Metagenome / Metatranscriptome Family F094511

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094511
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	44 residues
Representative Sequence	DNEEIRPLSANRNTIKAMERRGLISPGKGRDPLTIVWRLKKKQP
Number of Associated Samples	89
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.86 %
% of genes near scaffold ends (potentially truncated)	88.68 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.566 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.830 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 16.67% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02586	SRAP	9.43
PF00892	EamA	6.60
PF00561	Abhydrolase_1	2.83
PF12680	SnoaL_2	1.89
PF14367	DUF4411	1.89
PF03150	CCP_MauG	1.89
PF11154	DUF2934	1.89
PF12833	HTH_18	1.89
PF13787	HXXEE	0.94
PF02581	TMP-TENI	0.94
PF00239	Resolvase	0.94
PF07494	Reg_prop	0.94
PF00926	DHBP_synthase	0.94
PF13533	Biotin_lipoyl_2	0.94
PF13424	TPR_12	0.94
PF02518	HATPase_c	0.94
PF00069	Pkinase	0.94
PF03808	Glyco_tran_WecG	0.94
PF06532	NrsF	0.94
PF10431	ClpB_D2-small	0.94
PF00857	Isochorismatase	0.94
PF01047	MarR	0.94
PF13618	Gluconate_2-dh3	0.94
PF10091	Glycoamylase	0.94
PF04794	YdjC	0.94
PF13517	FG-GAP_3	0.94
PF00403	HMA	0.94
PF00589	Phage_integrase	0.94
PF13431	TPR_17	0.94
PF04664	OGFr_N	0.94
PF07885	Ion_trans_2	0.94
PF08486	SpoIID	0.94
PF01636	APH	0.94
PF02739	5_3_exonuc_N	0.94
PF00903	Glyoxalase	0.94
PF11005	DUF2844	0.94
PF04055	Radical_SAM	0.94
PF00343	Phosphorylase	0.94
PF00106	adh_short	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	9.43
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.77
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.94
COG4944	Uncharacterized conserved protein	Function unknown [S]	0.94
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	0.94
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	0.94
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.94
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.94
COG2385	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.94
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.94
COG1922	UDP-N-acetyl-D-mannosaminuronic acid transferase, WecB/TagA/CpsF family	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.94
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.94
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.94
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.57 %
Unclassified	root	N/A	9.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.66 %
Unclassified	root	N/A	9.43 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.89 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	33.02 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.43 %
Unclassified	root	N/A	9.43 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.02 %
Unclassified	root	N/A	9.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.49 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.89 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.94 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.02 %
Unclassified	root	N/A	9.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.49 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %
Planctomycetes bacterium ADurb.Bin126	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.02 %
Unclassified	root	N/A	9.43 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	3.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.89 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %
Planctomycetes bacterium ADurb.Bin126	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.02 %
Unclassified	root	N/A	9.43 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	3.77 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.89 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %
Planctomycetes bacterium ADurb.Bin126	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10038917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300001593\|JGI12635J15846_10256548	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300004080\|Ga0062385_10030715	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300004080\|Ga0062385_11146536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005171\|Ga0066677_10247115	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1012	Open in IMG/M
3300005176\|Ga0066679_10663299	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300005177\|Ga0066690_10254230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1180	Open in IMG/M
3300005179\|Ga0066684_10892085	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300005434\|Ga0070709_11650796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300005436\|Ga0070713_100746248	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300005436\|Ga0070713_101438397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300005534\|Ga0070735_10134325	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300005541\|Ga0070733_10925286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300005568\|Ga0066703_10318458	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	939	Open in IMG/M
3300005602\|Ga0070762_10035604	All Organisms → cellular organisms → Bacteria	2689	Open in IMG/M
3300005889\|Ga0075290_1069616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300005995\|Ga0066790_10392973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300006050\|Ga0075028_100635368	Not Available	637	Open in IMG/M
3300009137\|Ga0066709_104189680	Not Available	525	Open in IMG/M
3300009643\|Ga0116110_1212579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	625	Open in IMG/M
3300009665\|Ga0116135_1378212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300009700\|Ga0116217_10046549	All Organisms → cellular organisms → Bacteria	3172	Open in IMG/M
3300009700\|Ga0116217_10143485	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300009759\|Ga0116101_1053456	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300009759\|Ga0116101_1114643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300009759\|Ga0116101_1151490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300010046\|Ga0126384_10001448	All Organisms → cellular organisms → Bacteria	14098	Open in IMG/M
3300012209\|Ga0137379_11421514	Not Available	596	Open in IMG/M
3300012209\|Ga0137379_11722313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300012211\|Ga0137377_10875188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300012469\|Ga0150984_119369252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300014156\|Ga0181518_10433107	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300014164\|Ga0181532_10103411	All Organisms → cellular organisms → Bacteria → Acidobacteria	1771	Open in IMG/M
3300014169\|Ga0181531_10910319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300014489\|Ga0182018_10607957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300014657\|Ga0181522_10159704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1320	Open in IMG/M
3300017933\|Ga0187801_10314813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300017933\|Ga0187801_10508997	Not Available	508	Open in IMG/M
3300017936\|Ga0187821_10109696	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300017946\|Ga0187879_10806930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300017996\|Ga0187891_1218170	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300017998\|Ga0187870_1202735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	697	Open in IMG/M
3300018003\|Ga0187876_1161017	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300018003\|Ga0187876_1185377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300018013\|Ga0187873_1252430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300018014\|Ga0187860_1224955	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300018018\|Ga0187886_1185013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300018022\|Ga0187864_10069942	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300018022\|Ga0187864_10112140	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1400	Open in IMG/M
3300018024\|Ga0187881_10191318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300018025\|Ga0187885_10274648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300018034\|Ga0187863_10264299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	956	Open in IMG/M
3300018042\|Ga0187871_10040836	All Organisms → cellular organisms → Bacteria → Acidobacteria	2843	Open in IMG/M
3300018047\|Ga0187859_10218474	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300020582\|Ga0210395_10045732	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300020583\|Ga0210401_10487571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300020583\|Ga0210401_10556209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1009	Open in IMG/M
3300021180\|Ga0210396_10473605	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300021181\|Ga0210388_10005836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9639	Open in IMG/M
3300021181\|Ga0210388_10380777	All Organisms → cellular organisms → Bacteria → Acidobacteria	1240	Open in IMG/M
3300021181\|Ga0210388_11048882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300021401\|Ga0210393_11265244	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300021403\|Ga0210397_10152326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1617	Open in IMG/M
3300021404\|Ga0210389_11557071	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300021433\|Ga0210391_10677156	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300021474\|Ga0210390_10134777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2076	Open in IMG/M
3300021477\|Ga0210398_10018323	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6020	Open in IMG/M
3300021477\|Ga0210398_10304489	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300021478\|Ga0210402_11269425	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300021479\|Ga0210410_11069597	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300022521\|Ga0224541_1009206	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300022531\|Ga0242660_1063378	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300023068\|Ga0224554_1060145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	958	Open in IMG/M
3300024225\|Ga0224572_1016988	All Organisms → cellular organisms → Bacteria → Proteobacteria	1396	Open in IMG/M
3300025906\|Ga0207699_10401500	Not Available	976	Open in IMG/M
3300025928\|Ga0207700_10067433	All Organisms → cellular organisms → Bacteria	2739	Open in IMG/M
3300026530\|Ga0209807_1190458	Not Available	734	Open in IMG/M
3300026552\|Ga0209577_10480420	Not Available	842	Open in IMG/M
3300027071\|Ga0209214_1022734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300027117\|Ga0209732_1008650	All Organisms → cellular organisms → Bacteria → Acidobacteria	1691	Open in IMG/M
3300027604\|Ga0208324_1045498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1288	Open in IMG/M
3300027648\|Ga0209420_1070131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300027853\|Ga0209274_10105537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1393	Open in IMG/M
3300027854\|Ga0209517_10000442	All Organisms → cellular organisms → Bacteria	70400	Open in IMG/M
3300027879\|Ga0209169_10000831	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19014	Open in IMG/M
3300028906\|Ga0308309_11076931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	695	Open in IMG/M
3300029917\|Ga0311326_10456352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	628	Open in IMG/M
3300029982\|Ga0302277_1245102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300030007\|Ga0311338_10486499	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300030057\|Ga0302176_10049655	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300031028\|Ga0302180_10105625	All Organisms → cellular organisms → Bacteria → Acidobacteria	1607	Open in IMG/M
3300031708\|Ga0310686_102117133	All Organisms → cellular organisms → Bacteria → Acidobacteria	2155	Open in IMG/M
3300031708\|Ga0310686_107443172	All Organisms → cellular organisms → Bacteria → Acidobacteria	8121	Open in IMG/M
3300031708\|Ga0310686_107785988	All Organisms → cellular organisms → Bacteria	37116	Open in IMG/M
3300031708\|Ga0310686_110468973	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300031708\|Ga0310686_119447055	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031715\|Ga0307476_10001644	All Organisms → cellular organisms → Bacteria	13570	Open in IMG/M
3300031718\|Ga0307474_10156693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1720	Open in IMG/M
3300031833\|Ga0310917_10122005	Not Available	1697	Open in IMG/M
3300031910\|Ga0306923_10426307	Not Available	1507	Open in IMG/M
3300032180\|Ga0307471_100051425	All Organisms → cellular organisms → Bacteria → Acidobacteria	3402	Open in IMG/M
3300032261\|Ga0306920_100086401	All Organisms → cellular organisms → Bacteria	4623	Open in IMG/M
3300032805\|Ga0335078_10665073	All Organisms → cellular organisms → Bacteria → Acidobacteria	1299	Open in IMG/M
3300032829\|Ga0335070_11896787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300033402\|Ga0326728_10539862	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin126	932	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.81%
Aquatic	Environmental → Aquatic	28.30%
Plants	Host-Associated → Plants	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.26%
Freshwater	Environmental → Aquatic → Freshwater	27.36%
Peat	Environmental → Terrestrial → Peat	7.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	27.36%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	19.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	14.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100389173	3300001546	Forest Soil	KDNEEIRPLSANRNTIKALEQRGLIGPGKGREPLTIGWRLKSKIS*
JGI12635J15846_102565481	3300001593	Forest Soil	IRPLSAIRNTIKAMERGGLITPGKGRDPLNIVWHLKKKGS*
Ga0062385_100307151	3300004080	Bog Forest Soil	ETRPLSANRNTIKALERRGLISPGKGPDPLTIAWHLKKKQT*
Ga0062385_111465361	3300004080	Bog Forest Soil	IRPLSANRNTIKALEGRGLISPGKGREPLTIVWRLKKKID*
Ga0066677_102471151	3300005171	Soil	LKDNEEMRPLSANRNTIKAMEQRGLISPGNGRDSLSIVWRLKKKQP*
Ga0066679_106632992	3300005176	Soil	RPLSANRNTIKAMERRGLISPGKGRDPLTIAWRLKKKQP*
Ga0066690_102542303	3300005177	Soil	GNPILRRAKDDEVIRPRSANRNTIKALEERGLIRSDRGRDLLTMVWHTNKKR*
Ga0066684_108920851	3300005179	Soil	PVLLRLKDNEEIRPLSANRNTIKAMERRGLIRPGKGRDPLTIAWRLKRKQP*
Ga0070709_116507961	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EEIRPLSANRNTIKAMERRGLISPSKGRDLLSIVWCLKEK*
Ga0070713_1007462481	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RLKDNEVIRPISANRNTIKALEERGLISPGKGRDLLTILWRLKKKQA*
Ga0070713_1014383972	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LEDNEEIRPLSANRNTIKAMEQRGLISPGKDRDPLTIVWRLKRKIN*
Ga0070735_101343251	3300005534	Surface Soil	LRSLKDDQEIRALSANRSTIKAMEQRGLISPGKGPDPLIIVWRLKKKAQ*
Ga0070733_109252861	3300005541	Surface Soil	RLKDDEVIRPLSANRNTIKALEERGLIHSGKGRDPLTMAWHTNKKR*
Ga0066703_103184582	3300005568	Soil	NRNTIKAMERRGLISPGKGRDPLTIVWRLKKKQP*
Ga0070762_100356045	3300005602	Soil	PLSATRNTIKAMEQRGFIVPVKGRDPLTILWRLKKKIN*
Ga0075290_10696162	3300005889	Rice Paddy Soil	KNDEAIRPLSANRNSIKALQERALITPGKGRDPLTISWRLKKTAN*
Ga0066790_103929732	3300005995	Soil	NPILRRLKDEEEIRPLSANRNTIKAMEDRGLISPGKGRGPLTILWRLKKRIN*
Ga0075028_1006353682	3300006050	Watersheds	NPILRRLKDDEVVRPLSANRNTIKALEERGLIHSGKGNDPLTIVWHTNKKR*
Ga0066709_1041896801	3300009137	Grasslands Soil	RRSKDDEGIRPLSANRNTIKAMEQRGLISPGKGRDALTIMWRLKKK*
Ga0116110_12125791	3300009643	Peatland	IRPLSANRNTIKALEERGLISPGKGRDPLTIMWRLKKK*
Ga0116135_13782122	3300009665	Peatland	MLRRLRQSEEKGALGASGNTIRAMERRGLIRTGKGRDPLTILWRLKKKIN*
Ga0116217_100465495	3300009700	Peatlands Soil	EEMRPLSANRNTIKAMERRALIRPGKGRDPLTIV*
Ga0116217_101434854	3300009700	Peatlands Soil	LRRLKDNEEIRPLSANRNTIKALEKRGLISLGKGRDPLTIVWRLKKK*
Ga0116101_10534561	3300009759	Peatland	NEEIRPLSATRNSIKAMEQRGFISPSKGRDPLTILWCLNKK*
Ga0116101_11146432	3300009759	Peatland	FLRRLKDNEEVRPLSANRNTVKAMEQRGLISPGKGRDLLTTLWRLKRKSP*
Ga0116101_11514901	3300009759	Peatland	EIRPLSANRNTIKAMEQRGLISPGKGRDPLTIVWRLKKK*
Ga0126384_100014481	3300010046	Tropical Forest Soil	QNKDRANRSTIKAMEERGLISPSKSDDPLVWRVTKKTGK*
Ga0137379_114215141	3300012209	Vadose Zone Soil	VLRRSKNDEGIRPLSANRNTIKAMEQRGLISPGKGRDALTIVWRLNKKIK*
Ga0137379_117223132	3300012209	Vadose Zone Soil	EIRPLSANRNTIKALERRGLINPGKGRDPLTIVWRLKKKRT*
Ga0137377_108751882	3300012211	Vadose Zone Soil	LKDDEVIRPASANRNTIKAMEKRGLIRPAGKGRDPLTIVWHLQKKAK*
Ga0150984_1193692521	3300012469	Avena Fatua Rhizosphere	KNDEAIRPLSANRNSIKALQERGLITPGKGRDPLTISWRLKKTSK*
Ga0181518_104331072	3300014156	Bog	VLRRLKDNEEIRPLAANRNTIKAMEKRGLISPGKGRDPLTIVWRLKKKVNY*
Ga0181532_101034114	3300014164	Bog	LRRLKDNEAIRPLSANRNTIKALEERGLISPGKGRDPLTIMWRLKKK*
Ga0181531_109103192	3300014169	Bog	LKRNEEICPLSANRNTIKAMERRGLISPGKGLEALTIEWRL
Ga0182018_106079571	3300014489	Palsa	NEEIRPLSANRNTIKAMERRGVITPGKGRDLLTIVWRLKRK*
Ga0181522_101597041	3300014657	Bog	KDKAEIRPLSATRNTIKAMEQRGLISPEKGRDPLTLGWRLKRK*
Ga0182039_104751452	3300016422	Soil	LKDGEVIRPLSANVSTVKALEERGLIHPGKGRDPLTIVWRLKENPM
Ga0187801_103148131	3300017933	Freshwater Sediment	PLSANRNTIKALEQRGLISPGKSRDPLTIVWRLKKKQP
Ga0187801_105089971	3300017933	Freshwater Sediment	SANRNTIKALEQRGLISPDKGRDPLTIVWRLKKKQP
Ga0187821_101096962	3300017936	Freshwater Sediment	KDNEVIRPLSAKRSTIKSLEQRGLISPGKGRDPLTILWRLKKKTK
Ga0187879_108069301	3300017946	Peatland	LGGNPILRRLKDNEEIRPLSANRNTIRAMERRGLISPGKGRDPLTILWRLKKKIN
Ga0187891_12181702	3300017996	Peatland	ANRNTAKAMEQRGLISPGKGRDPLTIVWRLKKKIN
Ga0187870_12027351	3300017998	Peatland	PLSANRSTIKALEQRGFINPGKGRDPLTIVWRLKKKTN
Ga0187876_11610173	3300018003	Peatland	SANRNTIKAMEQRGLIRPGKGRDPLTIVWRLKKKIN
Ga0187876_11853771	3300018003	Peatland	SANRNTIKALEGRGLISPGKGRDPFAIVWRLKKKID
Ga0187873_12524302	3300018013	Peatland	GGNPVLRRLKDNEEIRPLSANRNTIKAMEQRGLISPGKGRDPLTIVWRLKKK
Ga0187860_12249552	3300018014	Peatland	VLRRLKDNEEIRPLSANRNTIKAMEQRGLISPGKGRDPLTIVWRLKKK
Ga0187886_11850131	3300018018	Peatland	ANRNTIKAMEKRGLISPGKGRDPLTIVWRLKKKVNY
Ga0187864_100699421	3300018022	Peatland	QEIRPLSANRNTIKAMERRGLISPGKGRDPLIIVWRLKKKIN
Ga0187864_101121405	3300018022	Peatland	NQEIRPLSANRNTIKAMERRGLISPGKGRDPLIIVWRLKKKID
Ga0187881_101913181	3300018024	Peatland	RLKDNEEIRPLSANRNTIKAMEQRGLISPGKGRDPLTIVWRLKKK
Ga0187885_102746482	3300018025	Peatland	LKLIRSAVTPVLRRLKDNEEIRPLSANRNTIKGMERRGLITPGKGRDLLTIVWRLKKKIK
Ga0187863_102642991	3300018034	Peatland	PVLRRLKDNEEIRPLSVNRNTVKAMEQRGLIRPSKGRDPLTIVWRLKKKIN
Ga0187871_100408361	3300018042	Peatland	VPPLPANRNTIKAIERRGLISPDKGHDPFAIVWRLEKKAK
Ga0187859_102184742	3300018047	Peatland	LKDNEEIRPLSANRNTIKALEKRGLISPGKGRDPLTIAWRLEKKIK
Ga0210395_100457324	3300020582	Soil	MSASANRNTIKALEQRGLISPGKGHGPLTILWRLKRKTDQE
Ga0210401_104875713	3300020583	Soil	VIRPLSANRNTIKALEERGLIQSGKGRDPLTMVWHANKKR
Ga0210401_105562091	3300020583	Soil	LGGNPILRRLKDDEEIRPLSANRNTIKALERRGLIGPGKGRDPLTILWRLKRKMN
Ga0210396_104736053	3300021180	Soil	SANRNTIKAMERRGLISPGKGRNPLTIVWRLKKKID
Ga0210388_100058361	3300021181	Soil	LKDNEEIRALSANRNTIKAMEQRGLIIPGKGRDPLTIVWRLKKR
Ga0210388_103807771	3300021181	Soil	ASANRNTIKALEQRGLISPGKGHGPLTILWRLKRKTDQE
Ga0210388_110488821	3300021181	Soil	EEIRPRSANRNTIKAMEQRGLISPGKGRDPLTIVWRLKKKQP
Ga0210393_112652441	3300021401	Soil	ALCPPIRNTIKAMERRGLITPSKGRDLLTIEWRLKKKQP
Ga0210397_101523262	3300021403	Soil	LKDNEEMRPLSATRNTIKALEKRGLISAGKGRDPLTMVWRLKPK
Ga0210389_115570712	3300021404	Soil	GNPVLRRLKDNEEIRALSANRNTIKAMEQRGLIVPVKGRDSLTIVWRLKKKQS
Ga0210391_106771562	3300021433	Soil	LRHLKDNEEMRPMSANRNTIKALEQRGLISPGKGRDPLTIVWDLNERLT
Ga0210390_101347773	3300021474	Soil	RLKDDEVIRPLSANRNTIKALEERGLIHSEKGRDPLTMAWHTNKKR
Ga0210398_100183236	3300021477	Soil	RLKDNEEIRPRSANRNTIKAMEQRGLISPGKGRDPLAIVWRLKKKQP
Ga0210398_103044891	3300021477	Soil	SANRNTIKAMEQRGLIIPGKGRDPLTIVWRLKKKIN
Ga0210402_112694251	3300021478	Soil	KDNAEIRPLSANRSTTKALEQRGLISPGKGRDPLTIVWRLKNK
Ga0210410_110695971	3300021479	Soil	PVLRQLKDNEEIRPLSANRNTIKAMEQRGLISPGKGRDPLTIVWGLKKKIK
Ga0224541_10092061	3300022521	Soil	DNEEIRPLSANRNTITAMEQRGLISPGQGRDPLTILWRLKKKQP
Ga0242660_10633781	3300022531	Soil	LKDNEEIRPLSANRNTIKAMEQRGLISPGKGRDPLTVGWRLKKKIN
Ga0224554_10601451	3300023068	Soil	EEIRPLSANRNTVKAMEQRGLISPGKGRDPLTIVWRLKKKIN
Ga0224572_10169881	3300024225	Rhizosphere	PMSANRNTIKALEQRGLISPGKGRDPLTIVWDLNKRLM
Ga0207699_104015002	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RPLSANRNTIKALEESGLIHSGKGNDPLTTVWHTNKKR
Ga0207700_100674335	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RLKDNEVIRPISANRNTIKALEERGLISPGKGRDLLTILWRLKKKQA
Ga0209807_11904581	3300026530	Soil	DNEEIRPLSANRNTIKAMERRGLISPGKGRDPLTIVWRLKKKQP
Ga0209577_104804202	3300026552	Soil	RRLKDNEVIRPLSANRNTIKAMEQRGLISPGKGHDPLTIAWRLKRKQP
Ga0209214_10227342	3300027071	Forest Soil	LSANRNTIKAMERRGLISPGKDRDPLTIVWRLKRKIN
Ga0209732_10086503	3300027117	Forest Soil	KDNEEIRPRSANRNTIKAMEQRGLISPGKGRDPLAIVWRLKKKQP
Ga0208324_10454982	3300027604	Peatlands Soil	PVLRHLKDNEEMRPLSANRNTIKAMERRALIRPGKGRDPLTIV
Ga0209420_10701311	3300027648	Forest Soil	LKDNEEIRPLSANRNTIKALEQRGLIGPGKGREPLTIGWRLKSKIS
Ga0209274_101055372	3300027853	Soil	LKDNEEIRPLSANRNTIKAMERRGLISPGKGRDPLTILWRLKKKIN
Ga0209517_1000044260	3300027854	Peatlands Soil	GDPILRRLKDNEVIRPLSANRNTIKALERRGLISPGEGRDPLTIVWRLKKKID
Ga0209169_100008311	3300027879	Soil	NPILRRLKDNEEMRPLSANRNTIKAMEQRGLIIPGKGRDPLTIVWRLKKR
Ga0308309_110769312	3300028906	Soil	PLSANRNTIKAMEQRGLIIPGKGRDPLTIVWRLKKDK
Ga0311326_104563521	3300029917	Bog	SANRNTIKALERRGLISPGEGRDPLTIVWRLKKKID
Ga0302277_12451021	3300029982	Bog	RPLSANRNTIKAMEERGLISPGKGRDPLTILWRLKKKQA
Ga0311338_104864993	3300030007	Palsa	EEIRPLSANRSTIKTLEQRGFISPGKGRDLLTIVWRLKKKTN
Ga0302176_100496556	3300030057	Palsa	PVLRRLKDNEEIRPLSANRNTITAMEQRGLISPGQGRDPLTILWRLKKKQP
Ga0302180_101056253	3300031028	Palsa	LKDNEEIRPLSANRNTIKAMEERGLISPGKGRDPLTIVWRLKKKIS
Ga0310686_1021171332	3300031708	Soil	LKDDEEIRHLSANRNTIKAMEQRGLISPGKGHEPLTIVWRLKKKMN
Ga0310686_1074431721	3300031708	Soil	PILRRLKDNEEIRPLSANRNTIKAMEKRGLISPDKGREPLTIAWRLKKKIK
Ga0310686_10778598835	3300031708	Soil	LKDDEEIRPLSANRRTIEALEERGLISPDKGRDPLTIVWRLKQKAK
Ga0310686_1104689731	3300031708	Soil	MRPMSANRNTIKALEQRGLISPGKGRDPLTIVWDLNERLT
Ga0310686_1194470551	3300031708	Soil	PVLRRLKDNEEIRPLSANRNTVKAMERRGLITPGKGRDPLTIVWRLKKKQP
Ga0307476_100016441	3300031715	Hardwood Forest Soil	LKDNEEIRPLSANRNTVKALERRGLISPGKGRDALTIAWRLKKK
Ga0307474_101566933	3300031718	Hardwood Forest Soil	LSANRNTIKALEERGLIHSGKGRDPLTMAWHTDKKR
Ga0310917_101220052	3300031833	Soil	PVLLRLKDGEVIRPLSANVSTVKALEERGLIHPGKGRDPLTIVWRLKENPM
Ga0306923_104263071	3300031910	Soil	AKASTVKALEERGLIHPGKGRDPLTIVWRLKENPM
Ga0307471_1000514251	3300032180	Hardwood Forest Soil	EEIRPLSANRNTIKAMVQRGLISPGKGRDPLTIVWRLKKK
Ga0306920_1000864011	3300032261	Soil	SAKASTVKALEEGGLIHPGKGRDPLTIVWRLKENPM
Ga0335078_106650734	3300032805	Soil	IRPLSANASTVKALQERGLIHAVKGRDPLTIVWRLRKK
Ga0335070_118967872	3300032829	Soil	KDGEVIRPLSANRNTIKALEERGLIRSGKGNDPLTIVWRANKQS
Ga0326728_105398623	3300033402	Peat Soil	RPLSANRNTTKALEERGLISPGKGRDPLTIVWRLKKKID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094511

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences