Metagenome / Metatranscriptome Family F094592

Basic Information
Family ID	F094592
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	55 residues
Representative Sequence	AIQDAPYIVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Number of Associated Samples	103
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.642 % of family members)
Environment Ontology (ENVO)	Unclassified (37.736 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.566 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.98% β-sheet: 32.08% Coil/Unstructured: 50.94%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01476	LysM	66.04
PF13560	HTH_31	2.83
PF01464	SLT	2.83
PF07992	Pyr_redox_2	0.94
PF00224	PK	0.94
PF00903	Glyoxalase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	63.21 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	63.21 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	2.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.94 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.94 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.94 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_11324112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	872	Open in IMG/M
3300000887\|AL16A1W_10022484	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1254	Open in IMG/M
3300000887\|AL16A1W_10200227	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1266	Open in IMG/M
3300001333\|A21PFW6_1025661	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1048	Open in IMG/M
3300001526\|A105W1_1163815	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1166	Open in IMG/M
3300004081\|Ga0063454_100537680	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	834	Open in IMG/M
3300004114\|Ga0062593_100648537	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1018	Open in IMG/M
3300004114\|Ga0062593_102647203	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300004156\|Ga0062589_102314157	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300004479\|Ga0062595_100602794	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	856	Open in IMG/M
3300004643\|Ga0062591_101142068	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	754	Open in IMG/M
3300005093\|Ga0062594_102171916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	599	Open in IMG/M
3300005184\|Ga0066671_10095271	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1639	Open in IMG/M
3300005293\|Ga0065715_10098291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3568	Open in IMG/M
3300005328\|Ga0070676_10212651	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005329\|Ga0070683_100142426	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2271	Open in IMG/M
3300005355\|Ga0070671_101140453	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005356\|Ga0070674_100208942	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1512	Open in IMG/M
3300005434\|Ga0070709_10352243	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1088	Open in IMG/M
3300005440\|Ga0070705_101757127	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005451\|Ga0066681_10326914	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	940	Open in IMG/M
3300005467\|Ga0070706_100219508	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1775	Open in IMG/M
3300005536\|Ga0070697_100064355	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2995	Open in IMG/M
3300005549\|Ga0070704_100329923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1281	Open in IMG/M
3300005549\|Ga0070704_100972980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	766	Open in IMG/M
3300005558\|Ga0066698_10509258	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300005566\|Ga0066693_10024086	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1872	Open in IMG/M
3300005598\|Ga0066706_10471131	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300005719\|Ga0068861_101042689	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	783	Open in IMG/M
3300005843\|Ga0068860_101971979	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	605	Open in IMG/M
3300005887\|Ga0075292_1063053	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005980\|Ga0066798_10073352	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1033	Open in IMG/M
3300006894\|Ga0079215_11296012	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300006954\|Ga0079219_10053142	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1757	Open in IMG/M
3300007822\|Ga0104325_101607	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1024	Open in IMG/M
