Basic Information | |
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Family ID | F094559 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 49 residues |
Representative Sequence | MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGA |
Number of Associated Samples | 82 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 8.49 % |
% of genes from short scaffolds (< 2000 bps) | 6.60 % |
Associated GOLD sequencing projects | 79 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.20 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (97.170 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.585 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.132 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.679 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 5.56% β-sheet: 8.33% Coil/Unstructured: 86.11% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.20 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Serpentine Soil Agricultural Soil Soil Soil Soil Groundwater Sand Soil Soil Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Corn Rhizosphere Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1100991072 | 3300000956 | Soil | MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAV |
F14TB_1004505331 | 3300001431 | Soil | MRYQVGAEQLQQVPTLVHRPDSPFRPSRAAPVGPTHAVSTRTG |
Ga0068861_1012495211 | 3300005719 | Switchgrass Rhizosphere | MLPRFHAGGLPMRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAVSTRTGEVACGFKVDELEVLDQD |
Ga0074051_116785631 | 3300006572 | Soil | MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTH |
Ga0075428_1001686021 | 3300006844 | Populus Rhizosphere | MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAH |
Ga0075421_1005632893 | 3300006845 | Populus Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGITVDGLEVLDQDWEE |
Ga0075431_1002837513 | 3300006847 | Populus Rhizosphere | MRYKIGAEQLQQVPTLLHRPDTAFRASRVAPAGPTHAVSTRTG |
Ga0075433_100377151 | 3300006852 | Populus Rhizosphere | MRYKVGAEQLQPARLLVHRPDTVFGAGRTAPVGPTHAVCARTGAIVCG |
Ga0075420_1016976301 | 3300006853 | Populus Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAA |
Ga0075424_1025603271 | 3300006904 | Populus Rhizosphere | MRYKVGAEQVEHVLSLAHRPDGVFRAARTAPVGPTHAVDAATDAVACGIKTDGLDVLDQDWEEA |
Ga0075419_113181063 | 3300006969 | Populus Rhizosphere | MRYKVGAEQLQRVPSLAHRADGVFRVARTAPVGPTHAVCAVTGAT |
Ga0079218_115578692 | 3300007004 | Agricultural Soil | MCDRVGAEQLQQAPSPGPRADGVCRSARTALVGPTHAVAAATGTAACGI |
Ga0105679_102584602 | 3300007790 | Soil | MRYKLGAGQIRQVPSLVHRPTGVFRAARTAPVGPTHAVCVSSGTAV |
Ga0075418_103658861 | 3300009100 | Populus Rhizosphere | MRYKVGAEQLQQVPSLAHRADGVFRVARTAPVGPTHAVCAVTGATVCGIE |
Ga0114129_131915212 | 3300009147 | Populus Rhizosphere | MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGA |
Ga0075423_125025541 | 3300009162 | Populus Rhizosphere | MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAHAVDAGSGRVACGIS |
Ga0126307_112828231 | 3300009789 | Serpentine Soil | MRYKVGAEQVEQVPSLAHRPDGVFRGVRTAPVGPTHAVDAATGAAACGIKAHELDVL |
Ga0126307_115198481 | 3300009789 | Serpentine Soil | MRYKVGAEQLEQVPSMVRRPNGVFRSARITPVGPTHAVATAS |
Ga0105080_10504771 | 3300009797 | Groundwater Sand | MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHAVNAATGTVACGM |
Ga0105056_10460421 | 3300009801 | Groundwater Sand | MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGATHAVDT |
Ga0105088_10993511 | 3300009810 | Groundwater Sand | MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHA |
Ga0105085_10236663 | 3300009820 | Groundwater Sand | MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGPTHAVD |
Ga0105068_10609721 | 3300009836 | Groundwater Sand | MRYKVGAEQVEQIPSLAHRPDGVFRSARTAPVGPTHAVDAATGAVACGIKGRG |
Ga0126313_101648331 | 3300009840 | Serpentine Soil | MRYKVGAEQLEQIPSMAHRPDGVFRSARTVPVGPTHAVDAATGAIACG |
Ga0126315_102033382 | 3300010038 | Serpentine Soil | MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAVSTRTGEAACGIRADGLEVLDQDWE |
Ga0126309_110562051 | 3300010039 | Serpentine Soil | MRYKVGAEQLQQVPSLVYRPETVFRAARTAPVGPTHAV |
Ga0126308_102834801 | 3300010040 | Serpentine Soil | MRYRVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHA |
Ga0126312_111705732 | 3300010041 | Serpentine Soil | MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGE |
Ga0126314_107136422 | 3300010042 | Serpentine Soil | MRYKLGAEQIRQVPSLAHRPDRVFRVARTAPVGPTHAVCASTGATVCG |
Ga0126314_113901701 | 3300010042 | Serpentine Soil | MRYRVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHAVSTKTGKAACGIKADGLEVLDQDWEE |
Ga0126310_102476761 | 3300010044 | Serpentine Soil | MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGIEADGLAVLDQD |
Ga0126306_102988162 | 3300010166 | Serpentine Soil | MRFKVGAEQLQQVPSLVHRSTGVFRVARTTPVGPTHAVDAATGVAVCGIKTEGLDVLD* |
Ga0138513_1000318291 | 3300011000 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAPIGPTHAVCATTGATVCGI |
Ga0137383_113317791 | 3300012199 | Vadose Zone Soil | MRYKVGAEQLEHVPSLAHRPDGVFRVARTAPVGPTHAVDA |
Ga0137372_105104092 | 3300012350 | Vadose Zone Soil | MRFRVGAEQLEQVPSLAHRPDGVFRVARTAPVGPTHAVD |
Ga0137372_106700141 | 3300012350 | Vadose Zone Soil | MRYKVGAEQLEQVPSLAHRPDGVFRVARTAPVGPTHAV |
Ga0137367_111533771 | 3300012353 | Vadose Zone Soil | VRYKVGAERVEQVPPLAHRPDEVVRSARTTPVGPTHAVDAATG |
Ga0137369_100720814 | 3300012355 | Vadose Zone Soil | MRYKVGAEQVEQVPPLAHRPDEVVRSARTAPVGPTHAVDAATGAVVCGINTDA |
Ga0137369_100765821 | 3300012355 | Vadose Zone Soil | VRYKVGAERVEQVPPLAHRPDEVVRSARTAPVGPTHAVDAATGAVACG |
Ga0137369_100822994 | 3300012355 | Vadose Zone Soil | MRYKVGAEQVEQIPSLAHRPDGVFRSARTAPIGTTYAVDAATGAVALRDHGPQA* |
Ga0137369_111097421 | 3300012355 | Vadose Zone Soil | MRYKVGAEQLEQIPALAQRPDGVFRLARTAPVGPTHAVDAASGAVA |
Ga0137368_106795062 | 3300012358 | Vadose Zone Soil | MRYKVGAEQLEQVPSMTHRPDGTFRAARTAPIGPTHAVDAATGLVACGITTDG |
Ga0157372_118101972 | 3300013307 | Corn Rhizosphere | MRYMVGAEQLQQVPSLAHRPDTVFRVARTAPVGPTHAVCAVTGATVCGINTEALEVLN |
Ga0157372_126134092 | 3300013307 | Corn Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAV |
Ga0182000_103348231 | 3300014487 | Soil | MRYKVEAEQLQQVPTLLHRPDTAFRASRTAPVGPTHAVSTRTGEAACGIRADGLEVLDQDWEEAFF |
Ga0184620_103028651 | 3300018051 | Groundwater Sediment | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAATGAAACGIKADQLQVR |
Ga0184621_102331431 | 3300018054 | Groundwater Sediment | MRYKIGAEQLQQVPSLVHRPGTVFQVARTAPVGPTH |
Ga0184617_11205671 | 3300018066 | Groundwater Sediment | MRYKVGAEQLEHVPSLAHRPDSVFRVARTAPVGHTHA |
Ga0184635_102179652 | 3300018072 | Groundwater Sediment | MRYKIGAEQLQQVPTLLHRPDTTFRAGRVAPAGPTHAVSTRNGQAACGIT |
Ga0184612_100396544 | 3300018078 | Groundwater Sediment | MRYKVGAEQLQQVPSLAHRADGVFRVARTAPVGPTHA |
Ga0224452_10239913 | 3300022534 | Groundwater Sediment | MRYKVGAEQLERVPSLAHRPDGVFRGARTAPVGPTHAVDAT |
Ga0222622_106864761 | 3300022756 | Groundwater Sediment | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCA |
Ga0207675_1020053351 | 3300026118 | Switchgrass Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTVPAGPTHAVST |
Ga0209845_10492761 | 3300027324 | Groundwater Sand | MRYKVGAEQLEQIPALAQRPDGVFRLARTAPVGPTHAVDATTGAAACGTVADGL |
Ga0209874_11002341 | 3300027577 | Groundwater Sand | MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGPTHAVDA |
Ga0209382_104758291 | 3300027909 | Populus Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGITVDGLEVLDQDWE |
Ga0209859_10038445 | 3300027954 | Groundwater Sand | MRYKVGAEQVEQIPSLAHRPDGVFRLARTAPVGATHAVDTATGAVACGTQGHRLDVLDQDWE |
Ga0209859_10741111 | 3300027954 | Groundwater Sand | MRYKVGAEQMEQVPSLAHRPDGVFRAARTTPVGPTHAVNAATGTVACG |
Ga0247828_111329972 | 3300028587 | Soil | MRYKVGAEQLERVPAMAYRPGGVYRAPRIAAVGPA |
Ga0247818_103047561 | 3300028589 | Soil | MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTVCG |
Ga0307293_102476871 | 3300028711 | Soil | MRYLVGVEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTVCGIKAD |
Ga0307293_102563141 | 3300028711 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAST |
Ga0307298_101507421 | 3300028717 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTH |
Ga0307301_101661131 | 3300028719 | Soil | MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTRRHHM |
Ga0307317_101811801 | 3300028720 | Soil | MRYKVGAEQLQQVPTLLHRPDTTFRAGRVAPAGPTHAVSTRNGQAACGITA |
Ga0307315_102304472 | 3300028721 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCASTGAAACGIKADQLQVLDQD |
Ga0307319_100661382 | 3300028722 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAPIGPTHAVCATTGATVCGIAGRLEVL |
Ga0307319_101586982 | 3300028722 | Soil | MLPGSEGGDAQMRYKVGAEQVEQVPSLAHRPDGVFRAPRTVPVGPTHAVDAATDVVACGIKTDG |
Ga0307316_104008391 | 3300028755 | Soil | MRYKIGAEQLQHVPSLAHRPDTVFRVARTAPVGPTHAVCVVTGTVVCGTKTDRLEVLD |
Ga0307280_103425481 | 3300028768 | Soil | MRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAGTGAAACGIKTH |
Ga0307320_104141391 | 3300028771 | Soil | MRYKVGAEHMEHVPSLAHRPDGVFRGVRAAPVGPTHAVDAATGAAACGIKTHGL |
Ga0307288_103028241 | 3300028778 | Soil | MLPGVGRWGLQMRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAATGAVACGIKTHGLD |
Ga0247824_110824351 | 3300028809 | Soil | MRDRVGAEQLQQVPSLAYRPDGGFRVARTAPVGPTHAVCATTGATVCGVKAEAGKLEVMNED |
Ga0307292_100457441 | 3300028811 | Soil | MRYKIGAEQLQHVPSLAHRPDTVFRVARTAPVGPTHAVCVVTGTVVCGTKTDRLEVLDQDWEAA |
Ga0307302_100037581 | 3300028814 | Soil | MLPGSDGGGAKVRYKVGAEQVEQVPSLAHRPDGVFRAARTAPVGPVDAATGAVACGI |
Ga0307296_104913841 | 3300028819 | Soil | MRYKVGAEQVEHVPSLAHRPDGVFRGVRTAPVGPTHAVDAGTGAAAC |
Ga0307296_107357091 | 3300028819 | Soil | MRYSLGAEQLQQVPSLVYRPDTVFRAARTAPVGPTHAVCAATGAVACGIKADRLQ |
Ga0307289_102063172 | 3300028875 | Soil | MRYKVGAEQLQQVPTLLHRPDTAFRAGRVAPAGPTHAVSTRTGQAACGIKAEGLAVLDQD |
Ga0307286_100194606 | 3300028876 | Soil | MRYMVGAEQLQQVPSLVHRPDGVFRVARTAPVGPTHAVCAVTGVTVCGIKADTLEVLNEDWEAAC |
Ga0307286_100500332 | 3300028876 | Soil | MRYKVGAEQVEHVPSLAHRPDGVFRVARTAPVGPTHAVGAATGAAA |
Ga0307286_102268671 | 3300028876 | Soil | MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVDATTGAAACGIKTHE |
Ga0307277_101749531 | 3300028881 | Soil | MRYKVGAEQVEHVPSLAHRPDGVFRVARTAPVGPTHAVDAATGAAACGIKTDGLEVLDQ |
Ga0307277_104966252 | 3300028881 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCAATGA |
Ga0307304_103364032 | 3300028885 | Soil | MRYKVGAEQLQQVPTLLHRPDTAFRAGRVAPAGPTHAVSTRTGQAACGIKAEGLA |
Ga0247826_103518691 | 3300030336 | Soil | MRYMVGAEQLQQGPSLAHRPDGVFRVARTAAVGPTHAVCA |
Ga0308187_100690053 | 3300031114 | Soil | MRYKVGAEQLQQVPSLVHRPDTVFRVARTAAVGPTHAVCASTGAAACGIKADQLQVLDQDWE |
Ga0308187_102090262 | 3300031114 | Soil | MRYKVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTAR |
Ga0307408_1009045751 | 3300031548 | Rhizosphere | MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVPDQD |
Ga0307408_1020515881 | 3300031548 | Rhizosphere | MRYKVGAEQLEHVPSLAHRPDGVFRVVRTAPVGPTHAVDAATGAAACGIKA |
Ga0307405_116714251 | 3300031731 | Rhizosphere | MRYNVGAEQLQQVPSLVHRPDTVFRAARTAPVGPTHAVCAATGAVACGIKGDRLQVL |
Ga0307413_102555852 | 3300031824 | Rhizosphere | MRYKVGAERLQQVPSLVHRPDTVFRAARTAPVGPTHAVCAATGAVACGIKA |
Ga0307413_108906891 | 3300031824 | Rhizosphere | MRYRVGAEQLQQVPTLLHRPDTAFRASRVAPAGPTHAVSTRTGK |
Ga0307413_117413032 | 3300031824 | Rhizosphere | VRYKVGAEHLEQVPSLAHRPDGVFRAARAAPVGPTHAVDAATGAVACGIKA |
Ga0307410_101276051 | 3300031852 | Rhizosphere | MRYKAEQLQQVPTFVHRPDTAFRASRTAPAGLTHAVSTRTGEAACG |
Ga0307410_112490381 | 3300031852 | Rhizosphere | MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVLDQD |
Ga0307406_104355542 | 3300031901 | Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEA |
Ga0307406_113702432 | 3300031901 | Rhizosphere | MRYKLGAEQIRQVPSLAHRPDRVFRVARTAPVGPTHAVCASTGATVCGVGTDTLQVLDED |
Ga0307407_103303141 | 3300031903 | Rhizosphere | MRYKVGAEQLQQVPTLLHRPDTAFRASRTAPAGPTHAVSTRTGEAACGV |
Ga0307407_106266731 | 3300031903 | Rhizosphere | MRYRVGAEQLQQVPTLVHRPDTAFRASRTAPAGPTHAVSTRTGEAACGVKVDGLEVLD |
Ga0307407_113220611 | 3300031903 | Rhizosphere | MRYKVGAEQLQQVPTLVHRPDTAFRASRVAPAGPTHAVSTRTGEAACGITAA |
Ga0307409_1027472601 | 3300031995 | Rhizosphere | MRYQVGAEELERVPSMAHRPDGRFRLTRTTPVGPTHAVAMASDA |
Ga0307416_1012497533 | 3300032002 | Rhizosphere | MRYKVGAEQLERVPSLAHRPDGVFRVARTAPVGPTHAVCARTGATVCGIKAEELEVLSED |
Ga0307416_1032563001 | 3300032002 | Rhizosphere | MRYKVGAEQLEQVPSMVRRPNGVFRSARITPIGPTHAVATASDAT |
Ga0268251_100615812 | 3300032159 | Agave | MRYKVGAEQLEQVPPLAHRPDGVFRPARTAPVGPTHAVDATSGAVACGITTEGLEVLDPA |
Ga0247830_101575871 | 3300033551 | Soil | MRYMVGAEQLQQVPSLAHRPDGVFRVARTAPVGPTHAVCAVTGVTICG |
Ga0247830_103765624 | 3300033551 | Soil | MRYKVGAEQLERVPAMAYRPGGVYRAPRIAPVGPAHAVD |
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