Metagenome / Metatranscriptome Family F094463

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094463
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	MRTKTNCKAGKLSANHNETLVRDNGKNLKVKTALRAGKKAAS
Number of Associated Samples	55
Number of Associated Scaffolds	74

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.21 %
% of genes near scaffold ends (potentially truncated)	35.85 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.774 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.245 % of family members)
Environment Ontology (ENVO)	Unclassified (17.925 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.14% β-sheet: 0.00% Coil/Unstructured: 62.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 74 Family Scaffolds
PF13424	TPR_12	32.43
PF00005	ABC_tran	6.76
PF03412	Peptidase_C39	2.70
PF13432	TPR_16	2.70
PF00072	Response_reg	1.35
PF01011	PQQ	1.35
PF13570	PQQ_3	1.35
PF13437	HlyD_3	1.35
PF00763	THF_DHG_CYH	1.35
PF05345	He_PIG	1.35

COG ID	Name	Functional Category	% Frequency in 74 Family Scaffolds
COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	Coenzyme transport and metabolism [H]	1.35

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
All Organisms	root	All Organisms	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
cellular organisms	root	All Organisms → cellular organisms	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.66 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Bradymonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales	2.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Bradymonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae	2.83 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
unclassified Bradymonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae	2.83 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Bradymonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	2.83 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	1.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Bradymonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	2.83 %
Archangium violaceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum	1.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.92 %
Bradymonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	2.83 %
Archangium violaceum Cb vi76	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum → Archangium violaceum Cb vi76	1.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004120\|Ga0058901_1082912	Not Available	652	Open in IMG/M
3300004134\|Ga0058906_1321766	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300004139\|Ga0058897_11145658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300004157\|Ga0062590_102734332	Not Available	526	Open in IMG/M
3300005174\|Ga0066680_10829783	Not Available	554	Open in IMG/M
3300005336\|Ga0070680_100430337	Not Available	1126	Open in IMG/M
3300005439\|Ga0070711_100086921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2243	Open in IMG/M
3300005445\|Ga0070708_102263355	Not Available	501	Open in IMG/M
3300005458\|Ga0070681_10073795	All Organisms → cellular organisms → Bacteria → Acidobacteria	3374	Open in IMG/M
3300005458\|Ga0070681_10073795	All Organisms → cellular organisms → Bacteria → Acidobacteria	3374	Open in IMG/M
3300005536\|Ga0070697_100250034	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300005536\|Ga0070697_100672285	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005536\|Ga0070697_100672285	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005536\|Ga0070697_100672285	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005537\|Ga0070730_10027965	All Organisms → cellular organisms → Bacteria	4287	Open in IMG/M
3300005537\|Ga0070730_10027965	All Organisms → cellular organisms → Bacteria	4287	Open in IMG/M
3300005538\|Ga0070731_10004755	All Organisms → cellular organisms → Bacteria → Acidobacteria	11494	Open in IMG/M
3300005538\|Ga0070731_10004755	All Organisms → cellular organisms → Bacteria → Acidobacteria	11494	Open in IMG/M
3300005538\|Ga0070731_10244362	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005538\|Ga0070731_10244362	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005538\|Ga0070731_10244362	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005586\|Ga0066691_10326443	Not Available	907	Open in IMG/M
3300005598\|Ga0066706_10166718	Not Available	1670	Open in IMG/M
3300006163\|Ga0070715_10352751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300006237\|Ga0097621_101338912	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300006358\|Ga0068871_100764555	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300006358\|Ga0068871_100764555	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300006903\|Ga0075426_11205450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300009012\|Ga0066710_100180383	Not Available	2982	Open in IMG/M
3300009012\|Ga0066710_100180383	Not Available	2982	Open in IMG/M
3300009012\|Ga0066710_100180383	Not Available	2982	Open in IMG/M
3300009038\|Ga0099829_11068624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300009038\|Ga0099829_11068624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300009089\|Ga0099828_10594350	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300009143\|Ga0099792_10956384	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300009176\|Ga0105242_12928160	Not Available	528	Open in IMG/M
3300009545\|Ga0105237_11435222	Not Available	697	Open in IMG/M
3300010401\|Ga0134121_11215030	Not Available	754	Open in IMG/M
3300011120\|Ga0150983_13161809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300011120\|Ga0150983_14052910	Not Available	541	Open in IMG/M
3300011120\|Ga0150983_15362337	Not Available	581	Open in IMG/M
3300011120\|Ga0150983_15362337	Not Available	581	Open in IMG/M
3300011120\|Ga0150983_15388249	Not Available	899	Open in IMG/M
3300011120\|Ga0150983_15388249	Not Available	899	Open in IMG/M
3300011120\|Ga0150983_16567274	Not Available	525	Open in IMG/M
3300011120\|Ga0150983_16567274	Not Available	525	Open in IMG/M
3300011271\|Ga0137393_11030502	Not Available	700	Open in IMG/M
3300012363\|Ga0137390_11322118	Not Available	666	Open in IMG/M
3300012469\|Ga0150984_115275214	Not Available	582	Open in IMG/M
3300012929\|Ga0137404_10661707	Not Available	942	Open in IMG/M
3300012984\|Ga0164309_10726855	Not Available	791	Open in IMG/M
3300013297\|Ga0157378_10985062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	877	Open in IMG/M
3300015245\|Ga0137409_11504035	Not Available	522	Open in IMG/M
3300015371\|Ga0132258_12739315	Not Available	1229	Open in IMG/M
3300015371\|Ga0132258_12739315	Not Available	1229	Open in IMG/M
3300015371\|Ga0132258_12739315	Not Available	1229	Open in IMG/M
3300022504\|Ga0242642_1037562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300022506\|Ga0242648_1060448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300022507\|Ga0222729_1073883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300022508\|Ga0222728_1079441	Not Available	594	Open in IMG/M
3300022510\|Ga0242652_1054150	Not Available	513	Open in IMG/M
3300022531\|Ga0242660_1067492	Not Available	817	Open in IMG/M
3300022531\|Ga0242660_1067492	Not Available	817	Open in IMG/M
3300022531\|Ga0242660_1075050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300022531\|Ga0242660_1075050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300022531\|Ga0242660_1220951	Not Available	529	Open in IMG/M
3300022531\|Ga0242660_1229528	Not Available	521	Open in IMG/M
3300022531\|Ga0242660_1229528	Not Available	521	Open in IMG/M
3300022531\|Ga0242660_1229528	Not Available	521	Open in IMG/M
3300022532\|Ga0242655_10191157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300022533\|Ga0242662_10071701	Not Available	938	Open in IMG/M
3300022533\|Ga0242662_10071701	Not Available	938	Open in IMG/M
3300022533\|Ga0242662_10155950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300022533\|Ga0242662_10211700	Not Available	614	Open in IMG/M
3300022533\|Ga0242662_10277802	Not Available	552	Open in IMG/M
3300022533\|Ga0242662_10277802	Not Available	552	Open in IMG/M
3300022533\|Ga0242662_10277802	Not Available	552	Open in IMG/M
3300022717\|Ga0242661_1034282	Not Available	890	Open in IMG/M
3300022717\|Ga0242661_1069587	Not Available	691	Open in IMG/M
3300022717\|Ga0242661_1069587	Not Available	691	Open in IMG/M
3300022717\|Ga0242661_1069587	Not Available	691	Open in IMG/M
3300022717\|Ga0242661_1152259	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300022722\|Ga0242657_1109478	Not Available	690	Open in IMG/M
3300022724\|Ga0242665_10194769	Not Available	665	Open in IMG/M
3300022724\|Ga0242665_10209755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300022724\|Ga0242665_10291669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300022724\|Ga0242665_10291669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300025906\|Ga0207699_10510310	Not Available	869	Open in IMG/M
3300025912\|Ga0207707_10200314	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300025912\|Ga0207707_10200314	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300025934\|Ga0207686_11799948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	507	Open in IMG/M
3300027857\|Ga0209166_10040254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum → Archangium violaceum Cb vi76	2785	Open in IMG/M
3300027857\|Ga0209166_10040254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum → Archangium violaceum Cb vi76	2785	Open in IMG/M
3300027869\|Ga0209579_10005124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	8977	Open in IMG/M
3300027869\|Ga0209579_10300547	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	865	Open in IMG/M
3300027869\|Ga0209579_10300547	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	865	Open in IMG/M
3300027869\|Ga0209579_10300547	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → unclassified Bradymonadaceae → Bradymonadaceae bacterium	865	Open in IMG/M
3300027869\|Ga0209579_10640470	Not Available	576	Open in IMG/M
3300028381\|Ga0268264_11343232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300031231\|Ga0170824_124082358	Not Available	525	Open in IMG/M
3300031231\|Ga0170824_124082358	Not Available	525	Open in IMG/M
3300031469\|Ga0170819_10647998	Not Available	525	Open in IMG/M
3300032180\|Ga0307471_102068662	Not Available	715	Open in IMG/M
3300032180\|Ga0307471_102068662	Not Available	715	Open in IMG/M
3300032180\|Ga0307471_102323849	Not Available	677	Open in IMG/M
3300032205\|Ga0307472_101615496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.74%
Host-Associated	Host-Associated	12.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.74%
Plants	Host-Associated → Plants	12.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%
Roots	Host-Associated → Plants → Roots	2.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.09%
Loam	Environmental → Terrestrial → Soil → Loam	22.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.25%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	13.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004134	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF248 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058901_10829122	3300004120	Forest Soil	KMRTKTNCKAGSWGKNHSETMLRDARKSLKVRTAVRAGAIKR*
Ga0058906_13217661	3300004134	Forest Soil	KMRTKSNVKAGGRSINHNETMVRDNARSLKVRTNVRAGKRIA*
Ga0058897_111456582	3300004139	Forest Soil	MNTKTHCKAGKLTCNHSETLVRDNGKSLKVKTALRAGKKAA*
Ga0062590_1027343321	3300004157	Soil	MRTKTSCKAGKSAWNNHNETLVRATRKNLKVRTAVRAGAVKR*
Ga0066680_108297831	3300005174	Soil	MKTKTNCKAGKLSANHSETLVRDNGKSLKVKTAPWAGADTRIS*
Ga0070680_1004303371	3300005336	Corn Rhizosphere	ERRPIKMRTKTNCKAGGTSLNHNETLVRDNGKNLKVKTALRAGKKAY*
Ga0070711_1000869212	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKTNCKAGRMAANHSETLVRDARKNLKVRTAVRAGAIKR*
Ga0070708_1022633552	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKTNCKAGNLAANHSETLVRATRKNLKVRTAVRAGAIKR*
Ga0070681_100737952	3300005458	Corn Rhizosphere	MRTKTNCKAGGTSLNHNETLVRDNGKNLKVKTALRAGKKAY*
Ga0070681_100737954	3300005458	Corn Rhizosphere	MRTKTNCKAGKLSANHNETLVRDNGKNLKVKTALRAGKKAAS*
Ga0070697_1002500342	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKSNVKAGGRSVNHNETLVRDNGKNLKVRTNVRAGKKAQ*
Ga0070697_1006722852	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKTKTNCKAGYNDTDTKLATNHSETLVRDNGKRLKVKTALRAGNKSV*
Ga0070697_1006722853	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKTNCKAGYNDSNTKLAANHNETLVRDNGKRLKVKTALRAGNKSV*
Ga0070697_1006722854	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKTNCKAGHNDGNDKLSANHNETLVRDNGKRLKVKTALRAGAAKRNS*
Ga0070730_100279652	3300005537	Surface Soil	MRTKTNFKAGKLAANHSETMVRDTRKNLKVRTAVRAGAVKR*
Ga0070730_100279653	3300005537	Surface Soil	MRTKTNCKAGRLAANHSETMVRDTRKNLKVRTAVRAGAVKR*
Ga0070731_1000475510	3300005538	Surface Soil	MRTKTNCKAGKISSNHSETLVRDNGKNLKVKTALRAGKRAT*
Ga0070731_100047559	3300005538	Surface Soil	MKTQTTIKAGLKGTTFQHNETLVRDNGKNLKVKTAVRAGKKGR*
Ga0070731_102443622	3300005538	Surface Soil	MKTKTNCKAGAYDVRLSANHSETLVRDNGKNLKIKTALRAGKKAK*
Ga0070731_102443623	3300005538	Surface Soil	VWIEMKTKTNCKAGKVVVNHSETILRDNGTSLKIKTALRAGKKAQ*
Ga0070731_102443624	3300005538	Surface Soil	MKTKTNFKAGRVAYNHSETLVRDNDKNLKIKTALRAGKKSA*
Ga0066691_103264433	3300005586	Soil	MRTKSNVKAGGTSLNHNETLVRDNGKNLKVRTNVRAGKKAQ*
Ga0066706_101667181	3300005598	Soil	MRTKTNCKAGGESLNHSETLVRDNGKSLKVKTALWAGAPTRIS*
Ga0070715_103527511	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	CYYAGQEDTQMRTKTTCKAGKSAWNNHSETLVRETRKNLKVRTAVRAGALKR*
Ga0097621_1013389122	3300006237	Miscanthus Rhizosphere	MKTKTNCKAGGPYANHNETLVRDNGKNLKVKTALRAGKKAESR*
Ga0068871_1007645552	3300006358	Miscanthus Rhizosphere	MSTKTNCKAGGDKISANHNETLVRDNGKNLKVKTALRAGKKAAS*
Ga0068871_1007645553	3300006358	Miscanthus Rhizosphere	MKTKTNCKAGGPYANHNETLVRDNGKNLKVKTALRAGKKIN*
Ga0075426_112054502	3300006903	Populus Rhizosphere	LTKTNCKAGRLAANHSETMLRGTRKNLKVRTAVRAGAVKR*
Ga0066710_1001803832	3300009012	Grasslands Soil	MRTKTNCKAGKVIANHSETLVRDNGKSLKVKTALWAGAPTRIS
Ga0066710_1001803833	3300009012	Grasslands Soil	MRTKTNCKAGSMTYNHSETLVRDNGKSLKVKTALRAGYKKVN
Ga0066710_1001803834	3300009012	Grasslands Soil	MKTKTNFKAGGTSLNHSETLVRDNGKRLKVKTALRAGYKSV
Ga0099829_110686241	3300009038	Vadose Zone Soil	KAGGKDLNHSETLVRDNGKSLKVKTALRAGKKATS*
Ga0099829_110686242	3300009038	Vadose Zone Soil	MKTKTNCKAGGIRLTNHSETLVRDNGKSLKVKTALWAGAAKRIS*
Ga0099828_105943502	3300009089	Vadose Zone Soil	MRTKSNVKAGGTSLNHNETLVRDNGKNLKVRTNVRGGKKAQ*
Ga0099792_109563842	3300009143	Vadose Zone Soil	MKTRTNCKAGASYDVRLAANHCETLLRDSSKSLKIKTA
Ga0105242_129281601	3300009176	Miscanthus Rhizosphere	IKMRTKTNCKAGGKSLNHNETLVRDNGKNLKVKTALRAGKKAESR*
Ga0105237_114352222	3300009545	Corn Rhizosphere	MRTKTNCKAGGVSLNHNETLVRDNGKSLKVKTALRAGKKAAS*
Ga0134121_112150302	3300010401	Terrestrial Soil	MRTKTNCKAGLVDKLATNHNETLVRDNGKKLKVKTALRAGKKAAS*
Ga0150983_131618091	3300011120	Forest Soil	KTKTNCKAGGMPDNHNETLVRDNGKRLTVKTALRAGKKAVS*
Ga0150983_140529101	3300011120	Forest Soil	MRTKTNCKAGRMSANHSETMVRDTRKNLRVRTAVRAGAIKR*
Ga0150983_153623371	3300011120	Forest Soil	KTMKTRTNCKAGIRLSGNHNETLVRDSSKNLKIKTALRAGKKAER*
Ga0150983_153623373	3300011120	Forest Soil	MRTKTSCKSGKVTANHNEKLVRDCGKSLKVQTALRAGKKAA*
Ga0150983_153882491	3300011120	Forest Soil	KMRTKTNCKAGKMAGNHSETMVRDTRKNLKVRTAVRAGAIKR*
Ga0150983_153882492	3300011120	Forest Soil	MRTKTNCKAGSWGKNHSETMLRDARKSLKVRTAVRAGAIKR*
Ga0150983_165672741	3300011120	Forest Soil	MRTKSNVKAGGAWQNHNETLVRDIAKNLKVRTNVRAGKKAQ*
Ga0150983_165672742	3300011120	Forest Soil	KMRTKSNVKAGGINLGNHNETLVRDNAKNLKVRTNVRAGNKRAAQ*
Ga0137393_110305022	3300011271	Vadose Zone Soil	QMRTKTNCKAGRLAANHSETLVRATRKNLKVRTAVRAGAIKR*
Ga0137390_113221181	3300012363	Vadose Zone Soil	MRTKTNCKAGKLAANHSETLMRDTRKNLKVRTAVRAGAIKR*
Ga0150984_1152752141	3300012469	Avena Fatua Rhizosphere	TMRTKTNCKAGQDKIATNHNETLVRDNGKNLKVKTALRAGKKAAS*
Ga0137404_106617072	3300012929	Vadose Zone Soil	MKTKTNCKAGLITGSGPTGGKLIANHCETVLRDSGKSLKVKTALRAGKKAA*
Ga0164309_107268552	3300012984	Soil	TCKAGKSAWNNHSETLVRETRKNLKVRTAVRAGALKR*
Ga0157378_109850622	3300013297	Miscanthus Rhizosphere	MRTKTNCKAGGTSLNHNETLARDNGKNLKVKTALRAGKKAAS*
Ga0137409_115040352	3300015245	Vadose Zone Soil	MRTKSNLKAGKCVANHNETLVRDNGKNLKVRTNVRAGYKRA*
Ga0132258_127393152	3300015371	Arabidopsis Rhizosphere	MCGRRNREMRTKTNCKAGGKDLNHSETLVRDNGKRLKVKTALRAGKKAVA*
Ga0132258_127393153	3300015371	Arabidopsis Rhizosphere	MKTKTNCKAGGHNLNHSETLIRDNCKRLKVKTALRAGKKAVA*
Ga0132258_127393154	3300015371	Arabidopsis Rhizosphere	MKTKTNCKAGRLSANHNETLVRDNGKSLKVKTALWAANKAVD*
Ga0242642_10375622	3300022504	Soil	MRTKTNCKAGKLTANHSETMLRGTRKNLKVRTAVRAGAVKR
Ga0242648_10604481	3300022506	Soil	KMRTKTNCKAGKLTANHSETMLRGTRKNLKVRTAVRAGAVKR
Ga0222729_10738831	3300022507	Soil	EMKTKTNCKAGKLACNHSETLVRDNGKSLKVKTALRAGKKAA
Ga0222728_10794412	3300022508	Soil	MKMRTKTNCKAGRMSANHSETMVRDTRKNLRVRTAVRAGAIKR
Ga0242652_10541501	3300022510	Soil	KMRTKTNCKAGSWGKNHSETMLRDARKSLKVRTAVRAGAIKR
Ga0242660_10674922	3300022531	Soil	MRTKTNCKAGKLSANHSETMVRDTRKNLKVRTTVRAGAIKR
Ga0242660_10674923	3300022531	Soil	GGTKMRTKTNCKAGRLAANHSETMLRCTRKNLKVRTAVRAGAVKR
Ga0242660_10750501	3300022531	Soil	KTKTNCKAGGIPDNHNETLVRDNGKRLTVKTALRAGKKAVS
Ga0242660_10750502	3300022531	Soil	MNTKTHCKAGKLACNHSETLVRDNGKSLKVKTALRAGKKAA
Ga0242660_12209511	3300022531	Soil	KMTTKTNLKAGGASFNHNETLVRDNGKNLKVKSQVRAGWLKKVY
Ga0242660_12295281	3300022531	Soil	MKTKTNCKAGGQNLNHSETLVRDNGKNLKVKTALRAGKKAA
Ga0242660_12295282	3300022531	Soil	MKTKTNCKAGGKDLNHSETLVRDNGRNLKVKTALRAGKKAA
Ga0242660_12295283	3300022531	Soil	KTKTNCKAGAAAMNHSETLVRDNGKNLKVKTALRAGKKAA
Ga0242655_101911571	3300022532	Soil	KMRTKTNCKAGRRSANHSETMVRDTRKNLKVRTAVRAGAIKR
Ga0242662_100717012	3300022533	Soil	VKTKTNCQAGRLAGNHSETLVRDSGKNLKVKTALRAGKKAK
Ga0242662_100717013	3300022533	Soil	MKTKTNCKAGKLAVNHSETLVRDSGKNLKFKTALRAGKKAKNQNEL
Ga0242662_101559503	3300022533	Soil	TNCKAGRMAANHSETLVRDARKNLKVRTAVRAGAIKR
Ga0242662_102117001	3300022533	Soil	KTQTTIKAGLKGTTFQHNETLVRDNGKNLKVKTAVRAGKKGR
Ga0242662_102778021	3300022533	Soil	KTKTNCNAGRMGTSVQHNETLVRDSSKSLKVKTALRAGKKAKS
Ga0242662_102778022	3300022533	Soil	MRTKTNCKSGKITANHSETLLRDMHKSLKVKTALRAGYKRA
Ga0242662_102778023	3300022533	Soil	MRTKTNCKSGKISANHSETLLRDVRKSLTVKTALRAGKRAA
Ga0242661_10342823	3300022717	Soil	KTKTNCKVGKLAANHNETLVRDNGKSLRVKTALRAGKKAR
Ga0242661_10695871	3300022717	Soil	TTIKAALKGTTFQHNETLVRDNGKNLKVKTAVRAGKKADR
Ga0242661_10695872	3300022717	Soil	MKTKTNSKAGSRATGLQHNETLIRDCGRNLKVKTALRAGKKSR
Ga0242661_10695874	3300022717	Soil	MRTKTNCKAGKISSNHSETLVRDNGKNLKVKTALRAGKRAT
Ga0242661_11522592	3300022717	Soil	KMKTKSNVRAGGTSLNHSETLVRDNGKNLKVRTSVRAGKRSA
Ga0242657_11094782	3300022722	Soil	RTKTNCKAGSWGKNHSETMLRDARKSLKVRTAVRAGAIKR
Ga0242665_101947692	3300022724	Soil	MTTKTNLKAGGASFNHNETLVRDNGKNLKVKSQVRAGWLKKVY
Ga0242665_102097553	3300022724	Soil	KTKTNCKAGGMPDNHNETLVRDNGKRLTVKTALRAGKKAVS
Ga0242665_102916692	3300022724	Soil	MRTKTNCKAGKLASNHSETMVRDARKNLKVRTAVRAGAIKR
Ga0242665_102916693	3300022724	Soil	RTKTNCKAGKMAGNHSETMVRDTRKNLKVRTAVRAGAIKR
Ga0207699_105103101	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	NCKAGRMSANHSETMVRDTRKNLKVRTTVRAGAIKR
Ga0207707_102003143	3300025912	Corn Rhizosphere	MRTKTNCKAGGTSLNHNETLVRDNGKNLKVKTALRAGKKAY
Ga0207707_102003144	3300025912	Corn Rhizosphere	MRTKTNCKAGKLSANHNETLVRDNGKNLKVKTALRAGKKAAS
Ga0207686_117999482	3300025934	Miscanthus Rhizosphere	IKMRTKTNCKAGGKSLNHNETLVRDNGKNLKVKTALRAGKKAESR
Ga0209166_100402542	3300027857	Surface Soil	MRTKTNCKAGRLAANHSETMVRDTRKNLKVRTAVRAGAVKR
Ga0209166_100402543	3300027857	Surface Soil	MRTKTNFKAGKLAANHSETMVRDTRKNLKVRTAVRAGAVKR
Ga0209579_100051247	3300027869	Surface Soil	MKTQTTIKAGLKGTTFQHNETLVRDNGKNLKVKTAVRAGKKGR
Ga0209579_103005472	3300027869	Surface Soil	MKTKTNCKAGAYDVRLSANHSETLVRDNGKNLKIKTALRAGKKAK
Ga0209579_103005473	3300027869	Surface Soil	MKTKTNCKAGKVVVNHSETILRDNGTSLKIKTALRAGKKAQ
Ga0209579_103005474	3300027869	Surface Soil	MKTKTNFKAGRVAYNHSETLVRDNDKNLKIKTALRAGKKSA
Ga0209579_106404701	3300027869	Surface Soil	MKTKTNCKAGDGFRIAANHSETLLRDSGKNLKVKTALRAGKKAK
Ga0268264_113432321	3300028381	Switchgrass Rhizosphere	CGPERSPPKMRTKTNCKAGGNNLNHGETLVRDNSKSLKVKTALRAGKKSA
Ga0170824_1240823581	3300031231	Forest Soil	MRTTTNCKAGKGGGGVYNHNETLVRAARKNLKIRTAVRAGAIKR
Ga0170824_1240823582	3300031231	Forest Soil	QMRTKTTCKAGKPGWSNHSETLVRATHKNLKVRTAVRAGAVKK
Ga0170819_106479981	3300031469	Forest Soil	MRTTTNCKSGKGGGGVYNHNETLVRAARKNLKIRTAVRAGAIKR
Ga0307471_1020686621	3300032180	Hardwood Forest Soil	MRTKSNVKAGGINLGNHNETLVRDNAKNLKVRTNVRAGNKRAAQ
Ga0307471_1020686622	3300032180	Hardwood Forest Soil	MRTKSNVKAGGAWQNHNETLVRDIAKNLKVRTNVRAGKKAQ
Ga0307471_1023238491	3300032180	Hardwood Forest Soil	MKTKTNCKAGDGFRIAANHSETLVRDSGSRLKVKTALRAGKKAV
Ga0307472_1016154961	3300032205	Hardwood Forest Soil	YAGQEDTQMRTKTTCKAGKSAWNNHSETLVRETRKNLKVRTAVRAGALKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094463

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences