Metagenome Family F094470

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094470
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	NGEEALSEIMSHGAEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS
Number of Associated Samples	82
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.77 %
% of genes near scaffold ends (potentially truncated)	92.45 %
% of genes from short scaffolds (< 2000 bps)	96.23 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.377 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.962 % of family members)
Environment Ontology (ENVO)	Unclassified (36.792 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07992	Pyr_redox_2	39.62
PF12831	FAD_oxidored	5.66
PF00106	adh_short	3.77
PF02525	Flavodoxin_2	3.77
PF07494	Reg_prop	3.77
PF04542	Sigma70_r2	2.83
PF01522	Polysacc_deac_1	1.89
PF00158	Sigma54_activat	1.89
PF08281	Sigma70_r4_2	1.89
PF00196	GerE	1.89
PF00072	Response_reg	1.89
PF12833	HTH_18	0.94
PF07366	SnoaL	0.94
PF04545	Sigma70_r4	0.94
PF07730	HisKA_3	0.94
PF00512	HisKA	0.94
PF02417	Chromate_transp	0.94
PF13185	GAF_2	0.94
PF07929	PRiA4_ORF3	0.94
PF00890	FAD_binding_2	0.94
PF02954	HTH_8	0.94
PF11154	DUF2934	0.94
PF13620	CarboxypepD_reg	0.94
PF01656	CbiA	0.94
PF13602	ADH_zinc_N_2	0.94
PF00440	TetR_N	0.94
PF13561	adh_short_C2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	3.77
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.83
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.89
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.38 %
Unclassified	root	N/A	39.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	35.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.04 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.94 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.94 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.09 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.94 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.94 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.09 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	3.77 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	3.77 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	2.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.94 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	3.77 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2.83 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	2.83 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.94 %
Hymenobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	0.94 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	3.77 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2.83 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	2.83 %
Hymenobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	0.94 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.94 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	3.77 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2.83 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	2.83 %
Hymenobacter nivis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter nivis	0.94 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.94 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.94 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101009474	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300002907\|JGI25613J43889_10025029	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300002917\|JGI25616J43925_10305223	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300005445\|Ga0070708_102118729	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005451\|Ga0066681_10480208	Not Available	765	Open in IMG/M
3300005467\|Ga0070706_100460126	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300005518\|Ga0070699_101320092	Not Available	662	Open in IMG/M
3300005538\|Ga0070731_10892804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	589	Open in IMG/M
3300005549\|Ga0070704_101359661	Not Available	651	Open in IMG/M
3300005556\|Ga0066707_10251087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1154	Open in IMG/M
3300005556\|Ga0066707_10415965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	874	Open in IMG/M
3300006034\|Ga0066656_10879346	Not Available	574	Open in IMG/M
3300006162\|Ga0075030_101185151	Not Available	600	Open in IMG/M
3300006163\|Ga0070715_10287480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	874	Open in IMG/M
3300006804\|Ga0079221_11280371	Not Available	575	Open in IMG/M
3300006845\|Ga0075421_101117727	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300006893\|Ga0073928_10903836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	605	Open in IMG/M
3300006893\|Ga0073928_11008265	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	567	Open in IMG/M
3300006914\|Ga0075436_100517901	Not Available	874	Open in IMG/M
3300007788\|Ga0099795_10651367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300009038\|Ga0099829_11780146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300009089\|Ga0099828_10885200	Not Available	798	Open in IMG/M
3300009137\|Ga0066709_100110215	Not Available	3405	Open in IMG/M
3300009162\|Ga0075423_11118815	Not Available	839	Open in IMG/M
3300010343\|Ga0074044_10275882	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	1108	Open in IMG/M
3300011269\|Ga0137392_11213881	Not Available	613	Open in IMG/M
3300011269\|Ga0137392_11560880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	519	Open in IMG/M
3300011444\|Ga0137463_1265889	Not Available	637	Open in IMG/M
3300012096\|Ga0137389_10255326	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1474	Open in IMG/M
3300012096\|Ga0137389_10772311	Not Available	825	Open in IMG/M
3300012096\|Ga0137389_11151858	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter nivis	664	Open in IMG/M
3300012189\|Ga0137388_10251828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1608	Open in IMG/M
3300012189\|Ga0137388_10309916	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300012205\|Ga0137362_10757270	Not Available	833	Open in IMG/M
3300012205\|Ga0137362_10768031	Not Available	826	Open in IMG/M
3300012205\|Ga0137362_10907439	Not Available	752	Open in IMG/M
3300012206\|Ga0137380_11190398	Not Available	647	Open in IMG/M
3300012207\|Ga0137381_10862642	Not Available	784	Open in IMG/M
3300012207\|Ga0137381_11386944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300012210\|Ga0137378_10118856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2438	Open in IMG/M
3300012350\|Ga0137372_10776766	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012359\|Ga0137385_10776463	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	797	Open in IMG/M
3300012361\|Ga0137360_11888169	Not Available	503	Open in IMG/M
3300012363\|Ga0137390_11010550	Not Available	783	Open in IMG/M
3300012582\|Ga0137358_10984801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300012683\|Ga0137398_10679881	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300012917\|Ga0137395_10902901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	638	Open in IMG/M
3300012923\|Ga0137359_10505328	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300012923\|Ga0137359_11478182	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300012924\|Ga0137413_11101675	Not Available	628	Open in IMG/M
3300012925\|Ga0137419_10591160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	891	Open in IMG/M
3300012929\|Ga0137404_10360920	Not Available	1274	Open in IMG/M
3300012929\|Ga0137404_11580948	Not Available	608	Open in IMG/M
3300012944\|Ga0137410_11297566	Not Available	629	Open in IMG/M
3300014501\|Ga0182024_10987546	Not Available	1005	Open in IMG/M
3300014969\|Ga0157376_12494019	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	557	Open in IMG/M
3300020034\|Ga0193753_10412953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300020579\|Ga0210407_10841586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300020580\|Ga0210403_10660033	Not Available	841	Open in IMG/M
3300020583\|Ga0210401_10315753	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300020583\|Ga0210401_11397479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300021170\|Ga0210400_10374871	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300021406\|Ga0210386_10595328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300021420\|Ga0210394_10467247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1110	Open in IMG/M
3300021420\|Ga0210394_10541106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1024	Open in IMG/M
3300021420\|Ga0210394_10734862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300021475\|Ga0210392_10277436	All Organisms → cellular organisms → Bacteria → Acidobacteria	1196	Open in IMG/M
3300021478\|Ga0210402_10993946	Not Available	766	Open in IMG/M
3300021559\|Ga0210409_11639746	Not Available	519	Open in IMG/M
3300022557\|Ga0212123_10952450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	501	Open in IMG/M
3300024288\|Ga0179589_10104350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	1162	Open in IMG/M
3300025910\|Ga0207684_10301199	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300025916\|Ga0207663_10330562	Not Available	1148	Open in IMG/M
3300026035\|Ga0207703_11786438	Not Available	591	Open in IMG/M
3300026508\|Ga0257161_1026380	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300026515\|Ga0257158_1096313	Not Available	582	Open in IMG/M
3300026557\|Ga0179587_10499415	Not Available	798	Open in IMG/M
3300026557\|Ga0179587_10710134	Not Available	662	Open in IMG/M
3300026557\|Ga0179587_10955680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300027370\|Ga0209010_1032585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300027535\|Ga0209734_1013578	Not Available	1477	Open in IMG/M
3300027535\|Ga0209734_1053083	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300027565\|Ga0209219_1025645	Not Available	1457	Open in IMG/M
3300027591\|Ga0209733_1084750	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300027729\|Ga0209248_10212705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300027875\|Ga0209283_10189198	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300027895\|Ga0209624_11138722	Not Available	501	Open in IMG/M
3300027908\|Ga0209006_11312618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300027911\|Ga0209698_10877044	Not Available	674	Open in IMG/M
3300029999\|Ga0311339_11181516	Not Available	702	Open in IMG/M
3300030524\|Ga0311357_11477121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300031057\|Ga0170834_103454923	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300031231\|Ga0170824_102371031	Not Available	1103	Open in IMG/M
3300031231\|Ga0170824_108624189	Not Available	505	Open in IMG/M
3300031708\|Ga0310686_106793621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4478	Open in IMG/M
3300031715\|Ga0307476_10418188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	991	Open in IMG/M
3300031753\|Ga0307477_10243150	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300031754\|Ga0307475_10680687	Not Available	821	Open in IMG/M
3300031754\|Ga0307475_11214420	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031962\|Ga0307479_10008240	All Organisms → cellular organisms → Bacteria	9625	Open in IMG/M
3300031962\|Ga0307479_10295495	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300031962\|Ga0307479_10808352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	913	Open in IMG/M
3300031962\|Ga0307479_11124870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300031962\|Ga0307479_11861034	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300032180\|Ga0307471_103126884	Not Available	587	Open in IMG/M
3300032180\|Ga0307471_103860819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.68%
Aquatic	Environmental → Aquatic	6.60%
Plants	Host-Associated → Plants	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.77%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.83%
Sediment	Environmental → Aquatic → Sediment	2.83%
Peat	Environmental → Terrestrial → Peat	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.75%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1010094742	3300002245	Forest Soil	DTGRSIVELIEVISIDRNGEAVLAEIMSQGAQCIAGDVYTKHLLRNLRSELKRSRMEGKQDGGGNH*
JGI25613J43889_100250293	3300002907	Grasslands Soil	AVLAEIMSQGAEFIAGDVYTKHLLRKMRSELKRNRTKGKEDAGGNH*
JGI25616J43925_103052231	3300002917	Grasslands Soil	IMGQGAEFIAGDVYTRYLLRNLRSKLKRSRMKGKEDSGDNH*
Ga0070708_1021187291	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GEAVLAEIMSQGGEFIASDVYTKHLLRNLRRELKRMRIKGKQDGRG*
Ga0066681_104802082	3300005451	Soil	LIEVTSIDRNGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS*
Ga0070706_1004601263	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DRNGEAVLAEIMSQGVEFIASDVYTKHLLRNLRSELKRSRIKEKQDGGGNQ*
Ga0070699_1013200921	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTSIDRNGEEALSEIMSHGGEFVASDVYTKHLLQNLRSELERSRLKEKQDDGGNRS*
Ga0070731_108928041	3300005538	Surface Soil	IDRKGEAALAEIMNQGAEFISGDVYTKHLLQNLRSEMTRARMKDLRGTER*
Ga0070704_1013596611	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELKRSRVKEKQDDGGNRS*
Ga0066707_102510873	3300005556	Soil	KFIASDVYTKHLLRNLRSELKRSRVKGKQDGGGNH*
Ga0066707_104159652	3300005556	Soil	KFIASDVYTKHLLRNLRSELKRSRMKGKQDGGGNH*
Ga0066656_108793462	3300006034	Soil	GEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS*
Ga0075030_1011851512	3300006162	Watersheds	SIDHDGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDHGGNRS*
Ga0070715_102874802	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	EVRPAGDRRRRIVELIEVTSIDRNGEAVRAEIMSQGVEFIASDVYTKHLLRNLRSELKRSRMKGKQDDGGNH*
Ga0079221_112803711	3300006804	Agricultural Soil	NGEAVLAELMRQGVDFIASDVYTKHVLQNLRSELEPSCVDKKQKSESNRS*
Ga0075421_1011177271	3300006845	Populus Rhizosphere	GEFVASDVYTKHLLQNLRSELERSRVKEKQDDRSNRS*
Ga0073928_109038361	3300006893	Iron-Sulfur Acid Spring	NGEAVLAEIMSHDVEFIVSDVYMKHLLQNLRSELELSRMKEKQDGGANQS*
Ga0073928_110082652	3300006893	Iron-Sulfur Acid Spring	RSGEAVLVELMSHGVKFIASDVYTKHLLRNLRSELKRSRMKGKQDDNGNH*
Ga0075436_1005179011	3300006914	Populus Rhizosphere	MSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNPS*
Ga0099795_106513671	3300007788	Vadose Zone Soil	EFIASDVYTKHLLQNLRRDLEQSRVKQDGGGNQP*
Ga0099829_117801461	3300009038	Vadose Zone Soil	LIEVTSIDRHGEEALSEIMSHGGDFIASDVYTKHLLQNLRSELERSRVKEKRDDGGNRS*
Ga0099828_108852002	3300009089	Vadose Zone Soil	IVELIDVTFVDRNGEAVLAEIMSHGAEFIARDVYTKHLLRTLRSELQRSRKDGKRK*
Ga0066709_1001102152	3300009137	Grasslands Soil	GDTRRRIVELIEMTSIDGNGEAVLAQIMSQGAEFIASDVYTKHLLRNMLGELKRSRMKEKQDGGGNH*
Ga0075423_111188152	3300009162	Populus Rhizosphere	VEVTSIDRNGEAVLAELMRQGVDFIASDVYTKHVLQNLRSELEPSRVDKKQKSESNR*
Ga0074044_102758821	3300010343	Bog Forest Soil	RNGEAVLAEMMSQGAEFISGDVYTEHLLRKLRRELKRRLEKAKQHGGGTKS*
Ga0137392_112138812	3300011269	Vadose Zone Soil	VTFFDRRGEIVLMEIMTQEAECVAIDVYTKHLLENLRSKFKRSRVKKKAWQWR*
Ga0137392_115608802	3300011269	Vadose Zone Soil	SIDRNGEAVLAEIMSHGTEFISGDVYTEHLLRKLRHELKQSRMKEKQAGGNSQ*
Ga0137463_12658892	3300011444	Soil	LSEIMSHGGEFVVSDVYTKHLLQNLRSELERSRVKEKQDDGGNRS*
Ga0137389_102553261	3300012096	Vadose Zone Soil	AEFIAGDVYTKHLLRNLRSELKRSRMKGKQDSGGNH*
Ga0137389_107723112	3300012096	Vadose Zone Soil	NGEEALSEIMSHGAEFIASDVYTKHLLQNLRSEWERSRVKEKQGDGGNRS*
Ga0137389_111518581	3300012096	Vadose Zone Soil	NGEEALSEIMSHGAEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS*
Ga0137388_102518282	3300012189	Vadose Zone Soil	AVLAEIMSQGVKFIASDVYTKHLLRNLRSELKRSRMKGKQDGGGDH*
Ga0137388_103099163	3300012189	Vadose Zone Soil	TEIMSQGAEFIASDVYTRHLLGNLRSELKRSCEEGKEDDSGNDRANF*
Ga0137362_107572701	3300012205	Vadose Zone Soil	IMTQGAEFVASDVYTKHLLRNLRSEMKHRRMKGKQDDGETD*
Ga0137362_107680312	3300012205	Vadose Zone Soil	ELIEVTSIDRTGEAVLAEIMTQGAEFVASDVYTKHLLRNLRSEMKHSRMKGKQDDGDTD*
Ga0137362_109074392	3300012205	Vadose Zone Soil	TSIDHNGEEALSEIMSHGAEFIASDVYTKHLLQNLRSELERSGVKEKQDDGGNRS*
Ga0137380_111903982	3300012206	Vadose Zone Soil	SEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRP*
Ga0137381_108626421	3300012207	Vadose Zone Soil	EEALSEIMTHGGEFIASDVYTKHLLQNLRRDLEQSRVKQDDGGNQP*
Ga0137381_113869441	3300012207	Vadose Zone Soil	VTSIDGNGEEALSEVMSHGGEFIASDVYTKHLLQTLRSELERSGVKEKQDDGGNRS*
Ga0137378_101188561	3300012210	Vadose Zone Soil	ARRCIIDLTEVTFIDRNGEAVLSEIMSEGAEFVASDVYIKHLLRNLRSELKRSHMKEK*
Ga0137372_107767661	3300012350	Vadose Zone Soil	IMSQGAEFIAGDVYTKHLLRNLRSELKRRRMKGKQGDEGNE*
Ga0137385_107764632	3300012359	Vadose Zone Soil	GEAVLAEMMSEGVNFIASDVYTKHLLRNLRSELKRSHMKGKKDGGGDH*
Ga0137360_118881692	3300012361	Vadose Zone Soil	SIDRNGEAVLAEIMSHGADFISGDVYTEHLLRKLRHELKQSRMKEKQAGGSSQ*
Ga0137390_110105501	3300012363	Vadose Zone Soil	SHGGEFIASDVYTKHLLQNLRGDLEQSRVKQDDGGNQP*
Ga0137358_109848011	3300012582	Vadose Zone Soil	GEEALSEIMSHGGEFIASDVYTKHLLQNLRRDLEQSRVKQDDGGNQP*
Ga0137398_106798811	3300012683	Vadose Zone Soil	LAEIMSQGAELVASDVYTKHLLRNLRSESKRTRMKRKQDGGGNHG*
Ga0137395_109029012	3300012917	Vadose Zone Soil	MGEAVLAEIMSQGVKFIASDVYTKHLLRNLRSELKRSRMKGKQDRGGNH*
Ga0137359_105053283	3300012923	Vadose Zone Soil	RRCIVELIDVTFIDQTGEAVLAEIMSQGAELVASDVYTKHLLRNLRSESKRTRMKRKQDGGGNHG*
Ga0137359_114781821	3300012923	Vadose Zone Soil	NGEEVLSEIMSHGGEFVASDVYTKHLLQNLRSELKRSRIKGKQDGRGKH*
Ga0137413_111016751	3300012924	Vadose Zone Soil	VTSIDRNGEAVLAEIMSHGVEFIASDVYTKHLLQDLRSELDQSRMKEKQDSGGN
Ga0137419_105911601	3300012925	Vadose Zone Soil	IVDLIEVTSIDRNGEAILAEIMSQGAEFISGDVYTEHLLRNLRHKVKRSRVKRKQDADSDH*
Ga0137404_103609201	3300012929	Vadose Zone Soil	AVLGEIMSQGGEFIASDVYTKHLLRNLRRELKRSRIQGKQDGRGKH*
Ga0137404_115809482	3300012929	Vadose Zone Soil	LIAVTNIDRNGEAVLAEIMSQGVEFIASDVYTKHLLRNLRSDLKRSRMKGKQDDAGNP*
Ga0137410_112975661	3300012944	Vadose Zone Soil	DRNGEEALSEIMSHGAEFIARDVYTKHLLQNLRSELERSRVKEKQDGGCNQS*
Ga0182024_109875461	3300014501	Permafrost	IMSQGVEFVASDVYTKHLLQNLRSELERSRMKEKQEGCAD*
Ga0157376_124940192	3300014969	Miscanthus Rhizosphere	EFIASDVYTKHLLQNLRSELERSRINEKQDSHDKY*
Ga0193753_104129532	3300020034	Soil	VTSIDQNGEAILAEIMSHDAEFISGDVYTEHLLRNLRNKLKRSRVKRKQDDGSDH
Ga0210407_108415861	3300020579	Soil	TSIDRNGEAVLAEIMSHGAEFIAGDVYTKHLLRNMRSDLKRRRTKGKDGGGKH
Ga0210403_106600332	3300020580	Soil	AEFIASDVYTKHLLQNLRAELERSRVKEKQGDGGNRS
Ga0210401_103157532	3300020583	Soil	TAIDRKGEDVLSEIMSHGVEFIASDVYTKHLLQNLRGELERSRVKEKQGDGGNRS
Ga0210401_113974791	3300020583	Soil	VEVISIDREGEAVLAEMMSQGAEFVATDVYTKHLLRKLRGELKRTRTKGKQGAGGKHR
Ga0210400_103748711	3300021170	Soil	TSIDHDGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS
Ga0210386_105953282	3300021406	Soil	IDRKGEAVLAEMMSQGAEFIATDVYTKHLLWKLRGDLKRTGTKGKQGGKHR
Ga0210394_104672471	3300021420	Soil	IDVTAIDRNGEAALAEIMNQGVEFIASDVYTKHLLQNLRSELERSRMKGKQDGGGD
Ga0210394_105411061	3300021420	Soil	GENRAALHTRRRIVELTEVTAIDRDGEAVLMEIMSQGAELIAGDVYTNNLLRNMRSEWKRSRMKEKQDEGGNH
Ga0210394_107348622	3300021420	Soil	IVELIAVTSIDRDGEAVLAEIMSHGGEFIPGDVYTEHLLKNLRTELEQSRMEEKQNGGDNQS
Ga0210392_102774361	3300021475	Soil	EVISIDRNGEAVLAEIMSQGAEFIASDVYTKHLLRKLRSELRRSGMKRNQDEGGNHW
Ga0210402_109939461	3300021478	Soil	ELVEVTAIDRKGEDVLSEIMSHGAEFIASDVYTKHLLQNLRGELERSRAKEKQGDGGNRL
Ga0210409_116397461	3300021559	Soil	VTSIDGNGEAVLAEIMSQGGEFIASDVYTKHLLRNLRRELKPSRTKGNEDDRGKH
Ga0212123_109524501	3300022557	Iron-Sulfur Acid Spring	IEVSSIDRNGEAVLAEIMSQGVEFIASDVYTKHLLQNLRGDLERSRMKEQQDDGGN
Ga0179589_101043502	3300024288	Vadose Zone Soil	NGEAVLAEIMSHGADFISGDVYTEHLLRKLRHELKQSRMKEKQAGGSSQ
Ga0207684_103011993	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LMRQGVDFIASDVYTKHVLQNLRSELEPSRVDKKQKSESNRS
Ga0207663_103305622	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	NHGGQFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS
Ga0207703_117864381	3300026035	Switchgrass Rhizosphere	SEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS
Ga0257161_10263803	3300026508	Soil	TRRCIVELIDVTFIDQTGEAVLTEIMSHGAELVASDVYTKHLLQNLRSESKRTRMKRKQDGGGNHG
Ga0257158_10963132	3300026515	Soil	VLAEIMSQGAEFIAGDVYTKHLLRQMRSELKRNRTKGKEEGGGNH
Ga0179587_104994152	3300026557	Vadose Zone Soil	LSEVTSIDRNGEAGLAEIMSQGVEFASDVYTNIFYGTRLKRSRMKEKEDGGGNH
Ga0179587_107101341	3300026557	Vadose Zone Soil	EAVLAEIMTQGAEFVASDVYTKHLLRNLRSEMKHRRMKGKQDDGETD
Ga0179587_109556801	3300026557	Vadose Zone Soil	ELTEVTSIDRDGEEALSEIMSHGGEFIASDVYTKHLLQNLRNELERSRVKEKQDDGGNRS
Ga0209010_10325851	3300027370	Forest Soil	RQAGDTRKRILELIEVTAIDRNGEAALAEIMNQGVEFIASDVYTKHLLQNLRSELERSRMKGKQDGGGD
Ga0209734_10135782	3300027535	Forest Soil	VELIEVTSIDRTGEAVLAEIMSHGGEFIASDVYTKHLLQNLRSELKRSRVKEKQDDGGNR
Ga0209734_10530832	3300027535	Forest Soil	EIMSQGAELVASDVYTKHLLQNLRSESKRTRMKRKQDGGGNHG
Ga0209219_10256452	3300027565	Forest Soil	HGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGHRS
Ga0209733_10847502	3300027591	Forest Soil	SQGAELVASDVYTKHLLQNLRSESKRTRMKRKQDGGDNHG
Ga0209248_102127051	3300027729	Bog Forest Soil	RWREARQAGDTRKRILELIEVTAIDRNGEAALAEIMNQGVEFIASDVYIKHLLQNLRSELERSRMKGKQDGGGD
Ga0209283_101891981	3300027875	Vadose Zone Soil	DSNGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS
Ga0209624_111387222	3300027895	Forest Soil	NGEAVLAELMSQGVEFVASDVYTKHLLQNLRSELERLRMKEKQEGGGN
Ga0209006_113126182	3300027908	Forest Soil	IEVTSIDRQGEAVLTEIMSQGAEFVASDVYTKHLLRNLRSELKRSRLKGKPDGSGNH
Ga0209698_108770442	3300027911	Watersheds	SIDHDGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQDHGGNRS
Ga0311339_111815162	3300029999	Palsa	GVEFVASDVYTKHLLQNLRSELERLHMKEKHGGDGN
Ga0311357_114771211	3300030524	Palsa	GEAVLAEIMSHGAEFIASDVYTKHLLQNLRSELERGRLKEKQDDGGHRS
Ga0170834_1034549231	3300031057	Forest Soil	AVLAEIMSRGAELVASDVYIKHLLRNLRRELKRTRTKGKQDGGGNHG
Ga0170824_1023710311	3300031231	Forest Soil	IDRNGEEVLLEIMNHGGEFVASDVYTKHLLLNLRSELERTRVKEEQDEGGNRS
Ga0170824_1086241892	3300031231	Forest Soil	EGVLAEIMSRGVEFIASDVYTKHLLQNLRSELERSRMKEKQDGDGE
Ga0310686_1067936213	3300031708	Soil	VGDVYALDRKGEEVLAEIMSRGVEFISGDVYTEHLLEELRQELKRSRVKEKQDGSSSH
Ga0307476_104181882	3300031715	Hardwood Forest Soil	TGDTRKTIIDLIEVTSIDRNGEAALAEMMSQGAEFISGDVYVEHLLRKLRSELEQSRMKEKQDDGSNH
Ga0307477_102431502	3300031753	Hardwood Forest Soil	AIDRNGEDVLSEIMNHGAEFIASDVYTKHLLQNLRAELERSRVKEKQGDGGNRS
Ga0307475_106806872	3300031754	Hardwood Forest Soil	LIEVTSIDRNGEEALSEIMSHGGEFIASDVYTKHLLQNLRSELERSRVKEKQGDGGNRS
Ga0307475_112144201	3300031754	Hardwood Forest Soil	EVISIDRNGEDILSEIMSQGAEFISGDVYTEHLLRNLRHKMKRSRANRKQDDGSVH
Ga0307479_100082403	3300031962	Hardwood Forest Soil	VTSIDRKGEAVLAEMMSQRAEFIASDVYTNHLLRSLHSELKRSRRKGMQDDHGNH
Ga0307479_102954952	3300031962	Hardwood Forest Soil	ALSEIMSHGGEFVASDVYTKHLLQNLRSELERSRLKEKQDDGGNRS
Ga0307479_108083522	3300031962	Hardwood Forest Soil	MSQGVEFIAKDVYTKHLLRALRSELKRSRMKGKQDGGGNHG
Ga0307479_111248701	3300031962	Hardwood Forest Soil	EGEAVLAEMMSQGAEFVATDVYTKHLLRKLRGELKRTRTKGKQGAGGKHR
Ga0307479_118610342	3300031962	Hardwood Forest Soil	EAVLAEIMSQGAEFIAGDVYTKHLLRNLRSELKRRRTKGKQDAGGNH
Ga0307471_1031268841	3300032180	Hardwood Forest Soil	GEFIASDVYTKHLLQNLRSELERSRMKGKKDRSRD
Ga0307471_1038608192	3300032180	Hardwood Forest Soil	GGEFIASDVYTKHLLQNLRSELERSRVKEKQDDGGNRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094470

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences