NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094686

Metagenome / Metatranscriptome Family F094686

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094686
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 44 residues
Representative Sequence MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Number of Associated Samples 58
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.08 %
% of genes near scaffold ends (potentially truncated) 97.14 %
% of genes from short scaffolds (< 2000 bps) 90.48 %
Associated GOLD sequencing projects 50
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (68.571 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(48.571 % of family members)
Environment Ontology (ENVO) Unclassified
(69.524 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(70.476 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64
1Ga0008092_112064541
2Ga0066395_110317351
3Ga0066388_1033359812
4Ga0073909_105273112
5Ga0126370_104866681
6Ga0126378_101561071
7Ga0126378_134033611
8Ga0126379_113739771
9Ga0126381_1008923481
10Ga0126381_1011679671
11Ga0126381_1037161752
12Ga0126381_1037573991
13Ga0126383_117711851
14Ga0126369_114900532
15Ga0126369_128650072
16Ga0182041_103729331
17Ga0182041_107886761
18Ga0182041_113571532
19Ga0182033_105884643
20Ga0182033_115009562
21Ga0182035_103944802
22Ga0182035_110270071
23Ga0182035_115051772
24Ga0182035_119021222
25Ga0182032_106835052
26Ga0182032_119451781
27Ga0182032_120713682
28Ga0182034_100478853
29Ga0182034_109823511
30Ga0182034_116278451
31Ga0182034_119584351
32Ga0182040_102065641
33Ga0182037_117548631
34Ga0182037_118386312
35Ga0182039_104185171
36Ga0182038_106337872
37Ga0182038_110294981
38Ga0187820_10516812
39Ga0187820_11446702
40Ga0187801_102943681
41Ga0187803_103954342
42Ga0187819_101324972
43Ga0187783_113643911
44Ga0187781_101486841
45Ga0187782_101016831
46Ga0187805_100701391
47Ga0187766_112655202
48Ga0210387_103267331
49Ga0210387_112302471
50Ga0207802_10099021
51Ga0207817_10157102
52Ga0318528_107604021
53Ga0306917_104287771
54Ga0306917_105427751
55Ga0306917_106730341
56Ga0306917_109879103
57Ga0307469_116700152
58Ga0306918_104101113
59Ga0306918_105131911
60Ga0306918_105817571
61Ga0306918_108506452
62Ga0318554_106650121
63Ga0318521_105483421
64Ga0318521_110376741
65Ga0318547_100561263
66Ga0318557_102353771
67Ga0307478_116445911
68Ga0318495_105229091
69Ga0306919_101216141
70Ga0306919_105245733
71Ga0318544_103827211
72Ga0306925_100037741
73Ga0306925_104907851
74Ga0306925_106582431
75Ga0306925_110509561
76Ga0318520_102954931
77Ga0318520_106904911
78Ga0318520_107873732
79Ga0306923_101922401
80Ga0306923_105433971
81Ga0306923_115670831
82Ga0306923_117944442
83Ga0306923_122552051
84Ga0306921_103622541
85Ga0306921_107829211
86Ga0306921_118597721
87Ga0310912_104597713
88Ga0310912_108864402
89Ga0310916_103804552
90Ga0310913_100068227
91Ga0310913_101084211
92Ga0310913_104665611
93Ga0310909_101044253
94Ga0310909_113393581
95Ga0306922_109294081
96Ga0306922_110035642
97Ga0310911_100044541
98Ga0318532_103583621
99Ga0306924_110773231
100Ga0306924_121336541
101Ga0318540_103485321
102Ga0306920_1020024631
103Ga0306920_1021682112
104Ga0306920_1033541161
105Ga0335077_101077771
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
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Variant

510152025303540MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
68.6%31.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Tropical Forest Soil
Surface Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Tropical Rainforest Soil
5.7%10.5%22.9%48.6%3.8%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0008092_1120645413300004629Tropical Rainforest SoilMPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEAR
Ga0066395_1103173513300004633Tropical Forest SoilMPARNPREVFLMLLSNVRNRTERQAEIYQEISKHAEEPEV
Ga0066388_10333598123300005332Tropical Forest SoilMPVRNPREVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEAR
Ga0073909_1052731123300005526Surface SoilMEKDMPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEES
Ga0126370_1048666813300010358Tropical Forest SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE
Ga0126378_1015610713300010361Tropical Forest SoilMPARNPKDVFLMLLSDVRNRTERQSDIYREIGKHAEEPEVKEAIEARAFVSKQILEK
Ga0126378_1340336113300010361Tropical Forest SoilMPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVS
Ga0126379_1137397713300010366Tropical Forest SoilMEKTMPARNPKEVFLLLLSEVRNRTERQSEVYQEIAKHADEPE
Ga0126381_10089234813300010376Tropical Forest SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE
Ga0126381_10116796713300010376Tropical Forest SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEP
Ga0126381_10371617523300010376Tropical Forest SoilMPARNPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIES
Ga0126381_10375739913300010376Tropical Forest SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEI
Ga0126383_1177118513300010398Tropical Forest SoilMMAAKTPKEVFLMLLSNVRNRTERQADIYREIGKHAEEPEIKEAIEARAFV
Ga0126369_1149005323300012971Tropical Forest SoilMPARTPKEVFLMLLSNVRNRTERQADLYQEIAKHAEEPDIK
Ga0126369_1286500723300012971Tropical Forest SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIE
Ga0182041_1037293313300016294SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIK
Ga0182041_1078867613300016294SoilMPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARA
Ga0182041_1135715323300016294SoilMPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEA
Ga0182033_1058846433300016319SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSK
Ga0182033_1150095623300016319SoilMPTRTPKEVFLMLLSNVRNRTERQSEIYQELGKHAEEPEIREAV
Ga0182035_1039448023300016341SoilMPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAI
Ga0182035_1102700713300016341SoilMPARNPREVFLLLLSNVRNRAERQSDIYQEIGKHAEEPEIK
Ga0182035_1150517723300016341SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEI
Ga0182035_1190212223300016341SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEQPEIK
Ga0182032_1068350523300016357SoilMPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAF
Ga0182032_1194517813300016357SoilMPVRTPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFATKQILA
Ga0182032_1207136823300016357SoilMPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVSTQILE
Ga0182034_1004788533300016371SoilMPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0182034_1098235113300016371SoilMPARNPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEGRAFVSKQI
Ga0182034_1162784513300016371SoilMPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEP
Ga0182034_1195843513300016371SoilMPARNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFVSKQI
Ga0182040_1020656413300016387SoilMPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0182037_1175486313300016404SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARAFVSKQILA
Ga0182037_1183863123300016404SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAE
Ga0182039_1041851713300016422SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEA
Ga0182038_1063378723300016445SoilMPAKNPKEVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIEARAFV
Ga0182038_1102949813300016445SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0187820_105168123300017924Freshwater SedimentMPVRTPRDVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFASLANERR
Ga0187820_114467023300017924Freshwater SedimentMPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE
Ga0187801_1029436813300017933Freshwater SedimentMPARDPREVFLMLLSNVRNRTERAADIYQEIGKHAEEPEIKEAIEARAF
Ga0187803_1039543423300017934Freshwater SedimentMPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQILA
Ga0187819_1013249723300017943Freshwater SedimentMPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEA
Ga0187783_1136439113300017970Tropical PeatlandMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPEIK
Ga0187781_1014868413300017972Tropical PeatlandMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEVKEAIEARAFVS
Ga0187782_1010168313300017975Tropical PeatlandMPIRTPKEVFLMLLSNVRNRTERQSDIYQEIGRHAEEPEIKEAIEARAFVSKQ
Ga0187805_1007013913300018007Freshwater SedimentMPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHA
Ga0187766_1126552023300018058Tropical PeatlandMPAKNPKEVFLMLLSNVRNRTERQSQIYQEIGKHADEPEIKEAIEA
Ga0210387_1032673313300021405SoilMPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKEAIEARAFTSK
Ga0210387_1123024713300021405SoilMPARNPREVFMMLLSNVRNRTERAADIYQEISKHAEEPEIKEA
Ga0207802_100990213300026847Tropical Forest SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA
Ga0207817_101571023300026979Tropical Forest SoilMPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQIL
Ga0318528_1076040213300031561SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIR
Ga0306917_1042877713300031719SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE
Ga0306917_1054277513300031719SoilMPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA
Ga0306917_1067303413300031719SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKE
Ga0306917_1098791033300031719SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEAR
Ga0307469_1167001523300031720Hardwood Forest SoilMPAKTPKEVFLMLLSNVRNKTERQSEIYQEIGKHAEGPEINEAIGARAFVSKAGGAPLKR
Ga0306918_1041011133300031744SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAK
Ga0306918_1051319113300031744SoilMPARNPREVFLMLLSNVRNNTERATNAYQEIRKHAEDAEIKEALEA
Ga0306918_1058175713300031744SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIK
Ga0306918_1085064523300031744SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEAR
Ga0318554_1066501213300031765SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIREAVEA
Ga0318521_1054834213300031770SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVNEAIE
Ga0318521_1103767413300031770SoilMPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKE
Ga0318547_1005612633300031781SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFV
Ga0318557_1023537713300031795SoilMPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAFVSKQ
Ga0307478_1164459113300031823Hardwood Forest SoilMPARNPREVFLMLLSNVRNRTERAADIYQEIGKHAEDPEIKE
Ga0318495_1052290913300031860SoilMPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAF
Ga0306919_1012161413300031879SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKE
Ga0306919_1052457333300031879SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEA
Ga0318544_1038272113300031880SoilMPVRAPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAI
Ga0306925_1000377413300031890SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA
Ga0306925_1049078513300031890SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA
Ga0306925_1065824313300031890SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQA
Ga0306925_1105095613300031890SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0318520_1029549313300031897SoilMPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE
Ga0318520_1069049113300031897SoilMPARTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEE
Ga0318520_1078737323300031897SoilMPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIE
Ga0306923_1019224013300031910SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSKQILE
Ga0306923_1054339713300031910SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQAIEGRAF
Ga0306923_1156708313300031910SoilMPARTPKEVFLLLLSNVRNNTEKATNVYQEIGKHAEDPDVKEAIEARA
Ga0306923_1179444423300031910SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEFKEAIEARAFVSKQI
Ga0306923_1225520513300031910SoilMPAKNPREVFLMLLSNVRNRTERQSDIYQEISKHAEE
Ga0306921_1036225413300031912SoilMPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA
Ga0306921_1078292113300031912SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEE
Ga0306921_1185977213300031912SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEEPEIKEAIEGRA
Ga0310912_1045977133300031941SoilMPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPE
Ga0310912_1088644023300031941SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAEDPEV
Ga0310916_1038045523300031942SoilMPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVSKQILA
Ga0310913_1000682273300031945SoilMPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEA
Ga0310913_1010842113300031945SoilMAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEE
Ga0310913_1046656113300031945SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPE
Ga0310909_1010442533300031947SoilMPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEARA
Ga0310909_1133935813300031947SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARTFVS
Ga0306922_1092940813300032001SoilMPAKTPKEVFLMLLSNVRNRTERQSDIYRQIGKHAE
Ga0306922_1100356423300032001SoilMPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVS
Ga0310911_1000445413300032035SoilMPARTPKEVFLMLLSNVRNRTERQAEIYQEIGNHAEDP
Ga0318532_1035836213300032051SoilMPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE
Ga0306924_1107732313300032076SoilMPARNPREVFLMLLSNVRNNTERATNAYQEIGKHAEDA
Ga0306924_1213365413300032076SoilMPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA
Ga0318540_1034853213300032094SoilMPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPRIKETIDGRAFVSKQCLA
Ga0306920_10200246313300032261SoilMPVRTPKEVFLMLLSEVRNRTERQSNIYQEIGNHAEEPEIREAI
Ga0306920_10216821123300032261SoilMPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEE
Ga0306920_10335411613300032261SoilMPPRNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEP
Ga0335077_1010777713300033158SoilMPPKTPKDVFLMMLSNVRKNTERAGKIYDEIGKAAEEPEIK


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