Metagenome / Metatranscriptome Family F094565

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094565
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	RADPQQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEQLDPRSR
Number of Associated Samples	86
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.73 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.377 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (28.302 % of family members)
Environment Ontology (ENVO)	Unclassified (37.736 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.604 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.78% β-sheet: 19.48% Coil/Unstructured: 59.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF12681	Glyoxalase_2	2.83
PF09996	DUF2237	2.83
PF04237	YjbR	1.89
PF00085	Thioredoxin	1.89
PF07081	DUF1349	1.89
PF07883	Cupin_2	1.89
PF13649	Methyltransf_25	1.89
PF08448	PAS_4	1.89
PF00583	Acetyltransf_1	1.89
PF00343	Phosphorylase	1.89
PF03618	Kinase-PPPase	0.94
PF01433	Peptidase_M1	0.94
PF00484	Pro_CA	0.94
PF05067	Mn_catalase	0.94
PF04828	GFA	0.94
PF06745	ATPase	0.94
PF13631	Cytochrom_B_N_2	0.94
PF01566	Nramp	0.94
PF12728	HTH_17	0.94
PF01361	Tautomerase	0.94
PF13177	DNA_pol3_delta2	0.94
PF00892	EamA	0.94
PF04542	Sigma70_r2	0.94
PF00383	dCMP_cyt_deam_1	0.94
PF07498	Rho_N	0.94
PF03364	Polyketide_cyc	0.94
PF05239	PRC	0.94
PF00106	adh_short	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	1.89
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	1.89
COG3506	Regulation of enolase protein 1 (function unknown), concanavalin A-like superfamily	Function unknown [S]	1.89
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.94
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG1806	Regulator of PEP synthase PpsR, kinase-PPPase family (combines ADP:protein kinase and phosphorylase activities)	Signal transduction mechanisms [T]	0.94
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.94
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG3546	Mn-containing catalase (includes spore coat protein CotJC)	Inorganic ion transport and metabolism [P]	0.94
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.17 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.23 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.58 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.77 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.94 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	20.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.89 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.89 %
Euzebyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales	0.94 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.94 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.75 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.89 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.89 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.94 %
unclassified Euzebyales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales	0.94 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.75 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.89 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.89 %
Sphaerimonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora	0.94 %
Euzebyales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	0.94 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.75 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.89 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.94 %
Sphaerimonospora thailandensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	0.94 %
Euzebyales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	0.94 %
Actinobacteria bacterium 13_2_20CM_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	0.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_10053726	Not Available	657	Open in IMG/M
3300000890\|JGI11643J12802_10384517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300000956\|JGI10216J12902_114159002	Not Available	773	Open in IMG/M
3300001431\|F14TB_100055141	Not Available	510	Open in IMG/M
3300002568\|C688J35102_119847118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300004463\|Ga0063356_105663994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300004479\|Ga0062595_101250388	Not Available	664	Open in IMG/M
3300004643\|Ga0062591_101372172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300005338\|Ga0068868_101912777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	562	Open in IMG/M
3300005338\|Ga0068868_102186586	Not Available	527	Open in IMG/M
3300005354\|Ga0070675_100326100	Not Available	1357	Open in IMG/M
3300005438\|Ga0070701_11026502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300005441\|Ga0070700_100591802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	868	Open in IMG/M
3300005441\|Ga0070700_100835193	Not Available	745	Open in IMG/M
3300005459\|Ga0068867_102276935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	515	Open in IMG/M
3300005526\|Ga0073909_10369665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300005546\|Ga0070696_101564982	Not Available	566	Open in IMG/M
3300005578\|Ga0068854_101386804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300005587\|Ga0066654_10048446	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300005841\|Ga0068863_101655424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	649	Open in IMG/M
3300006806\|Ga0079220_10612054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300006845\|Ga0075421_100477121	Not Available	1485	Open in IMG/M
3300006852\|Ga0075433_11043606	Not Available	711	Open in IMG/M
3300006918\|Ga0079216_11735386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300007004\|Ga0079218_11215995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300009100\|Ga0075418_11150927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840	Open in IMG/M
3300009156\|Ga0111538_12886953	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300009156\|Ga0111538_13151605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	575	Open in IMG/M
3300009553\|Ga0105249_12189067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300009553\|Ga0105249_13480298	Not Available	507	Open in IMG/M
3300009840\|Ga0126313_11129706	Not Available	644	Open in IMG/M
3300009840\|Ga0126313_11545150	Not Available	552	Open in IMG/M
3300010036\|Ga0126305_11270942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300010040\|Ga0126308_10415403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	899	Open in IMG/M
3300010041\|Ga0126312_11464576	Not Available	506	Open in IMG/M
3300010045\|Ga0126311_11190874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300010373\|Ga0134128_12221049	Not Available	604	Open in IMG/M
3300010375\|Ga0105239_10440725	Not Available	1477	Open in IMG/M
3300010400\|Ga0134122_10864511	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300010400\|Ga0134122_11538517	Not Available	686	Open in IMG/M
