Metagenome / Metatranscriptome Family F094586

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094586
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	54 residues
Representative Sequence	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSFLVPETVLSRRR
Number of Associated Samples	88
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.36 %
% of genes near scaffold ends (potentially truncated)	27.36 %
% of genes from short scaffolds (< 2000 bps)	80.19 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.019 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (24.528 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.547 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.80% β-sheet: 4.88% Coil/Unstructured: 57.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04679	DNA_ligase_A_C	19.81
PF00211	Guanylate_cyc	6.60
PF04402	SIMPL	6.60
PF00072	Response_reg	3.77
PF03640	Lipoprotein_15	2.83
PF01408	GFO_IDH_MocA	1.89
PF00082	Peptidase_S8	1.89
PF04294	VanW	1.89
PF04226	Transgly_assoc	1.89
PF02771	Acyl-CoA_dh_N	1.89
PF04228	Zn_peptidase	1.89
PF00196	GerE	1.89
PF04248	NTP_transf_9	1.89
PF12229	PG_binding_4	1.89
PF04993	TfoX_N	0.94
PF12344	UvrB	0.94
PF01896	DNA_primase_S	0.94
PF13474	SnoaL_3	0.94
PF00027	cNMP_binding	0.94
PF10672	Methyltrans_SAM	0.94
PF03796	DnaB_C	0.94
PF00004	AAA	0.94
PF00753	Lactamase_B	0.94
PF02518	HATPase_c	0.94
PF02781	G6PD_C	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	19.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	6.60
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	6.60
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	6.60
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	6.60
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	2.83
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.89
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.89
COG2321	Predicted metalloprotease	General function prediction only [R]	1.89
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	1.89
COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	Defense mechanisms [V]	1.89
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.94
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.94
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.94
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.02 %
Unclassified	root	N/A	16.98 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.51 %
Unclassified	root	N/A	16.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	27.36 %
Unclassified	root	N/A	16.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13.21 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	22.64 %
Unclassified	root	N/A	16.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.49 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.64 %
Unclassified	root	N/A	16.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.94 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.64 %
Unclassified	root	N/A	16.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %
unclassified Nitriliruptorales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales	0.94 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.64 %
Unclassified	root	N/A	16.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Nitriliruptorales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090008\|P3_DRAFT_NODE_110834_len_866_cov_8_497690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	916	Open in IMG/M
3300000878\|AL9A1W_1353111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	661	Open in IMG/M
3300000956\|JGI10216J12902_100112320	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300001359\|A3035W6_1055027	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300003203\|JGI25406J46586_10076792	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300003312\|P12013IDBA_1014938	All Organisms → cellular organisms → Bacteria	3310	Open in IMG/M
3300003319\|soilL2_10043061	All Organisms → cellular organisms → Bacteria	2595	Open in IMG/M
3300003321\|soilH1_10000933	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300004081\|Ga0063454_101985915	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300004479\|Ga0062595_100093481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1571	Open in IMG/M
3300004479\|Ga0062595_100237075	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300005166\|Ga0066674_10071879	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300005332\|Ga0066388_106631813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300005336\|Ga0070680_101387451	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005406\|Ga0070703_10599085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	508	Open in IMG/M
3300005434\|Ga0070709_10965923	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300005445\|Ga0070708_100083762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2892	Open in IMG/M
3300005445\|Ga0070708_100136841	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300005445\|Ga0070708_101405498	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005451\|Ga0066681_10984604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300005459\|Ga0068867_100559088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	992	Open in IMG/M
3300005468\|Ga0070707_101922915	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005471\|Ga0070698_100943517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300005530\|Ga0070679_100636659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1009	Open in IMG/M
3300005540\|Ga0066697_10413224	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005566\|Ga0066693_10007166	All Organisms → cellular organisms → Bacteria → Proteobacteria	3005	Open in IMG/M
3300005577\|Ga0068857_100491083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1151	Open in IMG/M
3300005587\|Ga0066654_10375489	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005618\|Ga0068864_102253029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	551	Open in IMG/M
3300005764\|Ga0066903_100106131	All Organisms → cellular organisms → Bacteria	3823	Open in IMG/M
3300005764\|Ga0066903_105693839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	655	Open in IMG/M
3300005764\|Ga0066903_107470656	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005764\|Ga0066903_107679491	Not Available	555	Open in IMG/M
3300005985\|Ga0081539_10442137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300006046\|Ga0066652_100539244	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300006046\|Ga0066652_101164439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	730	Open in IMG/M
3300006796\|Ga0066665_11315721	Not Available	555	Open in IMG/M
3300006806\|Ga0079220_10606599	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300006954\|Ga0079219_10544676	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300006954\|Ga0079219_10837808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	731	Open in IMG/M
3300009137\|Ga0066709_100091067	All Organisms → cellular organisms → Bacteria	3691	Open in IMG/M
3300009162\|Ga0075423_11891427	Not Available	645	Open in IMG/M
3300009789\|Ga0126307_10606833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	883	Open in IMG/M
3300009789\|Ga0126307_11344983	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300010038\|Ga0126315_10329856	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300010039\|Ga0126309_10453641	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300010041\|Ga0126312_10647493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	761	Open in IMG/M
3300010044\|Ga0126310_10807150	Not Available	722	Open in IMG/M
3300010045\|Ga0126311_10596041	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300010133\|Ga0127459_1077127	Not Available	522	Open in IMG/M
3300011998\|Ga0120114_1007269	All Organisms → cellular organisms → Bacteria	2652	Open in IMG/M
3300012019\|Ga0120139_1007419	All Organisms → cellular organisms → Bacteria	2592	Open in IMG/M
3300012093\|Ga0136632_10409994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300012186\|Ga0136620_10086690	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300012204\|Ga0137374_10310508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1289	Open in IMG/M
3300012212\|Ga0150985_122319032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300012393\|Ga0134052_1286989	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300012402\|Ga0134059_1357629	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300012410\|Ga0134060_1360168	Not Available	662	Open in IMG/M
3300012469\|Ga0150984_110611083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	711	Open in IMG/M
3300012469\|Ga0150984_115380775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300012469\|Ga0150984_115989216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	591	Open in IMG/M
3300012469\|Ga0150984_121992245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300012529\|Ga0136630_1086025	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300012681\|Ga0136613_10164737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1261	Open in IMG/M
3300012682\|Ga0136611_10007848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7509	Open in IMG/M
3300013503\|Ga0120127_10076137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	716	Open in IMG/M
3300014325\|Ga0163163_12391914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	587	Open in IMG/M
3300014968\|Ga0157379_11900986	Not Available	586	Open in IMG/M
3300015164\|Ga0167652_1033644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1006	Open in IMG/M
3300015371\|Ga0132258_13401553	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300017787\|Ga0183260_10062456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2744	Open in IMG/M
3300017787\|Ga0183260_10551150	Not Available	745	Open in IMG/M
3300017789\|Ga0136617_10067322	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3138	Open in IMG/M
3300018071\|Ga0184618_10002877	All Organisms → cellular organisms → Bacteria	4496	Open in IMG/M
3300018431\|Ga0066655_10441897	Not Available	859	Open in IMG/M
3300018482\|Ga0066669_10318918	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300020002\|Ga0193730_1014113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2282	Open in IMG/M
3300020010\|Ga0193749_1013081	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300020022\|Ga0193733_1034922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1420	Open in IMG/M
3300021080\|Ga0210382_10060012	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300021363\|Ga0193699_10034517	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300021445\|Ga0182009_10679655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556	Open in IMG/M
3300025912\|Ga0207707_11068211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	659	Open in IMG/M
3300025917\|Ga0207660_11348313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
3300025918\|Ga0207662_11296356	Not Available	517	Open in IMG/M
3300025922\|Ga0207646_10007005	All Organisms → cellular organisms → Bacteria	11548	Open in IMG/M
3300025922\|Ga0207646_11180993	Not Available	671	Open in IMG/M
3300026327\|Ga0209266_1234200	Not Available	607	Open in IMG/M
3300026540\|Ga0209376_1260583	Not Available	733	Open in IMG/M
3300028784\|Ga0307282_10028920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2381	Open in IMG/M
3300028784\|Ga0307282_10035557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2173	Open in IMG/M
3300028784\|Ga0307282_10038477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2100	Open in IMG/M
3300028784\|Ga0307282_10061786	Not Available	1689	Open in IMG/M
3300028784\|Ga0307282_10256611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	840	Open in IMG/M
3300028793\|Ga0307299_10416165	Not Available	504	Open in IMG/M
3300028799\|Ga0307284_10240111	Not Available	719	Open in IMG/M
3300028828\|Ga0307312_10020291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3775	Open in IMG/M
3300031198\|Ga0307500_10139062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	685	Open in IMG/M
3300031226\|Ga0307497_10582355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
3300031548\|Ga0307408_100171052	All Organisms → cellular organisms → Bacteria → Proteobacteria	1735	Open in IMG/M
3300031820\|Ga0307473_11371686	Not Available	532	Open in IMG/M
3300031938\|Ga0308175_103037945	Not Available	522	Open in IMG/M
3300031939\|Ga0308174_11907071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	511	Open in IMG/M
3300032074\|Ga0308173_10339452	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300034178\|Ga0364934_0027774	All Organisms → cellular organisms → Bacteria	2066	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.85%
Host-Associated	Host-Associated	14.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.42%
Plants	Host-Associated → Plants	14.15%
Aquatic	Environmental → Aquatic	9.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.47%
Freshwater	Environmental → Aquatic → Freshwater	8.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.60%
Sediment	Environmental → Aquatic → Sediment	0.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.60%
Loam	Environmental → Terrestrial → Soil → Loam	18.87%
Ice	Environmental → Aquatic → Freshwater → Ice	7.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.21%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.49%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.55%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001359	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illumina	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_DRAFT_01059850	2088090008	Soil	MEIVHRPSGGFAMELTLRTLCLLIAVILFVVYAVGVDVKGISFLGLGLAFFAGSFVVPATRLNR
AL9A1W_13531111	3300000878	Permafrost	MRLTFRSLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGSFLVPE
JGI10216J12902_1001123202	3300000956	Soil	MTLTLRTLLLLIAVILFVVAAVGVDVKGVSLTALGLACFAGAFLVPNSALGRRT*
A3035W6_10550272	3300001359	Permafrost	MRLTFRSLCLLIAVILFVIAALGVDVGGISPVALGLAFFAGSFLVPETSLGRR*
JGI25406J46586_100767922	3300003203	Tabebuia Heterophylla Rhizosphere	MTLTFRTLLLLIAVILFVVVAIGVDVRGVSLAWLGMALFAASFIVPDRVLSSRP*
P12013IDBA_10149383	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MTLTFRTLLLLIAVILFVIAAFGVDLGGVSLVALGLAAFAAAFLVPDTVVGTRR*
soilL2_100430613	3300003319	Sugarcane Root And Bulk Soil	MQLTIRSVLILIAVILFVIAAIGVDVRGLSLTALGLAFFAGAFLVPDTVISRRP*
soilH1_100009332	3300003321	Sugarcane Root And Bulk Soil	MTLTIRTLLLLIAVILFVVAAFGVDVRGISLVALGLALFAASFIVPDTVIGNRR*
Ga0063454_1019859151	3300004081	Soil	PMTLTIRTLCLLIALILFVVAAIGVDVKGISLAWLGMAFFAASFLLPDTLLGTRR*
Ga0062595_1000934814	3300004479	Soil	MQLTFRTLCLLIAVILFVITAFGVDVRGISLVALGLAFFAGSYLVPETGLSRRR*
Ga0062595_1002370752	3300004479	Soil	MQLTIRSLLLIIAVILFLVAAFGVDVRGISLVALGLALFAAAFIVPDTIVGRR*
Ga0066674_100718792	3300005166	Soil	MRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0066388_1066318132	3300005332	Tropical Forest Soil	MRLTARTICLIIAVVLFVAAALGFDVRNISLTTVGLAFFAAAFLVPKTVLGRRP*
Ga0070680_1013874512	3300005336	Corn Rhizosphere	LTFRTLCLLIAVILFVLAALGVNVRDISLTALGLAFFAGSFLVPETNISRR*
Ga0070703_105990851	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTLRTLCLLIAVILFVVDAVGVDLKGISVLALGFAFFAGSFLVPDTKLSR*
Ga0070709_109659231	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTFRTLCLLIAVILFVIATLGVDVRGISLVALGLAFFAGSFLVPETSISRRP*
Ga0070708_1000837622	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTVRTLSLIIAVILFVLAAVGIDVRGISLVALGLAFFAASFVVPDRLVSRR*
Ga0070708_1001368412	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTVRSLCLLIAVILFVLYALSVDVKGISFLGLGLAFFAGSFLVPATRLNR*
Ga0070708_1014054981	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSYLVPETGLSRRR*
Ga0066681_109846041	3300005451	Soil	MQLTTRTICLLIAVILFIAAAIGVDFRGTSLGAAGLAFFAASFLVPDRMLSRR*
Ga0068867_1005590882	3300005459	Miscanthus Rhizosphere	MQLTARTLCILLAVVLFVLAGVGIGFSGISLAWLGMALFAGSFVVPDTAISR*
Ga0070707_1019229151	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTLRSLCLLIAVILFVLYAVNVDVKGVSFLGLGLAFFAGSFVAPETKLNR*
Ga0070698_1009435172	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTFRTLCLLIAVILLVIAALGVDVRGISLVALGLAFFAGSFLVPETVLSRRR*
Ga0070679_1006366592	3300005530	Corn Rhizosphere	MQLTFRTLCLLIAVILFVLAALGVNVRDISLTALGLAFFAGSFLVPETNISRR*
Ga0066697_104132241	3300005540	Soil	RAITTGGEHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0066693_100071663	3300005566	Soil	MQLTTRTICLLIAVILFIAAAIGVDFRGISLGAAGLAFFAASFLVPDRMLSRR*
Ga0068857_1004910833	3300005577	Corn Rhizosphere	MQLTFRTLCLLIAVILFAVDAFGVDVKGISLTALGLAFFAGSFLVPDRVLSRRP*
Ga0066654_103754892	3300005587	Soil	MTLTLRSLLLLIAVIIFVIAALGVHVGDVSLVALGLAFFAGAFLVPETALGQRR*
Ga0068864_1022530292	3300005618	Switchgrass Rhizosphere	VQLTVRTLCLLVAVILFVLAAVSVDVKGISLAWLGMAFFAGSFLVPDTLISRR*
Ga0066903_1001061313	3300005764	Tropical Forest Soil	VQFTIRSILLIIAVILFVIAAFGVDVRGISLVALGLAFVAAAFLVPDSVLGMRRP*
Ga0066903_1056938392	3300005764	Tropical Forest Soil	MRLTFRTMLLIVAVVIFLIAAFGVDVRGLALIPLGLAFVAAAFLVPESPFRLRR*
Ga0066903_1074706562	3300005764	Tropical Forest Soil	MSFSLRMLLLLIALILFVIAAFGVHVGDVSLVALGLAFVAGAFLVPEGLLGRRA*
Ga0066903_1076794911	3300005764	Tropical Forest Soil	MSLTLRTILLLVAVVIFVIAAFGYDVRGVSLVPLGLAFVAAAFLLPEIGLRRRV*
Ga0081539_104421371	3300005985	Tabebuia Heterophylla Rhizosphere	MSLTFRTLLLLIAVVLFVLAAIDVSVKGLSLAWLGMALFAASFLVPDTII
Ga0066652_1005392442	3300006046	Soil	MQLTIRSLLLIIAVILFVVAAFGIDVRGISLVALGLAFFAASFIVPDSFVGRRP*
Ga0066652_1011644392	3300006046	Soil	MQLTLRTILLIVAVVLFLVAAFGVDVRGLSLIPLGLAFVAAAFLVPDTVLGTRRP*
Ga0066665_113157211	3300006796	Soil	RVDHRAITTGGEHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0079220_106065992	3300006806	Agricultural Soil	MQLTIRSLLLIIAVVLFLVAAFGVDVRGISLVALGLALFAAAFIVP
Ga0079219_105446762	3300006954	Agricultural Soil	MQLTIRSLLLIIAVVLFLVAAFGVDVRGISLVALGLALFAAAFIVPDTIVGRRP*
Ga0079219_108378081	3300006954	Agricultural Soil	MTFSLRMLLLLVALILFVIAAFGVRVGDVSLVALGLAFVAGAFLVPETLLGRRA*
Ga0066709_1000910674	3300009137	Grasslands Soil	VDHRAITTGGEHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0075423_118914272	3300009162	Populus Rhizosphere	MQLTVRTLCLIIAVILFVLAAFGIDVRGISLVALGLAFFAASFFVPDRLVGRR*
Ga0126307_106068331	3300009789	Serpentine Soil	MQLTVRTLCLLIAVILFVIAAVGVDVRGISLVALGLAFFAAAFLVPDTILSRRP*
Ga0126307_113449832	3300009789	Serpentine Soil	MQLTVRTLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGAFLVPDTVLGRRA*
Ga0126315_103298562	3300010038	Serpentine Soil	MQLTVRTLCLLIAVILFVVAAFGADVRGISFEALGLAFFAAAFLVPDTVLGRRA*
Ga0126309_104536412	3300010039	Serpentine Soil	MQLTVRTLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGAFLVPDTVLG
Ga0126312_106474931	3300010041	Serpentine Soil	MQLTVRTLCLLIAVILFVVAAFGADVRGISFEALGLAFFAAAFLVPDSLLSRRP*
Ga0126310_108071502	3300010044	Serpentine Soil	MQLTIRTLFLLIAVILFIVAALGVNVRDISLTALGLALFAASFLVPDRLLTRRP*
Ga0126311_105960412	3300010045	Serpentine Soil	IALILFIVAAIGVDVRGISLVALGLAFMAGAFLVPDTVLGTRR*
Ga0127459_10771271	3300010133	Grasslands Soil	GVDHRAITTGGEHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0120114_10072693	3300011998	Permafrost	MRLTFRSLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGSFLVPETSLGRR*
Ga0120139_10074193	3300012019	Permafrost	MRLTFRSLCLLIAVILFVIAAFGVDVRGISLVALGLAFLAGSFLVPETSLGRR*
Ga0136632_104099942	3300012093	Polar Desert Sand	MTLTFRTLLLLVAVILFVLAAIGIDLGDISVVALGLACFAAAFLVPDTALGTRR*
Ga0136620_100866903	3300012186	Polar Desert Sand	MTLTFRTLLLLIAVILFVLAAIGIDLGDISLVALGLACFAAAFLVPDTALGTRR*
Ga0137374_103105082	3300012204	Vadose Zone Soil	MTLTFRTLLLVLAVILFVVDAVGSVSGVSLNNLGLACFAGSFLAPDRVIQRR*
Ga0150985_1223190321	3300012212	Avena Fatua Rhizosphere	MTLTLRTLLLLIAVIIFVIAALGVHVGDVSLVALGLAFFAGAFLDLETALGPRR*
Ga0134052_12869891	3300012393	Grasslands Soil	HMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0134059_13576292	3300012402	Grasslands Soil	IAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0134060_13601681	3300012410	Grasslands Soil	EHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR*
Ga0150984_1106110831	3300012469	Avena Fatua Rhizosphere	EVVMQLTIRTVLLLIAVILFIVAALGVDVRGFSLAWAGMAFFAASFLVPDTVLGTRR*
Ga0150984_1153807752	3300012469	Avena Fatua Rhizosphere	MQLTIRSLLLLIAVILFVAYAVGVRTGDLSLLGLGLAFFAGSFLVPDTVLGTRRR*
Ga0150984_1159892161	3300012469	Avena Fatua Rhizosphere	HMRLTIRSLLLIIAVILFVIAAIGVDVRGISLIALGLAFFAAAFVVPENALGTRP*
Ga0150984_1219922451	3300012469	Avena Fatua Rhizosphere	VVMQLTIRTVLLLIAVILFIVAALGVDVRGFSLAWAGMAFFAASFLVPDTVLGTRR*
Ga0136630_10860252	3300012529	Polar Desert Sand	MSLTFRSVLLLIAVVLFVLAAFGVDVGDVSVVALGLACFAGSFLVPETAIGNRR*
Ga0136613_101647372	3300012681	Polar Desert Sand	MSLTFRSVLLLIAVVLFVLAAFGVDVGNVSVVALGLACFAGSFLVPETAIGNRR*
Ga0136611_100078481	3300012682	Polar Desert Sand	MTLTFRTLLLLVAVILFVLAAIGIDLGDISVVAIGLACFAAAFLVPDTALGTRR*
Ga0120127_100761372	3300013503	Permafrost	MRLTFRSLCLLIAVILFVIAAFGVDVRGISLVALGLAFLAGSFLVPETALGRR*
Ga0163163_123919142	3300014325	Switchgrass Rhizosphere	MQLTARTLCLLVAVILFLIAALGVDVRGIGLQSLGLAFFAAAFLVPDSLISRRP*
Ga0157379_119009862	3300014968	Switchgrass Rhizosphere	MQLTLRTLCLLIAVILFVVDAVGVDLKGISVLALGFAFFAGSFLVPD
Ga0167652_10336442	3300015164	Glacier Forefield Soil	MQLTFRTLCLLIAVILFVISALGVDVRGISLVSLGLAFFAGSFLVPDTILARR*
Ga0132258_134015532	3300015371	Arabidopsis Rhizosphere	MTLTIRMLLLLIAVIIFVIAAFGVKVGDVSLVALGLAFFAGAFLVPETALGARR*
Ga0183260_100624562	3300017787	Polar Desert Sand	MSLTFRSVLLLIAVVLFVLAAFGVEVGDVSVVALGLACFAGSFLVPETAIGNRR
Ga0183260_105511501	3300017787	Polar Desert Sand	MSLTFRSVLLLIAVVLFVLAAFGVDVGNVSVVALGLACFAGSFLVPETAIGSRR
Ga0136617_100673222	3300017789	Polar Desert Sand	MSLTFRSVLLLIAVVLFVLAAFGVDVGDVSVVALGLACFAGSFLVPETAIGNRR
Ga0184618_100028775	3300018071	Groundwater Sediment	MQLTVRTLCLLIAVILFVLAAVGVDVRGVSLVALGLAFFAASFFVPDTIVGRRR
Ga0066655_104418971	3300018431	Grasslands Soil	MQLTIRTLLLLIAVTLFVVYALGVRTGDISLLGLGLAFFAGAFVVPDTMVGRR
Ga0066669_103189183	3300018482	Grasslands Soil	MQLTTRTICLLIAVILFIAAAIGVDFRGISLGAAGLAFFAASFLVPDRMLSRR
Ga0193730_10141135	3300020002	Soil	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSFLVPETVLSRRR
Ga0193749_10130813	3300020010	Soil	MQLTFRTLCLLIAVILFVMATLGVDVRGISLVALGLAFFAGSFLVPETVISRRP
Ga0193733_10349222	3300020022	Soil	MQLTLRTLCLLIAVILFIVAALGVDVRGISLVTLGLAFFAGSFLVPETSISRRR
Ga0210382_100600122	3300021080	Groundwater Sediment	MQLTFRTLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGSFLVPETRLSRRP
Ga0193699_100345171	3300021363	Soil	MQLTFRTLCLLIAVILFVLGALGVNVRDISLTALGLAFFAGSFLVPETSISRR
Ga0182009_106796551	3300021445	Soil	MAAMQLTIRTLLLLIAVILLLVAAFGVDVRGISLGWLGLAFFAASFLVPDTVLGTRR
Ga0207707_110682112	3300025912	Corn Rhizosphere	MQLTFRTLCLLIAVILFVLAALGVNVRDISLTALGLAFFAGSFLVPETNISRR
Ga0207660_113483132	3300025917	Corn Rhizosphere	ILFVLAALGVNVRDISLTALGLAFFAGSFLVPETNISRR
Ga0207662_112963561	3300025918	Switchgrass Rhizosphere	MQLTLRTLCLLIAVILFVVDAVGVDLKGISVLALGFAFFAGSFLVPDTKLSR
Ga0207646_100070058	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTVRTLSLIIAVILFVLAAVGIDVRGISLVALGLAFFAASFVVPDRLVSRR
Ga0207646_111809932	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSYLVPETGLSRRR
Ga0209266_12342001	3300026327	Soil	MRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR
Ga0209376_12605831	3300026540	Soil	ITTGGEHMRLTVRSLCLIIAVILFVLAAIGIDVRGISLVALGLAFFAASFFVPDTLVGRR
Ga0307282_100289202	3300028784	Soil	MQLTLRTLCLLVAVILFVIDAIGVDVKGISLLALGLAFFAGSFLVPDRSLRR
Ga0307282_100355571	3300028784	Soil	LLIAVILFVLAALGVNVRDISLTALGLAFFAGSFLVPETRISRR
Ga0307282_100384772	3300028784	Soil	MQLTFRTLCLLIAVILFVVAALGVDVRGISLVALGLAFFAGSFLVPERSLSRRR
Ga0307282_100617861	3300028784	Soil	MQLTFRTLCLLIAVILFVLAALGVNVRDISLTALGLAFFAGSFLVPETSISRR
Ga0307282_102566112	3300028784	Soil	MQLTIRTLFLLIALILFVLAALSVDVKGISLVDVGLAFFAGSFLVPDRALTSR
Ga0307299_104161651	3300028793	Soil	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSFFVPE
Ga0307284_102401111	3300028799	Soil	ILFVLAALGVNVRDISLTALGLAFFAGSFLVPETSISRR
Ga0307312_100202914	3300028828	Soil	MQLTFRTLCLLIAVILFVIAAFGVDVRGISLVALGLAFFAGSFFVPETVLSRRR
Ga0307500_101390622	3300031198	Soil	LVAVIVFLVATFGVVDLKGISLVALGLAFFAGAFLVPDTILGTRRP
Ga0307497_105823552	3300031226	Soil	MQLTIRTLCLLVAVILFLVATFGVVDLKGISLVALGLAFFAAAFLVPDTILGARRS
Ga0307408_1001710522	3300031548	Rhizosphere	MQLTVRTLCLLIAVILFVIAALGVDVRGISLVALGLAFFAGAFLVPDTVLGRRA
Ga0307473_113716861	3300031820	Hardwood Forest Soil	MQLTVRTLSLIIAMILFVLAAVGIDVRGISLVALGLAFFAASFVVPDRLVSRR
Ga0308175_1030379451	3300031938	Soil	SSGASMTLTVRTLLLLIAVIVFVLAAVGLDLGDVNVVALGLALFAAAFLVPDTAFGTRR
Ga0308174_119070712	3300031939	Soil	GGCGHSGMEDRMTLTLRTLLLLIAVIIFVIAALGVHVGDVSLVALGLAFFAAAFLVPDTALGRRP
Ga0308173_103394522	3300032074	Soil	MTLTLRTLLLLIAVIIFVIAALGVHVGDVSLVALGLAFFAAAFLVPDTALGRRP
Ga0364934_0027774_659_823	3300034178	Sediment	MALTVRSLLLLAAVILFVLAAVGIDVSGISLVALGLACFAGSFVAPDRALGGRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094586

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences