Metagenome / Metatranscriptome Family F094979

Basic Information
Family ID	F094979
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	45 residues
Representative Sequence	RHAAPVDALKRIVVDLRTGAAPDFATLSVALQAVRRLAQD
Number of Associated Samples	93
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	95.24 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (72.381 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (15.238 % of family members)
Environment Ontology (ENVO)	Unclassified (22.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.429 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.06% β-sheet: 0.00% Coil/Unstructured: 52.94%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF09500	YiiD_C	58.10
PF00300	His_Phos_1	34.29
PF00111	Fer2	2.86
PF02567	PhzC-PhzF	0.95
PF04973	NMN_transporter	0.95
PF01633	Choline_kinase	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.95
COG3201	Nicotinamide riboside transporter PnuC	Coenzyme transport and metabolism [H]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.33 %
Unclassified	root	N/A	27.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	20.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	9.52 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.90 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.95 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	8.57 %
unclassified Clostridia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia	1.90 %
Hahellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	8.57 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1.90 %
Hahella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1012667	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300001593\|JGI12635J15846_10193566	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300001593\|JGI12635J15846_10341048	Not Available	922	Open in IMG/M
3300002245\|JGIcombinedJ26739_100321502	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300002245\|JGIcombinedJ26739_101184171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	653	Open in IMG/M
3300004082\|Ga0062384_100157808	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300004152\|Ga0062386_100432148	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300005947\|Ga0066794_10146299	Not Available	710	Open in IMG/M
3300006086\|Ga0075019_10736938	Not Available	625	Open in IMG/M
3300007265\|Ga0099794_10555290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	606	Open in IMG/M
3300009521\|Ga0116222_1325843	Not Available	665	Open in IMG/M
3300009709\|Ga0116227_11299079	Not Available	546	Open in IMG/M
3300009709\|Ga0116227_11515878	Not Available	501	Open in IMG/M
3300009764\|Ga0116134_1091637	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300010379\|Ga0136449_100758785	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300010379\|Ga0136449_103671833	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300010876\|Ga0126361_10201846	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300011269\|Ga0137392_11557867	Not Available	519	Open in IMG/M
3300012202\|Ga0137363_11811588	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300012582\|Ga0137358_10451148	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300012917\|Ga0137395_10330662	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300012929\|Ga0137404_10957609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	782	Open in IMG/M
3300012929\|Ga0137404_11910031	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300012944\|Ga0137410_10963858	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300014162\|Ga0181538_10185189	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300014168\|Ga0181534_10940982	Not Available	519	Open in IMG/M
3300014201\|Ga0181537_10219472	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300014498\|Ga0182019_10735400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	701	Open in IMG/M
3300014654\|Ga0181525_10415267	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300015162\|Ga0167653_1085477	Not Available	503	Open in IMG/M
3300015206\|Ga0167644_1098089	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300015245\|Ga0137409_10592934	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300015264\|Ga0137403_10860122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	758	Open in IMG/M
3300018009\|Ga0187884_10478572	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300018037\|Ga0187883_10226172	All Organisms → cellular organisms → Bacteria → Proteobacteria	958	Open in IMG/M
3300018038\|Ga0187855_10888281	Not Available	520	Open in IMG/M
3300020012\|Ga0193732_1059244	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300020580\|Ga0210403_11246030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	571	Open in IMG/M
3300020581\|Ga0210399_10617768	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300021178\|Ga0210408_10688902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	805	Open in IMG/M
3300021180\|Ga0210396_10732402	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300021180\|Ga0210396_11586542	Not Available	535	Open in IMG/M
3300021405\|Ga0210387_11289750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	632	Open in IMG/M
3300021405\|Ga0210387_11668104	Not Available	541	Open in IMG/M
3300021406\|Ga0210386_10676113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	890	Open in IMG/M
3300021406\|Ga0210386_11621415	Not Available	536	Open in IMG/M
3300021407\|Ga0210383_10841895	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300021411\|Ga0193709_1087504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	685	Open in IMG/M
3300021475\|Ga0210392_10079848	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300021475\|Ga0210392_11010554	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300021479\|Ga0210410_10382681	Not Available	1261	Open in IMG/M
3300022533\|Ga0242662_10127961	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300024225\|Ga0224572_1098694	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	539	Open in IMG/M
3300024232\|Ga0247664_1096680	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300025494\|Ga0207928_1085783	Not Available	583	Open in IMG/M
3300025664\|Ga0208849_1056409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1172	Open in IMG/M
3300026223\|Ga0209840_1104417	Not Available	611	Open in IMG/M
3300026369\|Ga0257152_1026286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	625	Open in IMG/M
3300026557\|Ga0179587_10274559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	1082	Open in IMG/M
3300027072\|Ga0208238_1018612	Not Available	602	Open in IMG/M
3300027674\|Ga0209118_1026047	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300027727\|Ga0209328_10075204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1033	Open in IMG/M
3300027795\|Ga0209139_10057891	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300027807\|Ga0209208_10097567	All Organisms → cellular organisms → Bacteria → Proteobacteria	2017	Open in IMG/M
3300027829\|Ga0209773_10296410	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300027860\|Ga0209611_10708876	Not Available	544	Open in IMG/M
3300027867\|Ga0209167_10291040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	882	Open in IMG/M
3300027869\|Ga0209579_10524538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	643	Open in IMG/M
3300027908\|Ga0209006_10609947	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300028742\|Ga0302220_10330138	Not Available	552	Open in IMG/M
3300028773\|Ga0302234_10061581	All Organisms → cellular organisms → Bacteria → Proteobacteria	1682	Open in IMG/M
3300028773\|Ga0302234_10503699	Not Available	518	Open in IMG/M
3300028789\|Ga0302232_10192021	Not Available	1020	Open in IMG/M
3300028866\|Ga0302278_10193185	Not Available	1018	Open in IMG/M
3300029913\|Ga0311362_10260354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1871	Open in IMG/M
3300029939\|Ga0311328_11116387	Not Available	508	Open in IMG/M
3300029951\|Ga0311371_10891476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1078	Open in IMG/M
3300029955\|Ga0311342_11039415	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300029997\|Ga0302302_1155864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	888	Open in IMG/M
3300030056\|Ga0302181_10303417	Not Available	708	Open in IMG/M
3300030490\|Ga0302184_10236130	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300030503\|Ga0311370_10025723	All Organisms → cellular organisms → Bacteria → Proteobacteria	8967	Open in IMG/M
3300030524\|Ga0311357_10329655	Not Available	1456	Open in IMG/M
3300030618\|Ga0311354_11585481	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300030688\|Ga0311345_10761166	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300030760\|Ga0265762_1067445	Not Available	745	Open in IMG/M
3300030906\|Ga0302314_10473214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1357	Open in IMG/M
3300030906\|Ga0302314_10859546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	897	Open in IMG/M
3300031057\|Ga0170834_103909935	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300031122\|Ga0170822_11917002	Not Available	504	Open in IMG/M
3300031234\|Ga0302325_11652308	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031236\|Ga0302324_101914676	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300031250\|Ga0265331_10491299	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031525\|Ga0302326_10139109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4213	Open in IMG/M
3300031708\|Ga0310686_110659813	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300031708\|Ga0310686_119737196	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031712\|Ga0265342_10568465	Not Available	574	Open in IMG/M
3300031715\|Ga0307476_11373118	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031788\|Ga0302319_10741050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	987	Open in IMG/M
3300031902\|Ga0302322_100742899	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300031954\|Ga0306926_12724238	Not Available	536	Open in IMG/M
3300033887\|Ga0334790_026542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2477	Open in IMG/M
3300034124\|Ga0370483_0079039	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300034199\|Ga0370514_070467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Hahella	884	Open in IMG/M
3300034282\|Ga0370492_0480826	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.38%
Host-Associated	Host-Associated	7.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Aquatic	Environmental → Aquatic	12.38%
Plants	Host-Associated → Plants	7.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.14%
Peat	Environmental → Terrestrial → Peat	22.86%
Freshwater	Environmental → Aquatic → Freshwater	11.43%
Peat Moss	Host-Associated → Plants → Peat Moss	3.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.86%
Sediment	Environmental → Aquatic → Sediment	0.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	22.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.43%
Loam	Environmental → Terrestrial → Soil → Loam	7.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.71%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	22.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.05%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.62%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.24%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	15.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.62%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.81%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.95%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.95%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.95%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027072	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10126673	3300000546	Quercus Rhizosphere	VDSLKRVVVDLRTGTPPDFATISVALQAVRRLAQD*
JGI12635J15846_101935663	3300001593	Forest Soil	LSRHSGPVDALKRLVADLRTGSPPDFATISVALQAVRRLAQ*
JGI12635J15846_103410481	3300001593	Forest Soil	DALKRVVVDLRTGSPPDFATLSVALQAVRRLAPD*
JGIcombinedJ26739_1003215021	3300002245	Forest Soil	IERHAAPVDALKRVVVDLRTGSAADFATLSVALQALRRLAQD*
JGIcombinedJ26739_1011841712	3300002245	Forest Soil	ARHSAPVDALKRVVVDLRTGTAPDFATLSVALQAVRRLAQD*
Ga0062384_1001578081	3300004082	Bog Forest Soil	RHAAPVDALKRLVADLRTGSPPDFATISVALQAVRRLAN*
Ga0062386_1004321481	3300004152	Bog Forest Soil	RDAAARVDRWIMGCATAVESLKRIVADLRTGAAPEFATLSVAMQAVRRLAQD*
Ga0066794_101462992	3300005947	Soil	VDSLKRIVVDLRTGSSPDFAALSVALQAVRRLAQD*
Ga0075019_107369382	3300006086	Watersheds	GVDALKRIVVDLRTGAAPDFATLSVALQAVRRLAPD*
Ga0099794_105552902	3300007265	Vadose Zone Soil	RVEQWLSRHSAAVDSLKRVVVDLRTGSPPDFATISVALQVVRRLAQD*
Ga0116222_13258431	3300009521	Peatlands Soil	HPPAVDALKRIVVDLRSGSAPDFAALSVALQAVRRLARD*
Ga0116227_112990791	3300009709	Host-Associated	VPVESLKRIVVDLRTGTAPDFATLSVALQAVRRLAQE*
Ga0116227_115158782	3300009709	Host-Associated	AAHADAALALKRIIVDLRTGAAPDFATLSVALQAVRRLGTEGAHG*
Ga0116134_10916371	3300009764	Peatland	IVVDLRTGAAPDFATLSVALQAVRRLVQDGVHAG*
Ga0136449_1007587851	3300010379	Peatlands Soil	GERHPPAVDALKRIVVDLRSGSAPDFAALSVALQAVRRLARD*
Ga0136449_1036718331	3300010379	Peatlands Soil	RVDQWSLRHGVPVDSLKRIVVDLRTGTAPDFATLSVALQAVRRLAEE*
Ga0126361_102018461	3300010876	Boreal Forest Soil	RHASPLDALKRVVVDMRTAPPDFATLSVALQAVRRLAQD*
Ga0137392_115578671	3300011269	Vadose Zone Soil	PVDALKRVVVDLRTGTPPDFATLSVALQAVRRLAQD*
Ga0137363_118115881	3300012202	Vadose Zone Soil	CKGRDPEARVEQWLSRHSAAVDALKRVVVDLRTGSPPDFATISVALQVVRRLAQD*
Ga0137358_104511481	3300012582	Vadose Zone Soil	PVDALKRVIVDLRTGTPPDFATLSVALQAVRRLAQD*
Ga0137395_103306623	3300012917	Vadose Zone Soil	LKRIVVDLRTGTAPDFATLSVALQAVRRLVQDGSHAG*
Ga0137404_109576091	3300012929	Vadose Zone Soil	ITLAVLRCKGRDPEARVEQWLSRHSAAVDSLKRVVVDLRTGSPPDFATISVALQVVRRLAQD*
Ga0137404_119100312	3300012929	Vadose Zone Soil	ITLSVLRCKGRDAAARVEHWLSRHAAPVDSLKRVVVDLRTGSPPDFPTISVALQAVRRLAQD*
Ga0137410_109638581	3300012944	Vadose Zone Soil	LKRIVVDLRTGAAPDFATLSVALQAVRRLAQDGVHAG*
Ga0181538_101851893	3300014162	Bog	RDVTARVDQWSGRHAASLEALKRIVVDLRTGSAPDFATLSVALQAVRRLAQE*
Ga0181534_109409822	3300014168	Bog	ARVDKWLAAHAGGIDSLKRIVVDLRTGAAPDFATLSVALQAVRRLVQS*
Ga0181537_102194721	3300014201	Bog	ARVTHWIGRHLVPVESLKRVVVDLRTGSPPDFATLSVALQAVRRLVQE*
Ga0182019_107354001	3300014498	Fen	HAAAVDALKRIVVDLRTGAAPDFATLSVALQAVRRLAPD*
Ga0181525_104152672	3300014654	Bog	RRAASLDALRRIVVDLRTSAAPDFATLSVALQAVRRLAQ*
Ga0167653_10854771	3300015162	Glacier Forefield Soil	ISRHAAPVEALKRIVVDLRTGSPPDFATLSVALQAVRRLAQD*
Ga0167644_10980893	3300015206	Glacier Forefield Soil	RHAAPVDALKRLVADLRTGSPPDFATISVALQAVRRLAH*
Ga0137409_105929341	3300015245	Vadose Zone Soil	WLQRRSVAVESLKRIVVDLRTGAAPDFATLSVALQAVRRLAQDGVHAG*
Ga0137403_108601221	3300015264	Vadose Zone Soil	HSAAVDSLKRVVVDLRTGTPPDFATISVALQVVRRLAQD*
Ga0187884_104785721	3300018009	Peatland	RVAEWIRRRAAPVDVLKRILVDLRTGSPPDFATLSVALQAVRRLAQ
Ga0187883_102261723	3300018037	Peatland	KITGAALKCKGREPGARVAEWIRRRAAPVDVLKRILVDLRTGSPPDFATLSVALQAVRRLAQ
Ga0187855_108882811	3300018038	Peatland	DQWTRLHSGAVESLKRIVVDLRTGSQPDFATLSVALQAVRRLAQDGSAPENLTSG
Ga0193732_10592443	3300020012	Soil	HSAPVESLKRVVVDLRTGSAPDFATLSVALQAVRRLAQD
Ga0210403_112460301	3300020580	Soil	VSHWIARHASPLDALKRVVVDMRTAPPDFATLSVALQAVRRLAQD
Ga0210399_106177683	3300020581	Soil	WVQRHAAPDDALKRVVVDLRTGSPPDFATLSVALQAVRRLAQD
Ga0210408_106889021	3300021178	Soil	RGRDAGGRVDQWLARHAAPVDALKRVVVDLRTGTPPDFATLSVALQALRRLAQD
Ga0210396_107324023	3300021180	Soil	ARHSAPVDSLKRLVADLRTGSPPDFATISVALQAVRRLAQ
Ga0210396_115865421	3300021180	Soil	RVDEWSRRRAAGVDALKRIVIDLRTGSPPDFATLSVALQAVRRLAQN
Ga0210387_112897502	3300021405	Soil	LDARSAAAQSLKRIVVDLRTGTAPDFATLSVALQAVRRLVQDGSHAG
Ga0210387_116681041	3300021405	Soil	GRDAAARVTRWIERHAGPVDALKRVVVDLRTGSPPDFATLSVALQAVRRLAQD
Ga0210386_106761133	3300021406	Soil	KITAAVLACRGRDAGERVSHWIARHASPLDALKRVVVDLRTALPDFATLSVALQAVRRLAQD
Ga0210386_116214151	3300021406	Soil	VEPLKRVVVDLRTGAPPDFATLSVALQAVRRLVQQ
Ga0210383_108418953	3300021407	Soil	KGRDAGARVDEWIRRRAAPVDILKRIVVDLRTGSPPDFATLSVALQAVRRLAQQ
Ga0193709_10875042	3300021411	Soil	SAAVDALKRVVVDLRTGTPPDFATISVALQAVRRLAQD
Ga0210392_100798481	3300021475	Soil	PVDALKRLVADLRTGSPPDFATISVALQAVRRLAQD
Ga0210392_110105541	3300021475	Soil	SRHAAPVDALKRLVADLRTGSPPDFATISVALQAVRRLAN
Ga0210410_103826812	3300021479	Soil	DLYGLQRRITGAALACKGREVGARVDEWMRRPATSVDSLKRIVVDLRTGPPPDFATLSVALQAARRIARE
Ga0242662_101279611	3300022533	Soil	NLYALQSKITLAVLRCKGREAGARVEQWLSRHSNPIDALKRVVVDLRTGSPPDFATISVALQAVRRLAQD
Ga0224572_10986942	3300024225	Rhizosphere	SLDVLRRIVVDLRTGSAPDFATLSVALQAVRRLAQE
Ga0247664_10966801	3300024232	Soil	QWIEQHSTGVDWLKGLVVDLRTGSAPDFATLSVALQAVRRLAQD
Ga0207928_10857831	3300025494	Arctic Peat Soil	GVRVDRWSAGHAGAVESLKRIVVDLRTGSSPDFAALSVALQAVRRLGQD
Ga0208849_10564091	3300025664	Arctic Peat Soil	VDQWIGRHSPSVDALKRIVVDLRTGSQPDFATLSVALQAVRRLAQA
Ga0209840_11044172	3300026223	Soil	VDSLKRIVVDLRTGSSPDFAALSVALQAVRRLAQD
Ga0257152_10262861	3300026369	Soil	VDALKRVVVDLRTGSPPEFATLSVALQAVRRLAQD
Ga0179587_102745591	3300026557	Vadose Zone Soil	AAPVDSLKRVVVDLRTGSPPDFATLSVALQAVRRLA
Ga0208238_10186121	3300027072	Forest Soil	AGTRVGQWIERHAAPVDALKRVVVDLRTGSPPDFATLSVALQAVRRLAPD
Ga0209118_10260475	3300027674	Forest Soil	PIDALKRVVVDLRTGSPPDFATISVALQAVRRLAQD
Ga0209328_100752041	3300027727	Forest Soil	RRIVVDLRTGTAPDFATLSVALRAVRRLVQDGSHAG
Ga0209139_100578913	3300027795	Bog Forest Soil	QWMERHAAPVESLKRVVVDLRTGTPPDFATLSVALQAVRRLAQD
Ga0209208_100975671	3300027807	Host-Associated	HDAPVESLKRIVVDLRTGTAPDFATLSVALQAVRRLVQD
Ga0209773_102964101	3300027829	Bog Forest Soil	GRITLAVLKCTGREPAARVDHWLARHSGPVDALKRLVADLRTGSPPDFATISVALQAVRRLAH
Ga0209611_107088761	3300027860	Host-Associated	VPVESLKRIVVDLRTGAAPDFATLSVALQAVRRLSQD
Ga0209167_102910401	3300027867	Surface Soil	RHAAPVDALKRIVVDLRTGAAPDFATLSVALQAVRRLAQD
Ga0209579_105245381	3300027869	Surface Soil	KCKGRDAAARADQWTRRHAASVDTLKRIVVDLRTGSPPDFATLSVALQAVRRLAQE
Ga0209006_106099471	3300027908	Forest Soil	APLDALKRVVVDLRTGSPADFATLSVALQAVRRLAQD
Ga0302220_103301381	3300028742	Palsa	HAAPVDALKRVVVDLRTGSAPDFATLSVALQALRRLAQD
Ga0302234_100615814	3300028773	Palsa	QWLSRHSAPVDALKRLVADLRTGSPPDFATISVALQAVRRLAH
Ga0302234_105036991	3300028773	Palsa	HAPSLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0302232_101920211	3300028789	Palsa	RVDQWSGRHAASLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0302278_101931851	3300028866	Bog	DQWMARHAGPVDALKRVVVDLRTGAAPDFATLSVAIQAVRRLAQD
Ga0311362_102603541	3300029913	Bog	GARVDQWMARHAGPVDALKRVVVDLRTGAAPDFATLSVAIQAVRRLAQD
Ga0311328_111163871	3300029939	Bog	MRRAAPVEFLKQIVVDLRTGSAPDFATLSVAIQAVRRLAQE
Ga0311371_108914763	3300029951	Palsa	DAAARVDHWMARHAAPVESLKRVVVDLRTGTPPDFATLSVALQAVRRCTG
Ga0311342_110394151	3300029955	Bog	DEHAAPVEALKRIVVDLRTGTAPDFATLSVALQAVRRLVQDGVHAG
Ga0302302_11558641	3300029997	Palsa	RHSVAVDSLKRIVVDLRTGTAPDFATLSVALQAVRRLAQD
Ga0302181_103034171	3300030056	Palsa	DAAARVDQWSGRHAPSLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0302184_102361301	3300030490	Palsa	IKCRGRDAAARVDQWSGRHAPSLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0311370_100257231	3300030503	Palsa	WLQGHAAGIDSLKRIVVDLRTGAAPDFATLSVALQAVRRLVQS
Ga0311357_103296554	3300030524	Palsa	AASLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0311354_115854811	3300030618	Palsa	AASLDALRRIVVDLRTGSAPDFATLSVALQAVRRLAQE
Ga0311345_107611663	3300030688	Bog	NAGARVDQWMARHAGPVDALKRVVVDLRTGAAPDFATLSVAIQAVRRLAQD
Ga0265762_10674451	3300030760	Soil	TAAVLACRGRDAGERVSHWIARHASPLDALKRVVVDMRTAPPDFATLSVALQAVRRLAQD
Ga0302314_104732141	3300030906	Palsa	VDQWLQGHAAGIDSLKRIVVDLRTGAAPDFATLSVALQAVRRLVQS
Ga0302314_108595463	3300030906	Palsa	ALACKGRDAAARVDHWMARHAAPVESLKRVVVDLRTGTPPDFATLSVALQAVRRCTG
Ga0170834_1039099352	3300031057	Forest Soil	DPAARVEKWIARNSIPVEALKRVMVDLRTGTPPDFATLSVALQAVRRLVQE
Ga0170822_119170021	3300031122	Forest Soil	RIVVDLRTGTAPDFATLSVALQAVRRLVQDGSHAG
Ga0302325_116523081	3300031234	Palsa	AARVDQWSGRHAASLEALKRIVVDLRTGSAPDFATLSVALQAVRRLSQE
Ga0302324_1019146762	3300031236	Palsa	VLKCRGRDATARVDQWSGRHAASLDALRRIVVDVRTGSVPDFATLSVALQAVRRLAQQ
Ga0265331_104912991	3300031250	Rhizosphere	RVSQWIARHLGPVDALKRVVVDLRTGSPPDFATLSVALQALRRLAQD
Ga0302326_101391091	3300031525	Palsa	GRDAAVRVDQWSGRHAVSLEALKRIVVDLRTGSAPDFATLSVALQAVRRLAQE
Ga0310686_1106598131	3300031708	Soil	RAEQWTRRHAASVDVLKRIVVDLRTGSPPDFAALSVALQAVRRLAQE
Ga0310686_1197371962	3300031708	Soil	WIMRRAAPVESLKQIVVDLRTGSAPDFATLSVAIQAVRRLAQD
Ga0265342_105684651	3300031712	Rhizosphere	LACKGRDAGARVSQWIARHLGPVDALKRVVVDLRTGSPPDFATLSVALQALRRLAQD
Ga0307476_113731182	3300031715	Hardwood Forest Soil	IARHASPLDALKRVVVDLRTALPDFATLSVALQAVRRLAQD
Ga0302319_107410501	3300031788	Bog	PVEFLKQIVVDLRTGSAPDFATLSVAIQAVRRLAQE
Ga0302322_1007428993	3300031902	Fen	LEKWMARRAGEIDYLKRVLIDMRTGANPDFATLSVALQSVRRIGGE
Ga0306926_127242381	3300031954	Soil	DARVTQWIEERSAPAEALKRVVVDLRTGSAPDFATLSVALQAVRRLAQG
Ga0334790_026542_2_157	3300033887	Soil	VDHWLQDHSAAVESLKRIVVDLRTGAAPDFATLSVALQAVRRLVQDGVHAG
Ga0370483_0079039_2_133	3300034124	Untreated Peat Soil	EWIRRRAAPVDVLKRILVDLRTGSPPDFATLSVALQAVRRLAQ
Ga0370514_070467_766_882	3300034199	Untreated Peat Soil	SSPVDSLKRVVVDLRTGGPPDFATLSVALQAVRRLAQD
Ga0370492_0480826_2_151	3300034282	Untreated Peat Soil	GARVDEWARRRAAPADVLKRILVDLRTGSPPDFATLSVALQAVRRLAQE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094979

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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