3300011107\|Ga0151490_1221633	Not Available	568	Open in IMG/M
3300011119\|Ga0105246_11453735	Not Available	642	Open in IMG/M
3300012092\|Ga0136621_1146107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300012185\|Ga0136619_10042247	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300012185\|Ga0136619_10103289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300012186\|Ga0136620_10386249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300012187\|Ga0136622_10416388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300012355\|Ga0137369_10706652	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300012678\|Ga0136615_10180094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	977	Open in IMG/M
3300012684\|Ga0136614_10174569	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300012684\|Ga0136614_10231201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1386	Open in IMG/M
3300012684\|Ga0136614_10232776	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300012892\|Ga0157294_10137373	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300012907\|Ga0157283_10382519	Not Available	517	Open in IMG/M
3300012988\|Ga0164306_10780017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300015200\|Ga0173480_11209240	Not Available	511	Open in IMG/M
3300015371\|Ga0132258_11289072	Not Available	1846	Open in IMG/M
3300015372\|Ga0132256_103272312	Not Available	545	Open in IMG/M
3300018028\|Ga0184608_10065312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1464	Open in IMG/M
3300018051\|Ga0184620_10086592	Not Available	947	Open in IMG/M
3300018072\|Ga0184635_10083485	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300018073\|Ga0184624_10322004	Not Available	692	Open in IMG/M
3300018432\|Ga0190275_11636997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300018466\|Ga0190268_12075521	Not Available	526	Open in IMG/M
3300018481\|Ga0190271_11725850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	739	Open in IMG/M
3300020005\|Ga0193697_1040308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1167	Open in IMG/M
3300022756\|Ga0222622_10369415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300022756\|Ga0222622_10923825	Not Available	640	Open in IMG/M
3300022756\|Ga0222622_11035181	Not Available	603	Open in IMG/M
3300025917\|Ga0207660_11680788	Not Available	511	Open in IMG/M
3300025937\|Ga0207669_11089833	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300025940\|Ga0207691_10814430	Not Available	784	Open in IMG/M
3300025944\|Ga0207661_12149870	All Organisms → cellular organisms → Bacteria → Terrabacteria group	504	Open in IMG/M
3300025981\|Ga0207640_11422772	Not Available	622	Open in IMG/M
3300026067\|Ga0207678_11759019	Not Available	543	Open in IMG/M
3300028381\|Ga0268264_10344160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1417	Open in IMG/M
3300028709\|Ga0307279_10029882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	804	Open in IMG/M
3300028720\|Ga0307317_10231432	Not Available	624	Open in IMG/M
3300028755\|Ga0307316_10119225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	929	Open in IMG/M
3300028771\|Ga0307320_10007602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3867	Open in IMG/M
3300028771\|Ga0307320_10236647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_68_14	718	Open in IMG/M
