Metagenome Family F095003

Overview

Basic Information

• Family ID: F095003
• Family Type: Metagenome
• Number of Sequences: 105
• Average Sequence Length: 59 residues
• Representative Sequence: MDYGIGMFLAGLVSGAGIGWYSGILRERIRQTDPKKSKRESNFYRHLLYKAGLSEDGDKGE
• Number of Associated Samples: 53
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 74.04 %
• % of genes near scaffold ends (potentially truncated): 20.95 %
• % of genes from short scaffolds (< 2000 bps): 81.90 %
• Associated GOLD sequencing projects: 45
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (58.095 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment (30.476 % of family members)
• Environment Ontology (ENVO): Unclassified (55.238 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (34.286 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.19%
  β-sheet: 0.00%
  Coil/Unstructured: 52.81%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02599	CsrA	6.67
PF16677	GP3_package	3.81
PF12833	HTH_18	3.81
PF00929	RNase_T	1.90
PF12625	Arabinose_bd	1.90
PF12161	HsdM_N	1.90
PF13683	rve_3	1.90
PF00565	SNase	0.95
PF00990	GGDEF	0.95
PF13229	Beta_helix	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	6.67
COG0732	Restriction endonuclease S subunit	Defense mechanisms [V]	0.95
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.95

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	41.90 %
Unclassified	root	N/A	58.10 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	41.90 %
Unclassified	root	N/A	58.10 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.90 %
Unclassified	root	N/A	58.10 %

Level 4

Name	Rank	Taxonomy	Distribution
Fusobacteria	phylum	All Organisms → cellular organisms → Bacteria → Fusobacteria	0.95 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Unclassified	root	N/A	58.10 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %
Fusobacteriia	class	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	15.24 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.95 %
Unclassified	root	N/A	58.10 %

Level 6

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Fusobacteriales	order	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales	0.95 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.95 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.95 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.95 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.95 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	1.90 %
Unclassified	root	N/A	58.10 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.81 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.95 %

Level 7

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.95 %
Chromatiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiales incertae sedis	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.95 %
Fusobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.95 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	0.95 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.95 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.95 %
Unclassified	root	N/A	58.10 %
unclassified Thiotrichales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales	1.90 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.95 %

Level 8

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Candidatus Magnetobacterium	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.95 %
endosymbiont of Lamellibrachia luymesi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → endosymbiont of Lamellibrachia luymesi	0.95 %
Fusobacterium	genus	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Oceanospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Oceanospirillum	0.95 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.95 %
Thiohalobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiales incertae sedis → Thiohalobacter	0.95 %
Thiorhodovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio	0.95 %
Thiotrichales bacterium SG8_50	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium SG8_50	1.90 %
Unclassified	root	N/A	58.10 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.95 %

Level 9

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Candidatus Magnetobacterium bavaricum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Desulfospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira	0.95 %
endosymbiont of Lamellibrachia luymesi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → endosymbiont of Lamellibrachia luymesi	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Oceanospirillum multiglobuliferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Oceanospirillum → Oceanospirillum multiglobuliferum	0.95 %
Thiohalobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiales incertae sedis → Thiohalobacter	0.95 %
Thiorhodovibrio winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio → Thiorhodovibrio winogradskyi	0.95 %
Thiotrichales bacterium SG8_50	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium SG8_50	1.90 %
Unclassified	root	N/A	58.10 %
unclassified Fusobacterium	no rank	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → unclassified Fusobacterium	0.95 %
unclassified Ruegeria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria	0.95 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.95 %

Level 10

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Candidatus Magnetobacterium bavaricum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Desulfospira joergensenii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfospira → Desulfospira joergensenii	0.95 %
endosymbiont of Lamellibrachia luymesi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → endosymbiont of Lamellibrachia luymesi	0.95 %
Fusobacterium sp. CM1	species	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → unclassified Fusobacterium → Fusobacterium sp. CM1	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Oceanospirillum multiglobuliferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Oceanospirillum → Oceanospirillum multiglobuliferum	0.95 %
Ruegeria sp. Alg231-54	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria → Ruegeria sp. Alg231-54	0.95 %
Thiohalobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiales incertae sedis → Thiohalobacter	0.95 %
Thiorhodovibrio winogradskyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio → Thiorhodovibrio winogradskyi	0.95 %
Thiotrichales bacterium SG8_50	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium SG8_50	1.90 %
Unclassified	root	N/A	58.10 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.95 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003847|Ga0055582_1016660	Not Available	1342
3300004097|Ga0055584_101350267	Not Available	741
3300004097|Ga0055584_102306057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria → Ruegeria sp. Alg231-54	547
3300004113|Ga0065183_10219366	Not Available	822
3300004113|Ga0065183_10387224	Not Available	665
3300004113|Ga0065183_10650562	Not Available	546
3300005588|Ga0070728_10455448	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → unclassified Fusobacterium → Fusobacterium sp. CM1	673
3300005590|Ga0070727_10014598	All Organisms → cellular organisms → Bacteria → Proteobacteria	5447
3300005590|Ga0070727_10091364	Not Available	1759
3300005590|Ga0070727_10131796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1421

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.95%
Environmental	Environmental	98.10%
Host-Associated	Host-Associated	0.95%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.14%
Lab Enrichment	Engineered → Lab Enrichment	0.95%
Plants	Host-Associated → Plants	0.95%
Terrestrial	Environmental → Terrestrial	0.95%

Category

Habitat	Taxonomy	Distribution
Defined Media	Engineered → Lab Enrichment → Defined Media	0.95%
Freshwater	Environmental → Aquatic → Freshwater	19.05%
Marine	Environmental → Aquatic → Marine	78.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil	0.95%

Type

Habitat	Taxonomy	Distribution
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.95%
Coastal	Environmental → Aquatic → Marine → Coastal	62.86%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	8.57%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	19.05%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%

