Basic Information | |
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Family ID | F094686 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 44 residues |
Representative Sequence | MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE |
Number of Associated Samples | 58 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 98.08 % |
% of genes near scaffold ends (potentially truncated) | 97.14 % |
% of genes from short scaffolds (< 2000 bps) | 90.48 % |
Associated GOLD sequencing projects | 50 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (68.571 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.571 % of family members) |
Environment Ontology (ENVO) | Unclassified (69.524 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (70.476 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Tropical Forest Soil Surface Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0008092_112064541 | 3300004629 | Tropical Rainforest Soil | MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEAR |
Ga0066395_110317351 | 3300004633 | Tropical Forest Soil | MPARNPREVFLMLLSNVRNRTERQAEIYQEISKHAEEPEV |
Ga0066388_1033359812 | 3300005332 | Tropical Forest Soil | MPVRNPREVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEAR |
Ga0073909_105273112 | 3300005526 | Surface Soil | MEKDMPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEES |
Ga0126370_104866681 | 3300010358 | Tropical Forest Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE |
Ga0126378_101561071 | 3300010361 | Tropical Forest Soil | MPARNPKDVFLMLLSDVRNRTERQSDIYREIGKHAEEPEVKEAIEARAFVSKQILEK |
Ga0126378_134033611 | 3300010361 | Tropical Forest Soil | MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVS |
Ga0126379_113739771 | 3300010366 | Tropical Forest Soil | MEKTMPARNPKEVFLLLLSEVRNRTERQSEVYQEIAKHADEPE |
Ga0126381_1008923481 | 3300010376 | Tropical Forest Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAE |
Ga0126381_1011679671 | 3300010376 | Tropical Forest Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEP |
Ga0126381_1037161752 | 3300010376 | Tropical Forest Soil | MPARNPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIES |
Ga0126381_1037573991 | 3300010376 | Tropical Forest Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEI |
Ga0126383_117711851 | 3300010398 | Tropical Forest Soil | MMAAKTPKEVFLMLLSNVRNRTERQADIYREIGKHAEEPEIKEAIEARAFV |
Ga0126369_114900532 | 3300012971 | Tropical Forest Soil | MPARTPKEVFLMLLSNVRNRTERQADLYQEIAKHAEEPDIK |
Ga0126369_128650072 | 3300012971 | Tropical Forest Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIE |
Ga0182041_103729331 | 3300016294 | Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIK |
Ga0182041_107886761 | 3300016294 | Soil | MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARA |
Ga0182041_113571532 | 3300016294 | Soil | MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEA |
Ga0182033_105884643 | 3300016319 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSK |
Ga0182033_115009562 | 3300016319 | Soil | MPTRTPKEVFLMLLSNVRNRTERQSEIYQELGKHAEEPEIREAV |
Ga0182035_103944802 | 3300016341 | Soil | MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAI |
Ga0182035_110270071 | 3300016341 | Soil | MPARNPREVFLLLLSNVRNRAERQSDIYQEIGKHAEEPEIK |
Ga0182035_115051772 | 3300016341 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEI |
Ga0182035_119021222 | 3300016341 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEQPEIK |
Ga0182032_106835052 | 3300016357 | Soil | MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAF |
Ga0182032_119451781 | 3300016357 | Soil | MPVRTPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFATKQILA |
Ga0182032_120713682 | 3300016357 | Soil | MPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVSTQILE |
Ga0182034_100478853 | 3300016371 | Soil | MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE |
Ga0182034_109823511 | 3300016371 | Soil | MPARNPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEGRAFVSKQI |
Ga0182034_116278451 | 3300016371 | Soil | MPARNPREVFLLLLSNVRNRTERQSDIYQEIGKHAEEP |
Ga0182034_119584351 | 3300016371 | Soil | MPARNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFVSKQI |
Ga0182040_102065641 | 3300016387 | Soil | MPAKTLKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE |
Ga0182037_117548631 | 3300016404 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARAFVSKQILA |
Ga0182037_118386312 | 3300016404 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAE |
Ga0182039_104185171 | 3300016422 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEA |
Ga0182038_106337872 | 3300016445 | Soil | MPAKNPKEVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEVKEAIEARAFV |
Ga0182038_110294981 | 3300016445 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAE |
Ga0187820_10516812 | 3300017924 | Freshwater Sediment | MPVRTPRDVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFASLANERR |
Ga0187820_11446702 | 3300017924 | Freshwater Sediment | MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE |
Ga0187801_102943681 | 3300017933 | Freshwater Sediment | MPARDPREVFLMLLSNVRNRTERAADIYQEIGKHAEEPEIKEAIEARAF |
Ga0187803_103954342 | 3300017934 | Freshwater Sediment | MPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQILA |
Ga0187819_101324972 | 3300017943 | Freshwater Sediment | MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIEA |
Ga0187783_113643911 | 3300017970 | Tropical Peatland | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPEIK |
Ga0187781_101486841 | 3300017972 | Tropical Peatland | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEVKEAIEARAFVS |
Ga0187782_101016831 | 3300017975 | Tropical Peatland | MPIRTPKEVFLMLLSNVRNRTERQSDIYQEIGRHAEEPEIKEAIEARAFVSKQ |
Ga0187805_100701391 | 3300018007 | Freshwater Sediment | MPARTPKEVFLMLLSNVRNRTERQSNIYQEIGKHA |
Ga0187766_112655202 | 3300018058 | Tropical Peatland | MPAKNPKEVFLMLLSNVRNRTERQSQIYQEIGKHADEPEIKEAIEA |
Ga0210387_103267331 | 3300021405 | Soil | MPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKEAIEARAFTSK |
Ga0210387_112302471 | 3300021405 | Soil | MPARNPREVFMMLLSNVRNRTERAADIYQEISKHAEEPEIKEA |
Ga0207802_10099021 | 3300026847 | Tropical Forest Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA |
Ga0207817_10157102 | 3300026979 | Tropical Forest Soil | MPARTPKEVFLMLLSNVRNRTERQSEVYQEIGKHAEEPEIKEAIEARAFVSKQIL |
Ga0318528_107604021 | 3300031561 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIR |
Ga0306917_104287771 | 3300031719 | Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKE |
Ga0306917_105427751 | 3300031719 | Soil | MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEA |
Ga0306917_106730341 | 3300031719 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKE |
Ga0306917_109879103 | 3300031719 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEAR |
Ga0307469_116700152 | 3300031720 | Hardwood Forest Soil | MPAKTPKEVFLMLLSNVRNKTERQSEIYQEIGKHAEGPEINEAIGARAFVSKAGGAPLKR |
Ga0306918_104101113 | 3300031744 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAK |
Ga0306918_105131911 | 3300031744 | Soil | MPARNPREVFLMLLSNVRNNTERATNAYQEIRKHAEDAEIKEALEA |
Ga0306918_105817571 | 3300031744 | Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIK |
Ga0306918_108506452 | 3300031744 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEAR |
Ga0318554_106650121 | 3300031765 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEIGKHAEEPEIREAVEA |
Ga0318521_105483421 | 3300031770 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVNEAIE |
Ga0318521_110376741 | 3300031770 | Soil | MPVRTPKEVFLMLLSNVRNRTERQSTIYQEIGKHAEEPEIKE |
Ga0318547_100561263 | 3300031781 | Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAIEARAFV |
Ga0318557_102353771 | 3300031795 | Soil | MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAFVSKQ |
Ga0307478_116445911 | 3300031823 | Hardwood Forest Soil | MPARNPREVFLMLLSNVRNRTERAADIYQEIGKHAEDPEIKE |
Ga0318495_105229091 | 3300031860 | Soil | MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEAIEARAF |
Ga0306919_101216141 | 3300031879 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKE |
Ga0306919_105245733 | 3300031879 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPEIKEAIEA |
Ga0318544_103827211 | 3300031880 | Soil | MPVRAPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAI |
Ga0306925_100037741 | 3300031890 | Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA |
Ga0306925_104907851 | 3300031890 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA |
Ga0306925_106582431 | 3300031890 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQA |
Ga0306925_110509561 | 3300031890 | Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE |
Ga0318520_102954931 | 3300031897 | Soil | MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAE |
Ga0318520_106904911 | 3300031897 | Soil | MPARTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEE |
Ga0318520_107873732 | 3300031897 | Soil | MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEEPEIKEAIE |
Ga0306923_101922401 | 3300031910 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEAKEAIEARAFVSKQILE |
Ga0306923_105433971 | 3300031910 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKYAEEPEIKQAIEGRAF |
Ga0306923_115670831 | 3300031910 | Soil | MPARTPKEVFLLLLSNVRNNTEKATNVYQEIGKHAEDPDVKEAIEARA |
Ga0306923_117944442 | 3300031910 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEFKEAIEARAFVSKQI |
Ga0306923_122552051 | 3300031910 | Soil | MPAKNPREVFLMLLSNVRNRTERQSDIYQEISKHAEE |
Ga0306921_103622541 | 3300031912 | Soil | MPAKNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEA |
Ga0306921_107829211 | 3300031912 | Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEE |
Ga0306921_118597721 | 3300031912 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYQEISKHAEEPEIKEAIEGRA |
Ga0310912_104597713 | 3300031941 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPE |
Ga0310912_108864402 | 3300031941 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYQEIGKHAEDPEV |
Ga0310916_103804552 | 3300031942 | Soil | MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPQIKEAIDGRAFVSKQILA |
Ga0310913_100068227 | 3300031945 | Soil | MPAKTPREVFLMLLSEVRNRTERQSNIYQEFGKHAEEPEIKEA |
Ga0310913_101084211 | 3300031945 | Soil | MAARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEE |
Ga0310913_104665611 | 3300031945 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEEPE |
Ga0310909_101044253 | 3300031947 | Soil | MPARTPREVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEIKEAVEARA |
Ga0310909_113393581 | 3300031947 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHAEEPEVKEAIEARTFVS |
Ga0306922_109294081 | 3300032001 | Soil | MPAKTPKEVFLMLLSNVRNRTERQSDIYRQIGKHAE |
Ga0306922_110035642 | 3300032001 | Soil | MPARNPREVFLMLLSNVRNRTERQSDIYQEIGKHAEEPEIKEAIEARAFVS |
Ga0310911_100044541 | 3300032035 | Soil | MPARTPKEVFLMLLSNVRNRTERQAEIYQEIGNHAEDP |
Ga0318532_103583621 | 3300032051 | Soil | MPVRTPKEVFLMLLSNVRNRTERQSNIYQEIGKHAEE |
Ga0306924_110773231 | 3300032076 | Soil | MPARNPREVFLMLLSNVRNNTERATNAYQEIGKHAEDA |
Ga0306924_121336541 | 3300032076 | Soil | MPARTPKEVFLMLLSNVRNRTERQSEIYQEIGKHA |
Ga0318540_103485321 | 3300032094 | Soil | MPARNPKEVFLMLLSNVRNRTERQSEIYQEIGNHAEDPRIKETIDGRAFVSKQCLA |
Ga0306920_1020024631 | 3300032261 | Soil | MPVRTPKEVFLMLLSEVRNRTERQSNIYQEIGNHAEEPEIREAI |
Ga0306920_1021682112 | 3300032261 | Soil | MPARTPKEVFLMLLSNVRNRTERQADIYQEFGKHAEE |
Ga0306920_1033541161 | 3300032261 | Soil | MPPRNPKEVFIMLLSNVRNRTERQSEIYQEIGKHAEEP |
Ga0335077_101077771 | 3300033158 | Soil | MPPKTPKDVFLMMLSNVRKNTERAGKIYDEIGKAAEEPEIK |
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