3300009098\|Ga0105245_12343605	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300009143\|Ga0099792_10973159	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300009177\|Ga0105248_13196964	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300009545\|Ga0105237_11945011	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300010146\|Ga0126320_1296492	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300010301\|Ga0134070_10232362	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	685	Open in IMG/M
3300010364\|Ga0134066_10068369	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	960	Open in IMG/M
3300010397\|Ga0134124_11367104	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	733	Open in IMG/M
3300010399\|Ga0134127_10212152	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1809	Open in IMG/M
3300012204\|Ga0137374_10389293	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1111	Open in IMG/M
3300012206\|Ga0137380_11299298	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300012208\|Ga0137376_10177300	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1839	Open in IMG/M
3300012209\|Ga0137379_10826255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	831	Open in IMG/M
3300012210\|Ga0137378_11281815	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	649	Open in IMG/M
3300012530\|Ga0136635_10019463	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300012925\|Ga0137419_10548006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	924	Open in IMG/M
3300012957\|Ga0164303_10307919	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	937	Open in IMG/M
3300012961\|Ga0164302_10802462	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	711	Open in IMG/M
3300013307\|Ga0157372_12035511	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	660	Open in IMG/M
3300014054\|Ga0120135_1045695	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300014056\|Ga0120125_1035319	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1078	Open in IMG/M
3300014487\|Ga0182000_10475185	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300015052\|Ga0137411_1298719	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4632	Open in IMG/M
3300015245\|Ga0137409_11244952	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300018071\|Ga0184618_10033495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1781	Open in IMG/M
3300018476\|Ga0190274_11229778	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	834	Open in IMG/M
3300018482\|Ga0066669_10685548	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300019868\|Ga0193720_1001784	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2853	Open in IMG/M
3300019870\|Ga0193746_1020424	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300019878\|Ga0193715_1006598	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2478	Open in IMG/M
3300019879\|Ga0193723_1032027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1581	Open in IMG/M
3300019881\|Ga0193707_1073877	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1054	Open in IMG/M
3300019888\|Ga0193751_1229175	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300019996\|Ga0193693_1006630	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2478	Open in IMG/M
3300019999\|Ga0193718_1103050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	582	Open in IMG/M
3300020008\|Ga0193757_1012498	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	833	Open in IMG/M
3300020022\|Ga0193733_1003364	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4625	Open in IMG/M
3300021413\|Ga0193750_1013783	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2003	Open in IMG/M
3300021968\|Ga0193698_1007570	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1356	Open in IMG/M
3300022694\|Ga0222623_10121507	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1017	Open in IMG/M
3300022898\|Ga0247745_1033412	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	774	Open in IMG/M
3300024279\|Ga0247692_1062575	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300025905\|Ga0207685_10570862	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300025906\|Ga0207699_11089162	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300025910\|Ga0207684_10559113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	978	Open in IMG/M
3300025912\|Ga0207707_11133199	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	636	Open in IMG/M
3300025916\|Ga0207663_11716281	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300025921\|Ga0207652_11140597	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300025928\|Ga0207700_11653280	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300025938\|Ga0207704_10097850	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1947	Open in IMG/M
3300025944\|Ga0207661_11831451	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300025945\|Ga0207679_11852141	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300025981\|Ga0207640_11548175	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300026023\|Ga0207677_10678554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	912	Open in IMG/M
3300026078\|Ga0207702_11621080	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300026118\|Ga0207675_102348064	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300026320\|Ga0209131_1134546	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1269	Open in IMG/M
3300026323\|Ga0209472_1253277	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300026524\|Ga0209690_1098518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1201	Open in IMG/M
3300026542\|Ga0209805_1252989	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	691	Open in IMG/M
3300027775\|Ga0209177_10430874	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300028713\|Ga0307303_10057128	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	838	Open in IMG/M
3300028717\|Ga0307298_10275838	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300028811\|Ga0307292_10367949	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	608	Open in IMG/M
3300028814\|Ga0307302_10017132	All Organisms → cellular organisms → Bacteria	3266	Open in IMG/M
3300028872\|Ga0307314_10110798	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	759	Open in IMG/M
3300031114\|Ga0308187_10260747	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	634	Open in IMG/M
3300031199\|Ga0307495_10251226	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300032180\|Ga0307471_101871873	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	750	Open in IMG/M
3300033412\|Ga0310810_10585004	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1078	Open in IMG/M
3300034817\|Ga0373948_0166407	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.02%
Host-Associated	Host-Associated	16.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.25%
Plants	Host-Associated → Plants	16.98%
Aquatic	Environmental → Aquatic	3.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.49%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Sediment	Environmental → Aquatic → Sediment	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.26%
Loam	Environmental → Terrestrial → Soil → Loam	15.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Ice	Environmental → Aquatic → Freshwater → Ice	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001526	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-5cm-1A)- 1 week illumina	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007822	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 Soapdenovo	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019870	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0434.00005180	2162886012	Miscanthus Rhizosphere	YIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR
AL16A1W_100224841	3300000887	Permafrost	HLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
AL16A1W_102002273	3300000887	Permafrost	NATQRAIQDAPYIIYSRFHLAHESWRMGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
A21PFW6_10256613	3300001333	Permafrost	EICLPDRPLSDIEDDAIQRSIQDAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
A105W1_11638151	3300001526	Permafrost	EDDAARRSIQEAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0063454_1005376801	3300004081	Soil	AVHKAIQDAPYIIYRRYHLAHESWRLGIVYSISPPTVGDIQILSAYRAGHEARPHLV*
Ga0062593_1006485371	3300004114	Soil	LEIEDNAAYKAIQDAPYIIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
Ga0062593_1026472031	3300004114	Soil	QDAPYIIYKRYHLAHESWRLGIVYSVAPPTVGDILILSAYRAGHEARPHLV*
Ga0062589_1023141572	3300004156	Soil	EDNAAYKAIQDAPYIIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0062595_1006027943	3300004479	Soil	LAEIEDNAVHRAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLVDLQ*
Ga0062591_1011420681	3300004643	Soil	DEAVSKAIQDAPYIIYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHESRPRLV*
Ga0062594_1021719163	3300005093	Soil	AVLKAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0066671_100952714	3300005184	Soil	QRAIQDAPYITYRRYHLAHESWRLGIVYSLAAPTVGDIQILSAYRAGHEARPHLV*
Ga0065715_100982911	3300005293	Miscanthus Rhizosphere	YIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR*
Ga0070676_102126511	3300005328	Miscanthus Rhizosphere	SEIEDNAVQRAIQDAPYIVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0070683_1001424264	3300005329	Corn Rhizosphere	LSDIQDDASRRFIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0070671_1011404533	3300005355	Switchgrass Rhizosphere	DNAVQKAIQDAPYITYKRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0070674_1002089421	3300005356	Miscanthus Rhizosphere	YKRYHLAYASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV*
Ga0070709_103522433	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLV*
Ga0070705_1017571271	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	YLTYRRYHLAHESWRLGIVYSINPPTVGDIQILSAYRAGHEASPHLV*
Ga0066681_103269141	3300005451	Soil	LRRAIQDAPYITYRRYHLAHESWRLGIVYSLAAPTVGDIQILSAYRAGHEARPHLV*
Ga0070706_1002195084	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RYHLAHESWRLGIVYSISPPTVGDIQILSAYRAGHEARPHLV*
Ga0070697_1000643555	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IEDNATQRAIQDAPYIIYRRYHLAHESWRLGIVYSVSPPTVGDIQILSAYRAGHEARPHLV*
Ga0070704_1003299231	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PDKPLSEIEDNATQRAIQDAPYIIYRRYHLAHESWRLGIVYSVSPPTVGDIQILSAYRAGHEARPHLV*
Ga0070704_1009729801	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	APYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR*
Ga0066698_105092583	3300005558	Soil	AIQDAPYIVYHRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
Ga0066693_100240864	3300005566	Soil	TYRRYHLAHESWRLGIVYSLAAPTVGDIQILSAYRAGHEARPHLV*
Ga0066706_104711313	3300005598	Soil	IQDAPYIVYHRYHLAHESWRLGIVYSVTPPTVGDIQILSAYRAGHEARPHLV*
Ga0068861_1010426891	3300005719	Switchgrass Rhizosphere	RAIQDAPYLTYKRYHLAYASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV*
Ga0068860_1019719793	3300005843	Switchgrass Rhizosphere	HLAHESWRLGIVYSLTPPTVGDIQILSAYRAGHEARPHLV*
Ga0075292_10630532	3300005887	Rice Paddy Soil	RYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0066798_100733523	3300005980	Soil	PYIIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
Ga0079215_112960122	3300006894	Agricultural Soil	APYIIYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0079219_100531421	3300006954	Agricultural Soil	KPLAEIEDEAIHRAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQVLSAYRAGHEARPHLVDL*
Ga0104325_1016071	3300007822	Soil	IYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGNEARPHLV*
Ga0105245_123436051	3300009098	Miscanthus Rhizosphere	LEIEDNAIQKAIQDAPYITYNRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0099792_109731592	3300009143	Vadose Zone Soil	CLPDKPLSEIEDNAVLKAIQEAPYLVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0105248_131969641	3300009177	Switchgrass Rhizosphere	KPLLEIEDNAVQKAIQDAPYITYKRYHLAHESWRLGIVYSLTPPTVGDIQILSAYRAGHEARPHLV*
Ga0105237_119450111	3300009545	Corn Rhizosphere	IYKRYHLAHESWRLGIVFSVAPPTVGDIQILSAYRAGHESRPHLV*
Ga0126320_12964922	3300010146	Soil	RYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLVDLQ*
Ga0134070_102323621	3300010301	Grasslands Soil	IQKAIQDAPYIVYHRYHLAHESWRLGIVYSVTPPTVGDIQILSAYRAGHEARPHLV*
Ga0134066_100683693	3300010364	Grasslands Soil	HLAHESWRLGIVYSLAAPTVGDIQILSAYRAGHEARPHLV*
Ga0134124_113671041	3300010397	Terrestrial Soil	PLAEIEDDAVDKSIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR*
Ga0134127_102121524	3300010399	Terrestrial Soil	AIQDAPYIVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0137374_103892933	3300012204	Vadose Zone Soil	IDDDASIAAIQDAPYIIYKRFDLPDEAPRLGIVYAVAAPTVGDIQIISAYRAGEESRPRLA*
Ga0137380_112992983	3300012206	Vadose Zone Soil	RAIQDAPYITYQRYHLAHESWRLGIVYSISPPTVGDIQILSAYRAGHEARPHLV*
Ga0137376_101773004	3300012208	Vadose Zone Soil	IQDAPYITYRRYHLAHESWRLGIVYSLSPPTVGDIQILSAYRAGHEARPHLVV*
Ga0137379_108262551	3300012209	Vadose Zone Soil	LPDKPLLEIEDNALLRAIQDAPYITYQRYHLAHESWRLGIVYSISPPTVGDIQILSAYRAGHEARPHLV*
Ga0137378_112818151	3300012210	Vadose Zone Soil	DAPYITYRRYHLARESWRLGIVYSIAPPTVGDIQILSASRAGHEARPHLV*
Ga0136635_100194631	3300012530	Polar Desert Sand	PPPEICLPDKPLSEIEDDAPRRAIQDAPYIIYRRFHLAAESWRLGIVYAVSPPTVGDIQILSAYRAGHESRPRLV*
Ga0137419_105480061	3300012925	Vadose Zone Soil	YLVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0164303_103079191	3300012957	Soil	HRAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLVDLQ*
Ga0164302_108024621	3300012961	Soil	IEDDAPRRFIQDAPYIIYRRYHLAQESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
Ga0157372_120355113	3300013307	Corn Rhizosphere	QDAPYLTYKRYHLAYASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV*
Ga0120135_10456953	3300014054	Permafrost	APYIIYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLA*
Ga0120125_10353191	3300014056	Permafrost	ATQRAIQDAPYIIYSRFHLAHESWRMGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
Ga0182000_104751851	3300014487	Soil	LAEMEDDAVHKSIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR*
Ga0137411_12987196	3300015052	Vadose Zone Soil	VKRAIQDAPYIVYQRFHLAHESWRLGIVYSIAAPTVGDIQILSAYRAGHEARPHLV*
Ga0137409_112449522	3300015245	Vadose Zone Soil	ICLPDKPLSEIEDNAVLRAIQEAPYLVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV*
Ga0184618_100334951	3300018071	Groundwater Sediment	DNAVQLAIQDAPYIVYQRFHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPRLV
Ga0190274_112297783	3300018476	Soil	ESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0066669_106855483	3300018482	Grasslands Soil	AVQRAIQDAPYITYKRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0193720_10017841	3300019868	Soil	DKPLSEIEDNAVKRAIQDAPYLVYQRFHLAHESWRLGIVYSIAAPTVGDIQILSAYRAGHEARPHLV
Ga0193746_10204243	3300019870	Soil	LPDKPLSEIEDNAAKKAIQDAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLV
Ga0193715_10065981	3300019878	Soil	RAIQDAPYIVYGRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0193723_10320274	3300019879	Soil	DAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0193707_10738771	3300019881	Soil	DNATQKAIQDAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0193751_12291751	3300019888	Soil	CLPDRPLSDIEDDAVRRPIQDAPYIIYSRYHLAHESWRLGIVYSIAPPTVGDIQMLSAYRAGHEARPHLV
Ga0193693_10066301	3300019996	Soil	IIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0193718_11030501	3300019999	Soil	IIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGNEARPHLV
Ga0193757_10124983	3300020008	Soil	TQKAIQDAPYIIYRRYHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV
Ga0193733_10033647	3300020022	Soil	DAPYIVYGRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0193750_10137834	3300021413	Soil	YIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV
Ga0193698_10075701	3300021968	Soil	DNAAMKAIQDAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLV
Ga0222623_101215071	3300022694	Groundwater Sediment	HLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0247745_10334121	3300022898	Soil	KRYHLAQASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV
Ga0247692_10625752	3300024279	Soil	IIYKRYHLAHESWRLGIVFSVAPPTVGDIQILSAYRAGHESRPHLV
Ga0207685_105708621	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AIQDAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDIQILSAYRAGHESRPHLV
Ga0207699_110891621	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLV
Ga0207684_105591131	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EDNALLKAIQDAPYITYHRYHLAHESWRLGIVYSISPPTVGDIQILSAYRAGHEARPHLV
Ga0207707_111331993	3300025912	Corn Rhizosphere	TYKRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV
Ga0207663_117162812	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	PLSEIEDNAPRKAIQDAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDILILSAYRAGHESRPHLV
Ga0207652_111405971	3300025921	Corn Rhizosphere	RAIQDAPYIVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0207700_116532802	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KAIQDAPYIIYKRYHLAHESWRLGIVFSVAPPTVGDIQILSAYRAGHESRPHLV
Ga0207704_100978504	3300025938	Miscanthus Rhizosphere	AIQDAPYLTYKRYHLAYASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV
Ga0207661_118314513	3300025944	Corn Rhizosphere	DDAHLTVIQDAPYIIYKRHQLPADSPRLGVVYSLDAPTVGDIQVISAYRAGDESRPKLA
Ga0207679_118521411	3300025945	Corn Rhizosphere	DAPYIIYRRYHLAQESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV
Ga0207640_115481753	3300025981	Corn Rhizosphere	KPLSEIEDNAVQRAIQDAPYIVYRRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0207677_106785543	3300026023	Miscanthus Rhizosphere	EIEDNAVLKAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV
Ga0207702_116210801	3300026078	Corn Rhizosphere	DDAVDKSIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR
Ga0207675_1023480641	3300026118	Switchgrass Rhizosphere	ERVWRAIQDAPYLTYKRYHLAQASWRLGIVYSLNPPTVGDIQILSAYRAGHEARPHLV
Ga0209131_11345463	3300026320	Grasslands Soil	SEIEDNATQRAIQDAPYIIYRRYHLAHESWRLGIVYSVSPPTVGDIQILSAYRAGHEARPHLV
Ga0209472_12532771	3300026323	Soil	LRRAIQDAPYITYRRYHLAHESWRLGIVYSLAAPTVGDIQILSAYRAGHEARPHLV
Ga0209690_10985183	3300026524	Soil	RYHLAHESWRLGIVYSVTPPTVGDIQILSAYRAGHEARPHLV
Ga0209805_12529893	3300026542	Soil	QRAIQDAPYITYKRFHLAHESWRLGIVYSLSPPTVGDIQILSAYRAGHEARPHLV
Ga0209177_104308742	3300027775	Agricultural Soil	KPLAEIEDEAIHRAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQVLSAYRAGHEARPHLVDL
Ga0307303_100571281	3300028713	Soil	CLPDKPLSEIEDNAVQRAIQDAPYIVYGRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0307298_102758383	3300028717	Soil	YGRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0307292_103679493	3300028811	Soil	AIQDAPYIVYQRFHLAHESWRLGIVYSIAAPTVGDIQILSAYRAGHEARPHLV
Ga0307302_100171321	3300028814	Soil	YHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0307314_101107981	3300028872	Soil	AHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0308187_102607471	3300031114	Soil	QDAPYIVYGRYHLAHESWRLGIVYSLAPPTVGDIQILSAYRAGHEARPHLV
Ga0307495_102512262	3300031199	Soil	PYIIYKRYHLAHESWRLGIVFSVAPPTVGDIQILSAYRAGHESRPHLV
Ga0307471_1018718731	3300032180	Hardwood Forest Soil	IQDAPYLTYRRYHLAHESWRLGIVYSINPPTVGDIQILSAYRAGHEARPHLV
Ga0310810_105850041	3300033412	Soil	YIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLVDLQ
Ga0373948_0166407_392_559	3300034817	Rhizosphere Soil	IQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILSAYRAGNEARPHLVDLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094592

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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