Metagenome / Metatranscriptome Family F094814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	66 residues
Representative Sequence	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD
Number of Associated Samples	67
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	22.86 %
% of genes near scaffold ends (potentially truncated)	34.29 %
% of genes from short scaffolds (< 2000 bps)	94.29 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.286 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.762 % of family members)
Environment Ontology (ENVO)	Unclassified (24.762 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.07% β-sheet: 0.00% Coil/Unstructured: 53.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13683	rve_3	2.86
PF02566	OsmC	1.90
PF13808	DDE_Tnp_1_assoc	0.95
PF03050	DDE_Tnp_IS66	0.95
PF13340	DUF4096	0.95
PF13701	DDE_Tnp_1_4	0.95
PF14690	zf-ISL3	0.95
PF13384	HTH_23	0.95
PF00083	Sugar_tr	0.95
PF08242	Methyltransf_12	0.95
PF07592	DDE_Tnp_ISAZ013	0.95
PF09118	GO-like_E_set	0.95
PF06983	3-dmu-9_3-mt	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.90
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.90
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.95
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.95
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
All Organisms	root	All Organisms	25.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
cellular organisms	root	All Organisms → cellular organisms	25.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.14 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.81 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.90 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.86 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	2.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.86 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.95 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.29 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.86 %
Mycolicibacterium celeriflavum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium celeriflavum	1.90 %
Pseudonocardia nigra	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia nigra	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Amycolatopsis benzoatilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis benzoatilytica	0.95 %
Pseudonocardia alaniniphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia alaniniphila	0.95 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100486051	Not Available	1348	Open in IMG/M
3300002568\|C688J35102_118967271	Not Available	619	Open in IMG/M
3300002568\|C688J35102_119832787	Not Available	788	Open in IMG/M
3300002568\|C688J35102_119853457	Not Available	794	Open in IMG/M
3300002568\|C688J35102_120359909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1013	Open in IMG/M
3300004114\|Ga0062593_102105939	Not Available	629	Open in IMG/M
3300004153\|Ga0063455_100205382	Not Available	980	Open in IMG/M
3300004463\|Ga0063356_101329589	Not Available	1053	Open in IMG/M
3300004463\|Ga0063356_105243384	Not Available	557	Open in IMG/M
3300004463\|Ga0063356_106332811	Not Available	507	Open in IMG/M
3300005334\|Ga0068869_101365633	Not Available	626	Open in IMG/M
3300005337\|Ga0070682_101688253	Not Available	550	Open in IMG/M
3300005844\|Ga0068862_102183421	Not Available	565	Open in IMG/M
3300009094\|Ga0111539_10267040	Not Available	1992	Open in IMG/M
3300009098\|Ga0105245_12037738	Not Available	627	Open in IMG/M
3300009100\|Ga0075418_12399936	Not Available	575	Open in IMG/M
3300009148\|Ga0105243_12968627	Not Available	514	Open in IMG/M
3300009545\|Ga0105237_12597695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300009553\|Ga0105249_13050350	Not Available	538	Open in IMG/M
3300009789\|Ga0126307_10054654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3122	Open in IMG/M
3300009789\|Ga0126307_10280102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1341	Open in IMG/M
3300009789\|Ga0126307_11116074	Not Available	638	Open in IMG/M
3300009840\|Ga0126313_10220465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1462	Open in IMG/M
3300009840\|Ga0126313_10280216	Not Available	1299	Open in IMG/M
3300009840\|Ga0126313_11267541	Not Available	609	Open in IMG/M
3300010037\|Ga0126304_10932910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	591	Open in IMG/M
3300010038\|Ga0126315_10544082	Not Available	744	Open in IMG/M
3300010042\|Ga0126314_10422594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	962	Open in IMG/M
3300010042\|Ga0126314_11202563	Not Available	566	Open in IMG/M
3300010044\|Ga0126310_10299929	Not Available	1106	Open in IMG/M
3300010044\|Ga0126310_10851078	Not Available	706	Open in IMG/M
3300010044\|Ga0126310_11534309	Not Available	548	Open in IMG/M
3300010045\|Ga0126311_10194562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia alaniniphila	1475	Open in IMG/M
3300010110\|Ga0126316_1086474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	505	Open in IMG/M
3300010166\|Ga0126306_10358152	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300010166\|Ga0126306_10377755	Not Available	1105	Open in IMG/M
3300010375\|Ga0105239_12351019	Not Available	620	Open in IMG/M
3300010396\|Ga0134126_11848952	Not Available	661	Open in IMG/M
3300011119\|Ga0105246_10099612	Not Available	2113	Open in IMG/M
3300011332\|Ga0126317_10470027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia nigra	676	Open in IMG/M
3300012212\|Ga0150985_107254197	Not Available	598	Open in IMG/M
3300012212\|Ga0150985_109041932	Not Available	1154	Open in IMG/M
3300012212\|Ga0150985_117677404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300012212\|Ga0150985_123191098	Not Available	834	Open in IMG/M
3300012469\|Ga0150984_105255245	Not Available	1138	Open in IMG/M
3300012469\|Ga0150984_105992369	Not Available	719	Open in IMG/M
3300012469\|Ga0150984_109419402	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300012469\|Ga0150984_109888617	Not Available	621	Open in IMG/M
3300012469\|Ga0150984_119051524	Not Available	1411	Open in IMG/M
3300012469\|Ga0150984_123670877	Not Available	942	Open in IMG/M
3300012486\|Ga0157331_1039299	Not Available	505	Open in IMG/M
3300012497\|Ga0157319_1048427	Not Available	520	Open in IMG/M
3300012502\|Ga0157347_1055819	Not Available	554	Open in IMG/M
3300012906\|Ga0157295_10125177	Not Available	739	Open in IMG/M
3300015200\|Ga0173480_10565731	Not Available	692	Open in IMG/M
3300015371\|Ga0132258_10884953	All Organisms → cellular organisms → Bacteria	2254	Open in IMG/M
3300015371\|Ga0132258_11651660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1617	Open in IMG/M
3300015371\|Ga0132258_13000633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium celeriflavum	1170	Open in IMG/M
3300015372\|Ga0132256_100644583	Not Available	1174	Open in IMG/M
3300015373\|Ga0132257_100406291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis benzoatilytica	1656	Open in IMG/M
3300015374\|Ga0132255_101900827	Not Available	905	Open in IMG/M
3300017965\|Ga0190266_11064857	Not Available	548	Open in IMG/M
3300018066\|Ga0184617_1160697	Not Available	662	Open in IMG/M
3300018073\|Ga0184624_10346476	Not Available	665	Open in IMG/M
3300018073\|Ga0184624_10375177	Not Available	635	Open in IMG/M
3300018081\|Ga0184625_10528232	Not Available	591	Open in IMG/M
3300018432\|Ga0190275_10039737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3855	Open in IMG/M
3300018432\|Ga0190275_10476616	Not Available	1277	Open in IMG/M
3300018432\|Ga0190275_11052740	Not Available	886	Open in IMG/M
3300018466\|Ga0190268_10044574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia nigra	1707	Open in IMG/M
3300018466\|Ga0190268_10355021	Not Available	915	Open in IMG/M
3300018466\|Ga0190268_11637926	Not Available	569	Open in IMG/M
3300018469\|Ga0190270_10415504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1251	Open in IMG/M
3300018469\|Ga0190270_11703340	Not Available	684	Open in IMG/M
3300018469\|Ga0190270_11773015	Not Available	672	Open in IMG/M
3300018476\|Ga0190274_10183850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1815	Open in IMG/M
3300018476\|Ga0190274_11017247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	904	Open in IMG/M
3300018481\|Ga0190271_10890179	Not Available	1015	Open in IMG/M
3300018920\|Ga0190273_10009072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4061	Open in IMG/M
3300018920\|Ga0190273_10290686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1086	Open in IMG/M
3300018920\|Ga0190273_11270605	Not Available	632	Open in IMG/M
3300018920\|Ga0190273_11290555	Not Available	629	Open in IMG/M
3300019269\|Ga0184644_1348234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300019356\|Ga0173481_10562226	Not Available	593	Open in IMG/M
3300019361\|Ga0173482_10246173	Not Available	759	Open in IMG/M
3300019362\|Ga0173479_10680061	Not Available	552	Open in IMG/M
3300019767\|Ga0190267_11214848	Not Available	554	Open in IMG/M
3300025901\|Ga0207688_10513552	Not Available	751	Open in IMG/M
3300025942\|Ga0207689_11770015	Not Available	511	Open in IMG/M
3300026118\|Ga0207675_101499236	Not Available	695	Open in IMG/M
3300028778\|Ga0307288_10344973	Not Available	599	Open in IMG/M
3300031847\|Ga0310907_10885253	Not Available	504	Open in IMG/M
3300031852\|Ga0307410_11046380	Not Available	706	Open in IMG/M
3300031852\|Ga0307410_11780236	Not Available	547	Open in IMG/M
3300031908\|Ga0310900_11157008	Not Available	642	Open in IMG/M
3300031938\|Ga0308175_100267786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium celeriflavum	1725	Open in IMG/M
3300031995\|Ga0307409_101989437	Not Available	611	Open in IMG/M
3300031996\|Ga0308176_10305436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1552	Open in IMG/M
3300031996\|Ga0308176_12827602	Not Available	516	Open in IMG/M
3300032002\|Ga0307416_100569271	Not Available	1209	Open in IMG/M
3300032013\|Ga0310906_10546831	Not Available	791	Open in IMG/M
3300032080\|Ga0326721_10018035	Not Available	2680	Open in IMG/M
3300032126\|Ga0307415_100849107	Not Available	838	Open in IMG/M
3300032126\|Ga0307415_102485998	Not Available	510	Open in IMG/M
3300032126\|Ga0307415_102535994	Not Available	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.95%
Host-Associated	Host-Associated	39.05%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.29%
Plants	Host-Associated → Plants	39.05%
Aquatic	Environmental → Aquatic	6.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.14%
Sediment	Environmental → Aquatic → Sediment	3.81%
Freshwater	Environmental → Aquatic → Freshwater	2.86%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.67%
Loam	Environmental → Terrestrial → Soil → Loam	5.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.71%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1004860512	3300000364	Soil	MPPMPQTDEATRLKLTLPPHVGETLTGWAVFELRKTPEEVLEALAEELCSNEQLRVFTAGLVAE*
C688J35102_1189672711	3300002568	Soil	MLQADHATKVKLSLPPYVAEMLTGWAVFELQKTPEEVLEALAEELCGNEQLREFVAGLVSD*
C688J35102_1198327871	3300002568	Soil	PVRGYAAGMLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
C688J35102_1198534572	3300002568	Soil	MIVRSTAERSERRPGRHAVAGLRRSPDRGYAPGMLQTGHATKLKLTLPDHVGAVLTDWAVFELQKTPEEVLEALAEELCGNEQLRAFAARLMAD*
C688J35102_1203599093	3300002568	Soil	MPLMLRTDEAARHKLTVPPHVVQTLTGWAVCELRKTPEEVLEAQWSCVNEELRAFTGGLLAE*
Ga0062593_1021059393	3300004114	Soil	AAAMLRVSPVRGYAAGMLQTDHDAQVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0063455_1002053822	3300004153	Soil	VAGLRRSPVRGYAAGMLQTDHATKVKLSLPPYVAQTLTGWAMFEPQKTPEEILEALAEERCGNEQLREFVAGLVSY*
Ga0063356_1013295892	3300004463	Arabidopsis Thaliana Rhizosphere	MLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRVFAAGLVAG*
Ga0063356_1052433842	3300004463	Arabidopsis Thaliana Rhizosphere	MPDTDEATRLKLTLPPHVAEILTGWAVFELRKTPEEVLEALAEELCGNEQLRALTAGLVGE*
Ga0063356_1063328112	3300004463	Arabidopsis Thaliana Rhizosphere	MPPMPQTDEATRLKLTLPPHVGETLTGWAVFELRKTPEEVLEALAEELTTNEQLRVFTAGLVAER*
Ga0068869_1013656332	3300005334	Miscanthus Rhizosphere	LLVPWDGTTRYAAAMPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELTTNEQLRAFAAGLLAE*
Ga0070682_1016882532	3300005337	Corn Rhizosphere	MLQTDHATKLKLTLPPHVAEVLTGWAVFELQKTPEEVLEALAEELSNNEQLRAFVAGLVAE*
Ga0068862_1021834212	3300005844	Switchgrass Rhizosphere	MPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0111539_102670402	3300009094	Populus Rhizosphere	MPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELTTNEQLRAFAAGLLAE*
Ga0105245_120377382	3300009098	Miscanthus Rhizosphere	VAGFKRSPIRGYAADMLQTDPGPKLKLSLPPHVAEMLTGWAVFELQRTPEEVLEALAEELCGNEQLRAFAAGLMQD*
Ga0075418_123999361	3300009100	Populus Rhizosphere	MLQTDHAPEVRLSLPPYVAEMLTGWAKFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0105243_129686271	3300009148	Miscanthus Rhizosphere	MQTKEVVSLKLTLPTHAAEILTGWAVFELRKTPDEILEALAEELTTNEQLRAFVAELVAD
Ga0105237_125976953	3300009545	Corn Rhizosphere	VRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0105249_130503502	3300009553	Switchgrass Rhizosphere	MQTKEVVSLKLTLPTHAAEILTGWAVFELRKTPDEILEALAEELTTNEQLRAFAAVLVAN
Ga0126307_100546546	3300009789	Serpentine Soil	MSQTDEATGLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCRNEQLRTFTAGLVGE*
Ga0126307_102801021	3300009789	Serpentine Soil	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
Ga0126307_111160742	3300009789	Serpentine Soil	MSPTDEATRLNITLPPHVAEIMTGWAVFELQKTPEEVLEALTEELCSNEQLRAFSAGLVGD*
Ga0126313_102204651	3300009840	Serpentine Soil	LSLPPYVAEMLTGWAVFELQKTPEEVQEALAEELRGNEQLRAFVAGMVAD*
Ga0126313_102802161	3300009840	Serpentine Soil	MLQTDHATKVKLSLPPYVAEMLTGWAVFELQMTPEEVLEALAEELCGNEQLQEFVASLVAD*
Ga0126313_112675411	3300009840	Serpentine Soil	PPTKLKLTRPDHVGAVLTDWAVFELQKTPEEILEALAEELCGNEQLRAFAARLMVD*
Ga0126304_109329102	3300010037	Serpentine Soil	MSQTDEATGLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCRNEQLRAFTAGLVGE*
Ga0126315_105440822	3300010038	Serpentine Soil	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVQEALAEELRGNEQLRAFVAGMVAD*
Ga0126314_104225941	3300010042	Serpentine Soil	VRGYAAGMLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
Ga0126314_112025632	3300010042	Serpentine Soil	MSQTDEATGLKLALPSHVAEVPTGWAVFELQKTPEEVLEALADELCSNEQLRAFTAGLVGE*
Ga0126310_102999293	3300010044	Serpentine Soil	MLQTDQVVGLKLSLPLHVGEILTGWAVFELQKTPEEVLELLAEELCRSEELRSYVAYLLAP*
Ga0126310_108510782	3300010044	Serpentine Soil	MLQTDHATKVKLSLPPYVAQTLTGWAMFELQKTPEEILEALAEERCGNEQLREFVAGLVSY*
Ga0126310_115343091	3300010044	Serpentine Soil	KTAKRSKLCPGRHAVAGLRRSLVRGYAAGMLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
Ga0126311_101945622	3300010045	Serpentine Soil	MPPTKLKLTRPDHVGAVLTDWAVFELQKTPEEILEALAEELCGNEQLRAFAARLMVD*
Ga0126316_10864741	3300010110	Soil	TRLKLTLPPHVAETLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0126306_103581523	3300010166	Serpentine Soil	MSQTDVATRLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCRNEQLRAFTAGVLGE*
Ga0126306_103777553	3300010166	Serpentine Soil	MSPTDEATRPNITLPPHVAEIMTGWAVFELQKTPEEVLEALAEELCSNEQLRAFSAGLVGD*
Ga0105239_123510193	3300010375	Corn Rhizosphere	VRPSGHGGVGGHAAAMLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEELLAALAEELVGNEQLRAFAAGLVTD*
Ga0134126_118489521	3300010396	Terrestrial Soil	MQTKEVVSLKLTLPKHAAEILTGWAVFELRKTPDEILEAVAEELTTNEQLRAFVAELVAD
Ga0105246_100996121	3300011119	Miscanthus Rhizosphere	MPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELTTNKQLRAFAAGLLAE*
Ga0126317_104700273	3300011332	Soil	SLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
Ga0150985_1072541972	3300012212	Avena Fatua Rhizosphere	MLQTGHATKLKLTLPDHVGAVLTDWALFELQKTPEEVLEALAEELCGNEQLRAFAVRLMAD*
Ga0150985_1090419321	3300012212	Avena Fatua Rhizosphere	HAVAGLRRSPDRGYAPGMLQTGHVTKLKLTLPDHVGAVLTDWAVFELQKTPEEVLEALAEELCGNEQLRAFAARLMAD*
Ga0150985_1176774042	3300012212	Avena Fatua Rhizosphere	VPQSDQATRLKLTLPPHVAETLTGWAVFELRKTPEEVLESLAEELAGNAQLRAFAAGLVAE*
Ga0150985_1231910982	3300012212	Avena Fatua Rhizosphere	MLQMGQDAKLKLTLPPHVAEMLTGWAVFELQKTPEEVLEALAEELCGNEQLRSFVGGLVAGS*
Ga0150984_1052552451	3300012469	Avena Fatua Rhizosphere	RGYAAGMLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD*
Ga0150984_1059923693	3300012469	Avena Fatua Rhizosphere	MLQTDQVAGLKLNLPPHVGEILNGWAVFELQKTPEEVLELLAEELCRSEELRSYVADLLAP*
Ga0150984_1094194021	3300012469	Avena Fatua Rhizosphere	LTRSLYCHAMPQSDQPTRLKLTLPPHVAETLTGWAVFELRKTPEEVLESLAEELAGNAQLRAFAAGLVAE*
Ga0150984_1098886171	3300012469	Avena Fatua Rhizosphere	PDRGYAAGMLHTDHATKVKLSLPPHVAEALTAWAVFELQKTPEEVLEALAEELCGNEQLRQFTAKLGGD*
Ga0150984_1190515243	3300012469	Avena Fatua Rhizosphere	MLQTGHATKLKLTLPDHVGAVLTDWAVFELQKTPEEILEALAEELCGNEQLRAFAARLMVD*
Ga0150984_1236708771	3300012469	Avena Fatua Rhizosphere	DEAARHKLTVPPHVVQTLTGWAVCELRKTPEEVLEAQWSCVNEELRAFTGGLLAE*
Ga0157331_10392991	3300012486	Soil	LPALTVCVRPSGHGGVGGHAAGMLRVSPVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD*
Ga0157319_10484272	3300012497	Arabidopsis Rhizosphere	RGGVGGHAAGMLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLREFAAGLVTD*
Ga0157347_10558191	3300012502	Arabidopsis Rhizosphere	MLRVSPVRGYPASMLPTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRVFAAGLVAG*
Ga0157295_101251771	3300012906	Soil	PVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTDQA*
Ga0173480_105657311	3300015200	Soil	DSHKHVLESGLFYCPALNVCVRASGHGGVGGHAAAMLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEGVLEALAEELVGNEQLRAFAAGLVTD*
Ga0132258_108849534	3300015371	Arabidopsis Rhizosphere	MPQTDEATRLKLTLPQHVAEILTAVFELRKTPEEVLEALAEELAGKEQLRAFTAGLLAE*
Ga0132258_116516605	3300015371	Arabidopsis Rhizosphere	MLRVSPVRGYPAGMLQTDHDAKLKLTLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRVFAAGLVAG*
Ga0132258_130006332	3300015371	Arabidopsis Rhizosphere	MLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVID*
Ga0132256_1006445831	3300015372	Arabidopsis Rhizosphere	MLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRA
Ga0132257_1004062912	3300015373	Arabidopsis Rhizosphere	MLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELIGNEQLRAFAAGLVTD*
Ga0132255_1019008272	3300015374	Arabidopsis Rhizosphere	MLRVSPVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVID*
Ga0190266_110648571	3300017965	Soil	LPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLLAQCATTM
Ga0184617_11606972	3300018066	Groundwater Sediment	MPQTDEAVRLTLTLPPHVGEVLTGWAVFEFRKTPEEVLEALAEELCGNERLRPFAAGLAR
Ga0184624_103464761	3300018073	Groundwater Sediment	VPPVRGYAAGMLQTAPDAKVKLSLPPHVAEMLTGWAVFELQKTPEEVLEALAEELVGNEQLLRSSLVSGL
Ga0184624_103751771	3300018073	Groundwater Sediment	KLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0184625_105282321	3300018081	Groundwater Sediment	MLRVSPVRGYAAGMLQTDHDTKVKLSLPPHVAEVLTGRAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0190275_100397373	3300018432	Soil	MPDTDEATRLKPTLPPHVAEILTGWSVFELRKTPEEVLEALAEELCGNEQLRAFVAGRN
Ga0190275_104766163	3300018432	Soil	MLQTDQVAGLKLSLPPHVGEILTGWAVFELQKTPEEVLELLAEELCRSEELRSYVAYLLA
Ga0190275_110527402	3300018432	Soil	MLQTDPATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVA
Ga0190268_100445744	3300018466	Soil	MLQTDHATKVTLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVA
Ga0190268_103550212	3300018466	Soil	MSQTEGATKLKLTLPPHVTEILTGWAVFELQRTPEEVLEALAEELARNEQLRAFTAGLVA
Ga0190268_116379262	3300018466	Soil	KLALPSHAAEVLTGWAVFELQKTPEEVLEALADELCSSEQLRAFTAGLVGE
Ga0190270_104155042	3300018469	Soil	MPDTDEATRLKPTLPPHVAEILTGWSVFELRKTPEEVLEALADELCGNEQLRAFVAGGN
Ga0190270_117033401	3300018469	Soil	VSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAG
Ga0190270_117730151	3300018469	Soil	RSTAKRSKLRSGRHAVAGLRRSLVRGYAAGMLQTDPATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD
Ga0190274_101838502	3300018476	Soil	MPDTDEATRQKPTLPPHVAEILTGWSVFELRKTPEEVLEALAEELCGNEQLRAFVAGGN
Ga0190274_110172472	3300018476	Soil	MSQTDEATGLKLALPSHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVT
Ga0190271_108901791	3300018481	Soil	KLRSGRHAVAGLRRSLVRGYAAGMLQTDPATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVAD
Ga0190273_100090724	3300018920	Soil	MPDTDEATRQKPTLPPHVAEILTGWSVFELRKTPEEVLEALAEELCGNEQLRAFVAGRN
Ga0190273_102906863	3300018920	Soil	MLQTDQVAGLKLNLPPHVGEILTGWAVFELQKAPEEVLELLAEELCRSEELRSYIAYLLA
Ga0190273_112706051	3300018920	Soil	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGLVA
Ga0190273_112905553	3300018920	Soil	LKLSLPPHVGEILTGWAVFELQKTPEEVLELLAEELCRSEELRSYVAYLLAP
Ga0184644_13482342	3300019269	Groundwater Sediment	QTDHATKVKLSLPPYVAEMLTGWAMFELQKTPEEVLEALAEELCGNEQLREFVAGLVSD
Ga0173481_105622261	3300019356	Soil	LTRSLYCRAMPQSDQATRLKLTLPPHVAETLTGWAVFELRRTPEEVLEALAEELTSNEQVRAFTAGLVAE
Ga0173482_102461732	3300019361	Soil	MLLVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQL
Ga0173479_106800611	3300019362	Soil	VWPFYCPALTVCVRASGHGGVGGHAAAMLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0190267_112148481	3300019767	Soil	CVATIPRMPTTDEATGLKLDLPPHVAEILTGWAVFELRKTPEEVLAVLAEELCSNEQLRAFAAGLLAQ
Ga0207688_105135522	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VPWDGTTRYAAAMPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELTTNEQLRAFAAGLLAE
Ga0207689_117700151	3300025942	Miscanthus Rhizosphere	MPQTDEAIRLKLTVPPHVAETLTGWAVFELQKTPEEVLEALAEELTTNEQLRAFAAGLLA
Ga0207675_1014992361	3300026118	Switchgrass Rhizosphere	ATKVKLSLPPYVAEILTGWAVFELQKTPEELLEALAEELVGNEQLRAFAAGLVTD
Ga0307288_103449731	3300028778	Soil	MLRVSPVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVG
Ga0310907_108852531	3300031847	Soil	VRGYAASMLQTAPDAKVKLSLPPHVAEMLTGWAVFELQKTAEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0307410_110463802	3300031852	Rhizosphere	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGMVA
Ga0307410_117802362	3300031852	Rhizosphere	VPTLVGMPWTDEATRLTLTLPPHVGETLTGWAVFELRKTPEEVLEALAEELCSNEQLREFTAGLVGD
Ga0310900_111570082	3300031908	Soil	MLRVSPVRGYAAGMLQTDHDATVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLREFAAGLVTD
Ga0308175_1002677864	3300031938	Soil	MLRVSPVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELRKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0307409_1019894371	3300031995	Rhizosphere	MSQTDEATGLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCSNEQLRAFTAGLVG
Ga0308176_103054362	3300031996	Soil	MLRVSPVRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0308176_128276022	3300031996	Soil	QTRHGGLRRSPDRGYAAGMLQTDHDAKVKLSLPPHVAEVLTGWAVFELRKTPEEVLEALAEELCDNEQLRVFTAGLVTE
Ga0307416_1005692712	3300032002	Rhizosphere	MSQTDEATGLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCRNEQLRAFTAGLVG
Ga0310906_105468312	3300032013	Soil	MLRVSPVRGYPAGMLQTDHDAKLKLTLPPHVAEVLTGWAVFELQKTPEEVLEALAEELVGNEQLRAFAAGLVTD
Ga0326721_100180353	3300032080	Soil	MLQTDPATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAFVAGWWQTSGRV
Ga0307415_1008491073	3300032126	Rhizosphere	MPGMPQTDEATRLKLALPPHVAEILTGWALFELRKTPEEVLEALAEELCGNEQLRAFTAGLVGD
Ga0307415_1024859981	3300032126	Rhizosphere	MLQTDHATKVKLSLPPYVAEILTGWAVFELQKTPEEVLEALAEELCGNEQLRAF
Ga0307415_1025359942	3300032126	Rhizosphere	SQTDEATRLKLALPSHVAEVLTGWAVFELQKTPEEVLEALADELCRNEQLRAFTAGLVGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences