300009610 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVLLDLIEAAMKETRAARAGK* |
Ga0105340_11010552 | 3300009610 | Soil | MTSRLQFELFMRDMRAQTAAKRPTQLALAIRHPEQTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105252_101273981 | 3300009678 | Soil | MTSRLQFELFMRKMRAQVAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0105252_103736922 | 3300009678 | Soil | MTSRLRFELFMREMRAQGAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137315_10112322 | 3300011395 | Soil | MTSRLQFELFMHELRAQAAHKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137315_10594451 | 3300011395 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137348_10749061 | 3300011398 | Soil | MTSRLQLELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137466_10013643 | 3300011399 | Soil | MTSRLQFELFMREMRAQGASKRPTQLPPANLHPEETEDVGAVRLSRIEAAIKETRAARAGK* |
Ga0137356_10082742 | 3300011402 | Soil | MTSRLQFELFMREMRAQGAGKRPTRLPLANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137313_11067892 | 3300011403 | Soil | QFELFMREMRAQGAGKRPTQRPLANLHPEETEDDGAVRLSRIEAAMKETRAARAGK* |
Ga0137323_10139612 | 3300011409 | Soil | MTSRLQFELFTREMRAQGAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137440_10008063 | 3300011410 | Soil | MTSRLQFELFMREMRAQGAGPRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137446_11425752 | 3300011419 | Soil | MREMRAQAANKRPTQLPLANLHREETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137462_10543302 | 3300011421 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLPLANLHPEESEDVGAVRLSRIEAAIKETRAARAGK* |
Ga0137462_11709031 | 3300011421 | Soil | MTSRLQFELFMRDMRAQAAAKRPTQLALAIRHPEQTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137439_10201242 | 3300011424 | Soil | MTSRLQFELFMREMRAQGASKRPTQLPPANLHPEETEDVGAVRLSRIEAAMKE |
Ga0137439_10904882 | 3300011424 | Soil | MTSRLHFELFMKEMRVRSSVAEPRQLVLHGLHPDELEDVGAVRLSRIEAAMKEARAARVEE* |
Ga0137456_10863541 | 3300011428 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPPATLHPEQTEDVGAVRLSRIEAAMKE |
Ga0137423_10252102 | 3300011430 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLAPANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137458_10668591 | 3300011436 | Soil | RLQFELFMRKMRAQVAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137432_12143212 | 3300011439 | Soil | MTSRLQFELFMREMRAQGAGKRPTQPPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137427_100369484 | 3300011445 | Soil | MTSRLQFELFLREMRAQAASKRPKQLPLTNLHPEDTKDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137427_101193521 | 3300011445 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKET |
Ga0137445_10527402 | 3300012035 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPPATLHPEQTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137461_10061342 | 3300012040 | Soil | MTSRLRFELFMREMRAQAANKRPIQLPLANLRPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137461_12354371 | 3300012040 | Soil | MTSRLQFELFLREMRAQAASKRPKQLPLTNLHPEDTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137430_10483812 | 3300012041 | Soil | MTSRLQFELFMRKMRAQVAGKRPTQLPLANLHPEESEDVGAVRLSRIEAAIKETRAARAGK* |
Ga0137329_10064982 | 3300012133 | Soil | MREMRAQAANKRPTQLPHASLHPEQTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137349_10198692 | 3300012160 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLPLAKLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137350_10272592 | 3300012166 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137320_10235092 | 3300012172 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLAPANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137327_10095052 | 3300012173 | Soil | MTSRLQFELFMREMRAQAAGKRPAQLPLAKLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137363_113449871 | 3300012202 | Vadose Zone Soil | MTSRLQFELFMREMRAQAASKRPTQPPLANLHPKETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0137399_101097753 | 3300012203 | Vadose Zone Soil | MTSRLQFELFMREMRAQAANKGPKRLPLANLHPEQTEDVGALRLSRIEAAMKETRAARAGK* |
Ga0137447_11012241 | 3300012226 | Soil | MTSRLQFELFMREMRAQAANKRPTQLPLANLHPEETEDVGAVRLSRIEA |
Ga0137341_10259093 | 3300012676 | Soil | MTSRLQFELFMRKMRAQVAGKRPTQLPLANLHPEETEDVGAVRLSRIKAAMKETRAAR |
Ga0137397_100038486 | 3300012685 | Vadose Zone Soil | MTSRLQFELFMREMRAQAANKGPKQLPLANLHPEQTEDVGALRLSRIEAAMKETRAARAGK* |
Ga0137359_100010978 | 3300012923 | Vadose Zone Soil | MTSRLQFELFMREMRAQAPNKGPKQLPLANLHPEQTEDVGALRLSRIEAAMKETRAARAGK* |
Ga0137416_102757042 | 3300012927 | Vadose Zone Soil | MTSRLQFELFMREMRAQAVNKRPTQPPLANLHPEETEDVGALRLSRIEAAMKETRAARAGK* |
Ga0137410_100137954 | 3300012944 | Vadose Zone Soil | MTSRLQFELFMREVRAQAANKGPKQLPLANLHPEQTEDVGALRLSRIEAAMKETRAARAGK* |
Ga0180068_10141512 | 3300014864 | Soil | MTSRLQFELFMREMRAQGASKRPTQLPPANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180078_10055371 | 3300014865 | Soil | SRLQFELFMREMRAQVAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180080_10084832 | 3300014870 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPPANLHPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180087_10866923 | 3300014872 | Soil | MTSRLQFELFMREMRAQGAGKRPIQMPLANLHPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180066_10585932 | 3300014873 | Soil | MREMRAQAANKRPIQLPLANLRPEETEDVGAVHLSRIEAAMKDTRAARAGK* |
Ga0180083_10418471 | 3300014875 | Soil | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMK |
Ga0180074_10290142 | 3300014877 | Soil | MTSRLQFELFMREMRAQAANKRPIRLPLANLHPEETEDVGAVRLSRIKAAMKETRAARAGK* |
Ga0180065_11340191 | 3300014878 | Soil | MREMRAQAANKRPIQLPLANLRPEETEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180069_10310591 | 3300014882 | Soil | MTSRLQFELFMREMRAQAASKGPTQLTLANLYPADTEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180086_10360032 | 3300014883 | Soil | MTSRLQFELFMREMRAQGAGKRPTQLAPANLHPEETEDVGAVRLSRIEAAMKERRAARAGK* |
Ga0137411_10271122 | 3300015052 | Vadose Zone Soil | EMRAQAANKGPKQLPLANLHPEQTEDVGALRLSRIEAAMKETRAARAGK* |
Ga0137418_100306673 | 3300015241 | Vadose Zone Soil | MTSRLQFELFMREMRAQAASKRPTQPPLANMHAEETEDVGAVRLSRIEAAMRETRAARAGK* |
Ga0180079_10729941 | 3300015248 | Soil | MTSRLRFELFMREMRAQGAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARA |
Ga0180071_10023672 | 3300015249 | Soil | MTSRLQFELFMREMRAQGAGKRPRQLPLAYLQPEESEDVGAVRLSRIEAAMKETRAARAGK* |
Ga0180089_10069773 | 3300015254 | Soil | MTSRLQFELFMREMRAQAANKRPIRLPLANLHPEETEDVGAVRLSRIEAA |
Ga0180073_10131861 | 3300015256 | Soil | MTSRLQFELFMREMRAQAASKRPTQLPLANLYPEDTEDVGAVRLSRIEAAMKDTRAARAGK* |
Ga0163144_100030315 | 3300015360 | Freshwater Microbial Mat | MKEMRVRAGVAEPKQLVLHGLHPDELEDVGAVRLSRIEAAMKEARAARVEE* |
Ga0184623_101729132 | 3300018056 | Groundwater Sediment | MTSRLQFELFMREMRAQAANKGPTQPPLANPHPEQTEDVGAVRLSRIEAAMKETRAARAG |
Ga0184637_100035907 | 3300018063 | Groundwater Sediment | MTSRLQFELFMREMRAQAASKRPTQLPLANLHREETEDVGAVRLSRIEAAMKETRAARAG |
Ga0184618_100126913 | 3300018071 | Groundwater Sediment | MTSRLQFELFIREMRAQAANKRSMQRPLTNRHPEEDVGAVRLSRIEAAMKETRAARAGK |
Ga0184640_100576331 | 3300018074 | Groundwater Sediment | MTSRLQFELFMREMRAQAANKRPTQLPLANLHPGETEDVGAVRLSRIEAAMKETRAARAG |
Ga0184639_102766172 | 3300018082 | Groundwater Sediment | MTSRLQFELFMREMRAQAANKRPTQLPLVNLHPEQTEDVGAVRLSRIEAAMKETRAARAG |
Ga0190272_101137842 | 3300018429 | Soil | MTSRLQFELFMREMRAQAATKQPTQLALANWHPEETEDVGAVRLSRIEAAIKETRASRAG |
Ga0190272_131343742 | 3300018429 | Soil | MTSRLHFELFLKEMRVRAGIAEPKQLVLSGLHPDEFEDVGAVRLSRLEAAMKEARATRVE |
Ga0190270_100092824 | 3300018469 | Soil | MTSRLHFELFLKEMRLRAGVAEPKQLALSGLHPDEVEDVGAVRLSRIEAAMKEARAARVE |
Ga0190270_106209093 | 3300018469 | Soil | MTSRLQFELFMREMRAQGAGKRPTQPPLANLHPEETEDVGAVRLSRIEAAMKETRAARAG |
Ga0190274_100398472 | 3300018476 | Soil | MTSRLHFELFMKEMRLRAGVAEPKQLALSGLHPDEVEDVGAVRLSRIEAAMKEARAGRVE |
Ga0190264_108996192 | 3300019377 | Soil | MTNRLHFELFMKEMRVRTGIAEPQQLALNGMHPDGVEDVGAVRLSRIEAAMKEARAARVE |
Ga0163151_1000012223 | 3300020057 | Freshwater Microbial Mat | MTSRLHFELFMKEMRVRAGVAEPKQLVLHGLHPDELEDVGAVRLSRIEAAMKEARAARVE |
Ga0179594_101939432 | 3300020170 | Vadose Zone Soil | MTSRLQFELFMREMRAQAASKRPTQPPLANLHAEETEDVGAVRLSRIEAAMRETRAARAG |
Ga0210379_101423832 | 3300021081 | Groundwater Sediment | MTSRLQFELFMREMRAQAAGKRPTQLPPATLHPEQTEDVGAVRLSRIEAAMKETRAARAG |
Ga0210377_101517152 | 3300021090 | Groundwater Sediment | MTSRLRFELFMREMRAQAANKRPIQLPLANLRPEETEDVGAVRLSRIEAAMKETRAARAG |
Ga0210377_105993372 | 3300021090 | Groundwater Sediment | MTSRLQFELFMREMRAQAANKRPTQLPLANLHREETEDVGAVRLSRIEAAMKETRAARAG |
Ga0233392_10010042 | 3300024241 | Deep Subsurface Sediment | MTSRLQFELFMREMRAQAASKRPTQLPLANLYPEDTEDVGAVRLSRIEAAMKETRAARAG |
Ga0209640_100357882 | 3300025324 | Soil | MTSRLRFELFMRELRAQAPNKRPIQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAG |
Ga0208454_10201562 | 3300027573 | Soil | MTSRLRFELFMREMRAQGAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAG |
Ga0209701_101975372 | 3300027862 | Vadose Zone Soil | MTSRLQFELFMREMRAQATNKRPTQLPLANLHPEETEDVGALRLSRIEAAMKETRAARAG |
Ga0137415_100879012 | 3300028536 | Vadose Zone Soil | MTSRLQFELFMREMRAQAVNKRPTQPPLANLHPEETEDVGALRLSRIEAAMKETRAARAG |
Ga0307469_115457522 | 3300031720 | Hardwood Forest Soil | MTSRLQFELFMREMRAQAARKRPTQPPLANLHPEETEDVGAVRLSRIEAAMKETRAARAG |
Ga0307473_103932222 | 3300031820 | Hardwood Forest Soil | MTSRLQFELFMRKMRAQGVNKQPTQPPLANSHSEETEDVGALRLSRIEAAMKETRAARAG |
Ga0315910_100018748 | 3300032144 | Soil | MTSRLHFELFLKDLRERMGADAPRQLTLSGLHPEEVEDVGAVRLSRIEAAMKEARAARVE |
Ga0315910_105852411 | 3300032144 | Soil | MTSRLHFELFLKELRERADALAPRQLVLNVLHPEEAEDVGAVRLSRLEAAMKEARATRVE |
Ga0315912_107038742 | 3300032157 | Soil | MTSQLHFELFLKEMRMRAGTAEPKQLALRGLHPDELEDVGAVRLSHLEAAMKEARAARIE |
Ga0315912_108221912 | 3300032157 | Soil | MTSRLHFELFMKDLRERALRDAPKQLVLAGMHLEEQEDVGAVRLSRIEAAMKDARAARLD |
Ga0307471_1003651612 | 3300032180 | Hardwood Forest Soil | MTSRLQFELFMRKMRAQAVNKRPTQPPLANSHSEETEDVGALRLSRIEAAMKETRAARAG |
Ga0364924_053240_188_373 | 3300033811 | Sediment | MTSRLQFELFMREMRARAASKRPTQLPLANLHREETEDVGAVRLSRIEAAMKETRAARPR |
Ga0364928_0005585_974_1159 | 3300033813 | Sediment | MTSRLQFELFMREMRAQAANKRPTQLPLANLHSEMTEDVGAVRLSRIEAAMKETRAARAG |
Ga0364930_0009705_747_932 | 3300033814 | Sediment | MTSRLQFELFMREMRAQAASKGPTQLTLANLYPADTEDVGAVRLSRIEAAMKDTRAARAG |
Ga0364930_0279849_83_268 | 3300033814 | Sediment | MTSRLQFELFMREMRAQAASKRPTQLLLANLYPEDTEDVGAVRLSRIEAAMKETRAARAG |
Ga0364938_002960_1324_1509 | 3300034114 | Sediment | MTSRLQYELFMREMRAQAASKRPTQLPLANLYPEDTEDVGAVRLSRIEAAMKETRAARVK |
Ga0364940_0019736_948_1133 | 3300034164 | Sediment | MTSRLQFELFMREMRAQAANKRPTQLPLANLHPEQTEDVGAVRLSRIEAAMKETRAARVK |
Ga0364931_0124966_568_753 | 3300034176 | Sediment | MTSRLQFELFMREMRAQAAGKRPTQLPLANLHPEETEDVGAVRLSRIEAAMKETRAARAG |
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