Subtype

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	62.86%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	4.76%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	19.05%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	8.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.90%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	12.38%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	30.48%
Marine Sediment	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Marine Sediment	0.95%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	8.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	19.05%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	6.67%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	4.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	13.33%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003847	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11	Environmental
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental
3300004113	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)	Environmental
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental
3300005600	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1	Environmental
3300005601	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1	Environmental
3300005609	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1	Environmental
3300005612	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2	Environmental
3300005920	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055582_10166602	3300003847	Pelagic Marine	MMDCGIGMFLAGLLSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLPEEKDKAGYPEHDPAPAGVF*
Ga0055584_1013502671	3300004097	Pelagic Marine	MMDCGIGMFLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKAG*
Ga0055584_1023060571	3300004097	Pelagic Marine	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGDKAE*
Ga0065183_102193661	3300004113	Pelagic Marine	MDCGIGMFLAGLLSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLPEEKDKAGYPEHDPAPAGVF*
Ga0065183_103872241	3300004113	Pelagic Marine	MDHGIIMFLAGLVSGAGLGWYSGKLRERIRQTDPKRSKQESKFYRHLLDKDGISEDGDPGDTRD*
Ga0065183_106505621	3300004113	Pelagic Marine	MDYGIGMFLAGLVSGVGIGWYSGILRERIRQTDPKKSKRQSMLYRHLLEKAGLSEEKDKSG*
Ga0070728_104554481	3300005588	Marine Sediment	VNNGLRNRDVPGGTGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEEKDKAG*
Ga0070727_100145983	3300005590	Marine Sediment	MDYGIGMLLAGLVSGAGIGWYAGILRERIRQTDPKRSKRESNFYRHLLGKAGLPVDGDKGE*
Ga0070727_100913642	3300005590	Marine Sediment	MNCGIGMFLAGLLSGAGIGWYSGILHMRIRQTDPKKNKRESILYRHLLEKAGLSEDGDRGR*
Ga0070727_101317962	3300005590	Marine Sediment	MDYGIGMFLEGLISGAGIGWYSGILRERIRQTDPRKSKREAILYRHLLDKAGLSVDGDKGE*
Ga0070727_101809823	3300005590	Marine Sediment	MDYGIGMFLAGQVSGAGIGWYSGILRERIRQTDPKKSKRQSMLYRHLLEKAGLSEEKDKPG*
Ga0070727_103582551	3300005590	Marine Sediment	MDYGIGMSLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEEKDKAG*
Ga0070727_108650501	3300005590	Marine Sediment	LAGLVSGAGIGWYSSILHMRIRQIDPRKSERESMLYRHLLEKAGLSEEKDKAG*
Ga0070726_105862382	3300005600	Marine Sediment	MFLAGLVSGAGIGWYSGILHLRIKQTDPKKSKRESMLYRHLLEKAGLSEEKDKAG*
Ga0070722_102149582	3300005601	Marine Sediment	MDYGIGMFLEGLISGAGIGWYSGILRERIRQTDPKKSKRQSMLYRHLLEKAGLSEEKDKS
Ga0070724_102055041	3300005609	Marine Sediment	MDYGIGMLLAGLVSGAGIGWYAGILRERIRQTDPKRSKRESNFYRHLLGK
Ga0070723_102144251	3300005612	Marine Sediment	MDYGIGMFLAGLLSGAGTGWYSGILHMRIKQTDPKRSKRESNFYRHLLSKAGLSVDGDQGK*
Ga0070723_105125151	3300005612	Marine Sediment	MDYGIGMFLAGLALGYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEEKDKAG*
Ga0070725_102908001	3300005920	Marine Sediment	IGMFLAGLLSGAGLGWYSGILRERIRQTDPKRSKRESNFYRHLLGKAGLPVDGDKGE*
Ga0102541_12822472	3300007102	Marine Sediment	MDYGIGMFLAGLVSGAGIGWYSGILHQRIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKGE*
Ga0102955_10635551	3300007784	Soil	MDCGIGMFLAGLVSGAGIGWYAGILRERIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKGE*
Ga0111031_11350272	3300007900	Marine Sediment	MDYGIGTFLAGLISGAGIGWYSGKLRMRIRQTAPKKSKCESMLYRHLLGKGG*
Ga0118731_1006927651	3300010392	Marine	MMDYGIGMFLAGLLSGAGIGWYSGILHMRIKHTDPKKSKRESMLYRHLLEKAGLSEEKDKAG*
Ga0118731_1034633092	3300010392	Marine	MMDYGIGMFLAGLVSGAGIGWYSGILQMRIRQTDPKRSKRESAFYRHLLEKAGLSEEKDKAG*
Ga0118731_1038725601	3300010392	Marine	MDYGIGMFLAGLISGAGLGWYSGILHQRIQQTDPKKSKWESKFYRHLLDKAGLSVDGDKNK*
Ga0118731_1045926241	3300010392	Marine	MDYGIGMSLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEEK
Ga0118731_1060152002	3300010392	Marine	MMDYGIGMFLAGLVSGAGIGWYSSILHMRIRQIDPRKSERESMLYRHLLEKAGLSEEKDKAG*
Ga0118731_1084826933	3300010392	Marine	LAGLVSGAGLGWYSGILHVRIKQTDPKKSKRESNFYRHLLDKAGLSVDEDKAE*
Ga0118731_1109694012	3300010392	Marine	MDYGIGMFLAGLVSGAGIGWYSGILHQRIQQTDPRKSKRESNFYRHLLDKAGLSEEKDKSG*
Ga0118731_1122572821	3300010392	Marine	MDYGIGMFLAGLISGAGIGWYSGILHMRIRQTDPKKSKRESMLYRHLLEKAGLSEKKDKSG*
Ga0118731_1130655881	3300010392	Marine	MDYGIGMFLAGLVSGAGIGWYSGILHMRIRQTDPKRSKRVSNFYRHLLDKAGLPVAGNKDG*
Ga0118731_1134746222	3300010392	Marine	MMDYGIGMFLAGLLSGAGTGWYSGILHMRIKQTDPKRSKRESNFYRHLLSKAGLSVDGDQGK*
Ga0118731_1146752091	3300010392	Marine	MMDYGIGMFLAGLVSGASIAWYSGILQMRIKHTDPKKSKRESMLYRHLLEKA
Ga0118731_1148372383	3300010392	Marine	MMDNGIGMFLAGLLSGAGIGWYRGILHMRIKQTDPKESHRESAFYRHLLSKAGLSEDDPPEK*
Ga0118731_1149802772	3300010392	Marine	MDYGIGMFLAGLVSGAGIGWYSGILRERIRQTDPKKSKRESNFYRHLLYKAGLSEDGDKGE*
Ga0118733_1001828642	3300010430	Marine Sediment	MDYGIGMFLAGQVSGAGIGWYSGILRERIRQTDPKKSKRQSMLYRHLLEKAGLSEEKDKSG*
Ga0118733_1002494772	3300010430	Marine Sediment	MMNCGIGMFLAGLLSGAGIGWYSGILHMRIRQTDPKKNKRESILYRHLLEKAGLSEDGDRGR*
Ga0118733_1011105851	3300010430	Marine Sediment	MMDYGIGMFLAGLVSGAGIGWYSGILHTRIQQTDPKRSKRESMLYRHLLEKAGLSEDGDKAE*
Ga0118733_1012474142	3300010430	Marine Sediment	MDYGIGMSLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEE
Ga0118733_1066415852	3300010430	Marine Sediment	MDYGIGMFLAGLVSGSGIGWYSGILRERIKQTDPKRNKRESMLYRHLLEKAGLSEEKDKSG*
Ga0118733_1068380381	3300010430	Marine Sediment	GIGMFLAGLISGAGIGWYSGILHMRIRQTDPKKSKRESMLYRHLLEKAGLSEKKDKSG*
Ga0118733_1073027261	3300010430	Marine Sediment	MDYGIGMFLAGLVSGAGIGWYAGILRARIRQTDPEKSKRESNFYRHLLGKAGLSEDGEKPE*
Ga0118733_1073378662	3300010430	Marine Sediment	MDHGIIMFLAGLVSGAGIGWYAGILRERIRQTDPEKSQRESAFYRHLLDKSGLAK
Ga0118733_1080988642	3300010430	Marine Sediment	FLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESILYRHLLEKAGLSEEKDKSG*
Ga0118733_1090630251	3300010430	Marine Sediment	MMDYGIGMFLAGLISGAGIGWYSGILHQRIQQTDPKKSKWESKFYRHLLDKAGLSVDGDKNK*
Ga0114922_100833241	3300011118	Deep Subsurface	MDYGIGTFLAGLISGAGIGWYSGKLHMRIRQTAPKKSKCESMLYRHLLGKGG*
Ga0114922_106815642	3300011118	Deep Subsurface	MMDYGIGMFLPGLVSGAGIGWYSGILHMRIKQTDPEKSKRESNFYRHLLYKSGLSADEPPEK*
Ga0194017_10188462	3300019696	Sediment	MGNGIGWFLAGLLSGAGIGWYAGILRERIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKG
Ga0194017_10212681	3300019696	Sediment	MDYGIGMFLAGLLSGAGIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGDKA
Ga0193986_10222951	3300019698	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGDKA
Ga0194006_10323172	3300019700	Sediment	LFPAGLISGAVIGWYSGILRERIRQTDPKKSKREAIIYRHLLEKAGLSEEKDKAG
Ga0193981_10135191	3300019705	Sediment	MFLAGLLSGAGIGWYSGILRERIRQTDPKKSKREAIIYRHLLEKAGLSEEKDKAG
Ga0193995_10037062	3300019706	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGFAVDGDKA
Ga0193993_10251392	3300019711	Sediment	MMDHGTIMFLAGLLSGAGIGWYSGILRERIRQTDPRKSKRESMLYRYLLEKAGLSVDGDRGR
Ga0193977_10007602	3300019719	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLYVDGDKA
Ga0193971_10488311	3300019722	Sediment	MDHGIIMFLAGLLSGAGLGWYAGILRERIKQTDPKRSKWESNFYRHLLDKAGLSVNGDPGDTRD
Ga0194003_10333461	3300019724	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGHKA
Ga0193974_10118391	3300019726	Sediment	LFLAGLLSGAGIGWYSGILRERIRQTDPKKSKREAIIYRHLLEKAGLSEEKDKAG
Ga0193968_10562562	3300019729	Sediment	FLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKAG
Ga0193982_10257391	3300019731	Sediment	IFAEHNGIILFLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKAA
Ga0193970_10284861	3300019734	Sediment	MDYGIGMFLAGLLSGAAIGWYSGILRERIRQTDPKKSKRESMFYRQLLYKAGLSEDGGKG
Ga0193992_10286391	3300019743	Sediment	MDRGIILFLAGLLSCAGIGWYSGILHQRIQQTDPKKSKRESKFYRHLLEKAGLSEEKDKA
Ga0193992_10636361	3300019743	Sediment	MDYGIGMFLAGLLSGAAIGWYSGILHMRIKQTDPKRSKRESMLYRHLLEKAGLSEDGDRG
Ga0193998_10082432	3300019744	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPKKSKRESNFYRQLLEK
Ga0194008_10217992	3300019746	Sediment	LFLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKA
Ga0194010_10003776	3300019753	Sediment	MDYGIGMFLAGMISGAGVGWYGGLLRERIRQTDPKRSKRESILY
Ga0194005_1049162	3300019934	Sediment	MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKA
Ga0209456_101292302	3300025883	Pelagic Marine	MMDCGIGMFLAGLLSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLPEEKDKAGYPEHDPAPAGVF
Ga0209456_103462871	3300025883	Pelagic Marine	MDYGIGMFLAGLVSGSGIGWYSGILRERIRQADPKRSKRESMLYRHLLGKAGLSEDGDKA
Ga0209567_101643172	3300025895	Pelagic Marine	MDYGIGMFLAGLVSGSGIGWYSGILRERIRQTDPKRSKRESMLYRHLLGKAGLSEDGDKA
Ga0209379_103051251	3300027758	Marine Sediment	MDYGIGMSLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLEKAGLSEEKDKA
Ga0209273_100104739	3300027790	Marine Sediment	MDYGIGMLLAGLVSGAGIGWYAGILRERIRQTDPKRSKRESNFYRHLLGKAGLPVDGDKG
Ga0209273_101849252	3300027790	Marine Sediment	MNCGIGMFLAGLLSGAGIGWYSGILHMRIRQTDPKKNKRESILYRHLLEKAGLSEDGDRG
Ga0209578_101004802	3300027820	Marine Sediment	MDYGIGMFLEGLISGAGIGWYSGILRERIRQTDPRKSKREAILYRHLLDKAGLSVDGDKG
Ga0209578_101606151	3300027820	Marine Sediment	MDYGIGMSLAGLVSGAGIGWYSGILHMRIKHTDPKKSKRESTLYRHLLE
Ga0209578_102933111	3300027820	Marine Sediment	MDYGIGMFLAGQVSGAGIGWYSGILRERIRQTDPKKSKRQSMLYRHLLEKAGLSEEKDKS
Ga0209271_102461101	3300027845	Marine Sediment	MDYGIGMFLAGLLSGAGTGWYSGILHMRIKQTDPKRSKRESNFYRHLLSKAGLSVDGDQG
Ga0209272_103281061	3300027967	Marine Sediment	IGMLLAGLVSGAGIGWYAGILRERIRQTDPKRSKRESNFYRHLLGKAGLPVDGDKGE
Ga0265309_105435092	3300028599	Sediment	MDHGMIMFLAGLLSGAGIGWYSGILHERIRQTDPNKSKWESKFYRHFLYKAGLSGDGDPGHNRD
Ga0265303_103938863	3300028600	Sediment	MFLAGLVSGAGIGWYSGILHMCIKHTDPKKSKRESTLYRHLLEKAGLSEEKDKAG
Ga0265303_105436762	3300028600	Sediment	MDYGIGMFLAGLVSGAGIGWYSGILHMRIRQTDPEKSKRESIFYRYLFYKAGLSADGDKG
Ga0265303_108876462	3300028600	Sediment	LAGLLSGAGIGWYAGILRERIRQTDPKKSKWESKFYRHLLYKA
Ga0265303_117752621	3300028600	Sediment	MMNCGIGMFLAGLLSGAGIGWYSGILHMRIRQTDPKNNKRESILYRHLLEKAGLSEDGDRGR
Ga0316576_101578802	3300031727	Rhizosphere	MDYGIGMFLAGFVSGAGIGWYSGILHMRIKQTDPKKSKRESMLYRHLLDK
Ga0316187_1001003610	3300032231	Worm Burrow	MDYGIGMFLAGLVSGAGIGWYSGILHQRIQQTDPRKSKRESNFYRPLLGKAGLSIDGDKEDDRA
Ga0316187_100279322	3300032231	Worm Burrow	MDYGIGMFLAGLLSGAGIGWYAGILRERIRQTDPKRSKRESMLYRHLLSKAGLSEDEDKA
Ga0316187_100586183	3300032231	Worm Burrow	MDCGIGMFLAGLVSGAGIGWYAGILRERIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKG
Ga0316187_102049642	3300032231	Worm Burrow	MDYGIGTFLAGLISGAGIGWYSGKLRMRIRQTAPKKSKCESMLYRHLLGKGG
Ga0316187_104013082	3300032231	Worm Burrow	MDYGTGMFLAGIGWYSGILHVRIKQTDPEKSKRESNFYRHLLEKAGLSEKKDKAG
Ga0316187_104284052	3300032231	Worm Burrow	MDYGIGMFLAGLVSGAGIGWYSGILHMRIRQTDPEISKRESNFYRHLLDKAGLSVDGDKG
Ga0316198_100056668	3300032251	Sediment	MDYGIRMFLAGLVSGVGLGWYSGILHQRIKQTDPKKSKRESMLYRHLFYKAGLSEEKDKA
Ga0316198_103457322	3300032251	Sediment	MDYGIGMFLAGLVSGSGIGWYSGILRERIRQTDPKKSKRESNFYRHLLYKVGLSEDGDKG
Ga0316191_100626101	3300032258	Worm Burrow	MFLAGLVSGAGIGWYAGILRERIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKGE
Ga0316191_102680702	3300032258	Worm Burrow	MDYGIGMLLAGLVSGAGIGWYAGILRERIRQTDPKRSKWESNFYRHLMDKAGLSVNGDPGDTRG
Ga0316190_103512802	3300032259	Worm Burrow	MMDYGIGMFLADLVSGAGLGWYSGILHQRIQQTDPKKSKRESTFYRHLLGKDGLSEDEDKAG
Ga0316192_101120471	3300032260	Worm Burrow	MDYGIGMFLAGLVSGAGIGWYSGILHQRIQQTDPRKSKRESNFYRHLLGKADSSEDEDKA
Ga0316192_101553234	3300032260	Worm Burrow	MDYGIGMFLAGLISGAGIGWYSGILHMRIKHTDPKKSKRESMLYRHLLEKTGLSEEKDKG
Ga0316192_103345082	3300032260	Worm Burrow	MMDYGIGMFLAGLLSGAGIGWYAGILRERIRQTDPKRSKRESMLYRHLLSKAGLSEDEDKAG
Ga0316192_111992961	3300032260	Worm Burrow	MDYGIGMFLAGLVSGSGIGWYSGILRERIRQTDPKKSKRESNFYRHLLYKVGLS
Ga0316194_101895981	3300032262	Sediment	MMDYGIGMFLAGLLSGAGIGWYSGILHMRIKHTDPKKSKRESMLYRHLLEKTGLSEEKDKGE
Ga0316189_111198202	3300032272	Worm Burrow	LFLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKAG
Ga0316197_100509783	3300032273	Sediment	MDYGIGTFLAGLISGAGIGWYSGKLHMRIRQTAPKKSKCESMLYRHLLGKGG
Ga0316193_100205402	3300033429	Sediment	MDYGIGMFLADLVSGAGLGWYSGILHQRIQQTDPKKSKRESTFYRHLLGKDGLSEDEDKA
Ga0316193_103533603	3300033429	Sediment	GIGMFLPGLVSGAGIGWYSGILHMRIKQTDPEKSKRESNFYRHLLYKSGLSADEPPEK
Ga0316193_107339692	3300033429	Sediment	MDYGIGMFLAGLISGAGIGWYSGILHMRIKHTDPKKSKRESMLYRHLLEKAGLSEEKDKA