3300028771\|Ga0307320_10281439	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300028784\|Ga0307282_10036481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2148	Open in IMG/M
3300028787\|Ga0307323_10212271	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300028796\|Ga0307287_10001170	All Organisms → cellular organisms → Bacteria	8866	Open in IMG/M
3300028796\|Ga0307287_10075051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1263	Open in IMG/M
3300028799\|Ga0307284_10299270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerimonospora → Sphaerimonospora thailandensis	646	Open in IMG/M
3300028807\|Ga0307305_10447528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300028810\|Ga0307294_10145358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	786	Open in IMG/M
3300028811\|Ga0307292_10393788	Not Available	588	Open in IMG/M
3300028814\|Ga0307302_10347367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300028819\|Ga0307296_10497449	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300028824\|Ga0307310_10017392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2794	Open in IMG/M
3300028824\|Ga0307310_10486389	Not Available	621	Open in IMG/M
3300028824\|Ga0307310_10747282	Not Available	503	Open in IMG/M
3300028876\|Ga0307286_10255305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300028881\|Ga0307277_10016127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2904	Open in IMG/M
3300028881\|Ga0307277_10372610	Not Available	637	Open in IMG/M
3300028889\|Ga0247827_11312590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300031908\|Ga0310900_11511195	Not Available	566	Open in IMG/M
3300031938\|Ga0308175_100202922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1954	Open in IMG/M
3300031938\|Ga0308175_101275009	Not Available	818	Open in IMG/M
3300031996\|Ga0308176_11394657	Not Available	745	Open in IMG/M
3300033550\|Ga0247829_10525431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.30%
Host-Associated	Host-Associated	21.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.32%
Plants	Host-Associated → Plants	21.70%
Aquatic	Environmental → Aquatic	16.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.21%
Freshwater	Environmental → Aquatic → Freshwater	10.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Sediment	Environmental → Aquatic → Sediment	6.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.77%
Ice	Environmental → Aquatic → Freshwater → Ice	10.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.62%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	10.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	28.30%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	10.38%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012185	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_100537261	3300000890	Soil	RADPQQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEQLDPRSR*
JGI11643J12802_103845172	3300000890	Soil	RADPQQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVERLDPRSR*
JGI10216J12902_1141590022	3300000956	Soil	AEYENVRADATQFVVLPQHFTPEVETLASEHKAYWIVRKTGDAGEYVEKLDPRSRT*
F14TB_1000551411	3300001431	Soil	LPLSVYENIRADPRQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEHLDPRSR*
C688J35102_1198471182	3300002568	Soil	DPRQFVVLPLHFTPEVETLVAKNEGHWLVRKIGEAGEYVEKLDPRSR*
Ga0063356_1056639941	3300004463	Arabidopsis Thaliana Rhizosphere	FVVLPQHFTPEVETLAAENTAYWIVRKTGDAGEYVEKLDPRSRH*
Ga0062595_1012503881	3300004479	Soil	PLSAYESIRADPRQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEHLDPRSR*
Ga0062591_1013721721	3300004643	Soil	AVYERIRSDPKQFVVLPDHYTPEIEDLVVEEDSYWVVRKSGDAGDYVEHLDPRGR*
Ga0068868_1019127771	3300005338	Miscanthus Rhizosphere	PTQFLVLPVHFTPEIEEVVAKHEAYWIVRKTGEAAEYVSHLDPRSR*
Ga0068868_1021865862	3300005338	Miscanthus Rhizosphere	IRSDPKQFVVLPDHYTPEIEDVVSKTDSHWIVRKSGDAGDYVEHLDPRSR*
Ga0070675_1003261003	3300005354	Miscanthus Rhizosphere	VLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER*
Ga0070701_110265021	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	EYGAVRADPRQFVVLPLHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR*
Ga0070700_1005918021	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	IRSDPKQFVVLPDHYTPEIEDVISKTDSHWIVRKSGDAGDYVEHLDPRSR*
Ga0070700_1008351931	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DCTYRVVLPLAVYESIRSDPKQFVVLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER*
Ga0068867_1022769351	3300005459	Miscanthus Rhizosphere	CTYRVVLPLAVYESIRSDPKQFVVLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER*
Ga0073909_103696651	3300005526	Surface Soil	LVLPLHYTPEIETLVAEHERYWVVRKTGDAGDYVEHLDPRSR*
Ga0070696_1015649822	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RSDPKQFVVLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER*
Ga0068854_1013868042	3300005578	Corn Rhizosphere	RISLTHAAYDAVRADPRQFVVLPLHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR*
Ga0066654_100484461	3300005587	Soil	HFTPEVETLVTTNEGHWLVRKTGEAGDYVEKLDPRSR*
Ga0068863_1016554241	3300005841	Switchgrass Rhizosphere	GSTAEYFCECANPDCTFRISLTHTEYGAVRADPRQFVVLPLHFTPEVETLVTKTEGYWLVRKTGEAGEYVEKLDPRSR*
Ga0079220_106120542	3300006806	Agricultural Soil	FRISLAHAEYGAVRADPRQFVVLPLHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR*
Ga0075421_1004771211	3300006845	Populus Rhizosphere	ADPQQFVVLPLHYTPEVEDLVIEEDTHWIVRKTGEAGEYVEHLDPRSR*
Ga0075433_110436061	3300006852	Populus Rhizosphere	PQQFVVLPLHYTPEVEDLVIEADTHWVVRKTGEAGEYVEHLDPRSR*
Ga0079216_117353861	3300006918	Agricultural Soil	EVEDLVSESESHWIVRKFGEAGEYVTRLDPRSRGASSDSA*
Ga0079218_112159951	3300007004	Agricultural Soil	DPRQFVVLPDHYTPEVEDLVVQEETHWVVVKTGDAGEYVEHLDPRSR*
Ga0075418_111509272	3300009100	Populus Rhizosphere	CECANVDCTFPLTLPLPVYEQVRGDSRQFVVLPLHYTPEVEELVAEEEGYWIVRKTGESGEYVEQLDPRGGN*
Ga0111538_128869531	3300009156	Populus Rhizosphere	RISLALSAYESIRADPRQFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEHLDPRSR*
Ga0111538_131516053	3300009156	Populus Rhizosphere	VLPDHYTPEVEDLVAREDTYWVVRKVGEAGEYVERLDPRGR*
Ga0105249_121890671	3300009553	Switchgrass Rhizosphere	LPLPIYESVRAHSTQCVELPLHYTPEVEDLVVEEDDYWIVRKTGEAGEFVDRIDPRSR*
Ga0105249_134802982	3300009553	Switchgrass Rhizosphere	LHYTPEVEDLVIEEDTHWIVRKTGEAGEYVEHLDPRSR*
Ga0126313_111297061	3300009840	Serpentine Soil	SEIETLVSENEGHWLVQKTGEAGEYVDRLDPPSR*
Ga0126313_115451501	3300009840	Serpentine Soil	SVYESIRADPQRFVVLPLHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEHLDPRSR*
Ga0126305_112709421	3300010036	Serpentine Soil	MIELTRAEYESLRADGTQFVVRPLHYTPEIETLVVEHESYWIVRKTGEAGDLASSLDPRADA*
Ga0126308_104154032	3300010040	Serpentine Soil	VRADTRQFVVLPLHYTPEIEELVVEAETYWVVRKTGEAGEYVDQLDPRSG*
Ga0126312_114645761	3300010041	Serpentine Soil	LHFTSEIETLVSKNERHWLVRKTGEAGEYVDRLDPPSR*
Ga0126311_111908741	3300010045	Serpentine Soil	PDCTFRITLPLPIYEGVRTDPTQFVVLPLHYTPEVEELVVEKNDYWVVKKTGDAGEFVERLDPRSR*
Ga0134128_122210491	3300010373	Terrestrial Soil	SVYESIRADPRQFVVLPLHYTPEVEDLVIEEDTHWIVRKTGEAGDYVEHLDPRSR*
Ga0105239_104407254	3300010375	Corn Rhizosphere	FRISLPLSVYESIRADPQQFVVLPLHYTPEVEDLVIEEDTHWIVRKTGEAGEYVEHLDPRSR*
Ga0134122_108645113	3300010400	Terrestrial Soil	EAVRADAKQFVVLPDHYTPEVEDLVLKEDTYWVVKKTGDAGEYVEQMDPRSRD*
Ga0134122_115385173	3300010400	Terrestrial Soil	DCTFRISLTHAEYGAVRADPRQFVVLPLHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR*
Ga0151490_12216332	3300011107	Soil	KQFVVLPDHYTPEIEDVISKADSHWIVRKSGDAGEYVEHLDPRSR*
Ga0105246_114537353	3300011119	Miscanthus Rhizosphere	LHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR*
Ga0136621_11461071	3300012092	Polar Desert Sand	YTPEVEDLVAAHGTHWIVRKDGEAGEYVEKLNPRTR*
Ga0136619_100422471	3300012185	Polar Desert Sand	TFRLSLASADYEAVREIATQFVVLPQHYTPEIETLVAEHASHWIVSKTGAAGDYVAKLDPRSR*
Ga0136619_101032891	3300012185	Polar Desert Sand	TFQITLTGAEYESIRSDPTQFVVLPLHFTPEVETLVSESKAYWIVRKTGTAGEYVEKLDPRSRQ*
Ga0136620_103862491	3300012186	Polar Desert Sand	DSKQFVVLPLHYTPEIEELVRREETYWIVRKTGEAGEYVAQLDPRGR*
Ga0136622_104163882	3300012187	Polar Desert Sand	PTQVYESVRADATQFVVLPLHFTPEIEELVIENDTYWVVRKTGAAAEYVERLDPRSR*
Ga0137369_107066522	3300012355	Vadose Zone Soil	LHFAPEVEMLVAERETYWIVRKTGVAGEHVEKLDPRSR*
Ga0136615_101800941	3300012678	Polar Desert Sand	TADYEAVREIATQFIVLPQHYTPEIETLVAEHASHWIVSKTGAAGDYVAKLDPRSR*
Ga0136615_103104052	3300012678	Polar Desert Sand	DCTFRITLAPAEYEAVRQNPKQFVVLPNHYTPEVENLATKYETHWVVRKDGEAGAYVAKLDPRTR*
Ga0136614_101745693	3300012684	Polar Desert Sand	ASADYEAVREIATQFIVLPQHYTPEIETLVAEHASHWIVSKTGAAGDYVAKLDPRSR*
Ga0136614_102312011	3300012684	Polar Desert Sand	PSVYEAVRADPKQFVVLPDHYTPEIEELAVQEDTYWVVRKTGEAGEFVEHLDPRSR*
Ga0136614_102327763	3300012684	Polar Desert Sand	FVVLPVHFTPEVETLVSETDGHWIVRKTGQAGEYVEKLDPRSR*
Ga0157294_101373731	3300012892	Soil	LHYTPEVEELVVQEESYWVVRKTGEAGEYVEHLDPRSR*
Ga0157283_103825191	3300012907	Soil	AVYESVRADPKQFAVLPLHYTPEVEELVVQEESYWVVRKTGEAGEYVEHLDPRSR*
Ga0164306_107800172	3300012988	Soil	DPSDYEAVRSDPKQFLVLPLHYTPEIETLVAEHERYWVVRKTGEAGEYVEHLDPRSR*
Ga0173480_112092401	3300015200	Soil	LHYTPEVEDLVIEEDTHWVVRKTGEAGEYVEHLDPRSR*
Ga0132258_112890721	3300015371	Arabidopsis Rhizosphere	EIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER*
Ga0132256_1032723121	3300015372	Arabidopsis Rhizosphere	VVLPLAVYERIRSDPKQFVVLPDHYTPEIEDLVIEEDSYWVVRKSGDAGEYVEHLDPRGR
Ga0183260_104610141	3300017787	Polar Desert Sand	GDYAYFCECANVDCTFRIILSPAAYEAIRGDPKQFLVLPNHYTPEVEDLVAAHGTHWIVRKDGEAGEYVEKLNPRTR
Ga0184608_100653121	3300018028	Groundwater Sediment	VVLPLHYTPEVEDLVLKEDAHWVVRKTGEAGEYVEQLDPRSR
Ga0184620_100865922	3300018051	Groundwater Sediment	VGTFSFVYRPLRSPKLGEQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0184635_100834852	3300018072	Groundwater Sediment	VPLTVYERVRADARQFIVLPLHYTPEVEDLVAKEDAYWIVRKTGEAAEYVERLDPRSRKH
Ga0184624_103220042	3300018073	Groundwater Sediment	VVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0190275_116369973	3300018432	Soil	VLPLHYTPEVEELVVEKDDYWVVRKSGEEGEYVEELDPRQR
Ga0190268_120755212	3300018466	Soil	FCECANPDCTFRLQLPLSVYEGVRQHPTQFVMLPGHYTPEIEDLIIEEDTHWVVRKQGEAAEYVEHLDPRGR
Ga0190271_117258502	3300018481	Soil	RITLAREEYEAVRADSKQFVVLPDHYTPEIENLVAQHETHWIVRKEGDAGEYVEQLDPRS
Ga0193697_10403082	3300020005	Soil	LPLHFTPEVETLVAENKAYWIVRKTGDAGEYVEKLDPRSRHQSDA
Ga0222622_103694151	3300022756	Groundwater Sediment	DPKQFVVLPLHYTPEVEELVVEEETHWVVRKTGEAGEYVDQLDPRSR
Ga0222622_109238251	3300022756	Groundwater Sediment	DAQQFVVLPLHYTPEVEDLVVEEDAYWVIRKTGDAGDYVEQLDPRSR
Ga0222622_110351813	3300022756	Groundwater Sediment	VYESVRADPQQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0207660_116807882	3300025917	Corn Rhizosphere	THAEYGAVRADPRQFVVLPLHFTPEVETLVTTTEGYWLVRKTGEAGEFAEKLDPRSR
Ga0207669_110898331	3300025937	Miscanthus Rhizosphere	SDCTFRIALPIATYEAVRADAKQFVVLPDHYTPEVEDLVLKEDTYWVVKKTGDAGEYVEQMDPRSRE
Ga0207691_108144301	3300025940	Miscanthus Rhizosphere	SIRSDPKQFVVLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER
Ga0207661_121498702	3300025944	Corn Rhizosphere	EGVRADPTQFVVLPMHYTPEIEELVAEEETHWVVRKPGEAGEYVKSLDSRRR
Ga0207640_114227721	3300025981	Corn Rhizosphere	VLPDHYTPEIEDVIAKTDSHWVVRKSGDAGEYVEHLDPRSRDTQPER
Ga0207678_117590191	3300026067	Corn Rhizosphere	VVLPLHFTPEVETLVVKNENHWLVRKTGDAGDYVEKLDPRSR
Ga0268264_103441601	3300028381	Switchgrass Rhizosphere	IRADPRQFVVLPLHYTPEVEDLVIEEDTHWIVRKTGEAGDYVEHLDPRSR
Ga0307279_100298823	3300028709	Soil	FRLTLPLKVYESVRADPQQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307317_102314322	3300028720	Soil	YTPEIETLVAEHEGYWVVRKTGEAGAYVEHLDPRSR
Ga0307316_101192251	3300028755	Soil	VRADAQQFVVLLLHYTPEVEDLVVEEDAYWVIRKTGDAGDYVEQLDPRSR
Ga0307320_100076028	3300028771	Soil	CANPDCAFRVTLTHAQYESVRANPKQFVVLPDHFTPEVETLVTKNEGHWLVRKTGGAGDYVEKLDPRSR
Ga0307320_102366471	3300028771	Soil	DPQQFLVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307320_102814393	3300028771	Soil	QFVVLPDHYTPEVEELAIQEEAYWVVRKTGEAGDYVEQMDPRSR
Ga0307282_100364811	3300028784	Soil	RANPKQFVVLPDHFTPEVETLVTKNEGHWLVRKTGEAGDYVAKLDPRSR
Ga0307323_102122712	3300028787	Soil	KQFVVLPDHFTPEVETLVTKNEGHWLVRKTGEAGDYVEKLDPRSR
Ga0307287_100011701	3300028796	Soil	VVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPR
Ga0307287_100750514	3300028796	Soil	LHFTPEVETLVTKNEGHWLVRKTGEAGDYVEKLDPRSR
Ga0307284_102992701	3300028799	Soil	RANPKQFVVLPDHFTPEVETLVTKNEGHWLVRKTGEAGDYVEKLDPRSR
Ga0307305_104475281	3300028807	Soil	YRSTNTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307294_101453581	3300028810	Soil	LPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307292_103937882	3300028811	Soil	AECTFRLTLPLKVYESVRADPQQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307302_103473673	3300028814	Soil	DPQQFVVLPLHYTPEVEDLVLKEAAYWVVRKTGEAGEYVEQLDPRSR
Ga0307296_104974491	3300028819	Soil	TLTHAQYESVRANPKQFVVLPLHFTPEVETLVTKNEGHWLVRKTGEAGDYVEKLDPRSR
Ga0307310_100173926	3300028824	Soil	RADPQQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307310_104863891	3300028824	Soil	VGTFSFVYRPLRSPKLGEQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDP
Ga0307310_107472821	3300028824	Soil	FRLMLTRSQYESVRADPTQFVVLPLHFTPEVETMAGEYEGYWIVRKTGEAGDYVESIDPRSR
Ga0307286_102553053	3300028876	Soil	YRPLRSPKLGEQFVVLPLHYTPEVEDLVLKEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0307277_100161277	3300028881	Soil	CANPDCAFRVTLTHAQYESVRANPKQFVVLPDHFTPEVETLVTKNEGHWLVRKTGEAGDYVEKLDPRSR
Ga0307277_103726102	3300028881	Soil	VYESIRADAQQFVVLPLHYTPEVEELVVEEDAYWVVRKTGEAGEYVEQLDPRSR
Ga0247827_113125902	3300028889	Soil	HYTPEVEDLVVEEDDYWIVRKTGEAGEFVDRIDPRSR
Ga0310900_115111951	3300031908	Soil	PQQFVVLPLHYTPEVEDLVIEEDTHWIVRKTGEAGEYVEHLDPRSR
Ga0308175_1002029221	3300031938	Soil	HYTPEVEDLIIEEDTHWVVRKTGEAGEYVEQLDPRSR
Ga0308175_1012750092	3300031938	Soil	TPEVETLVSKTEGYWLVRKTGEAGEYAEKLDPRSRNSTG
Ga0308176_113946572	3300031996	Soil	FVVLPMHFTPEVETLVTKNEGYWLVRKTGDAGEYAERLDPRSR
Ga0247829_105254313	3300033550	Soil	QFVVLPDHYTPEIEELISKADSHWIVRKSGDAGEYVEHLDPRSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094565

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences