Metagenome / Metatranscriptome Family F094437

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094437
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	43 residues
Representative Sequence	MKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Number of Associated Samples	83
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.58 %
% of genes near scaffold ends (potentially truncated)	35.85 %
% of genes from short scaffolds (< 2000 bps)	83.96 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.660 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.698 % of family members)
Environment Ontology (ENVO)	Unclassified (27.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.264 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.72% β-sheet: 0.00% Coil/Unstructured: 49.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF12833	HTH_18	12.26
PF03466	LysR_substrate	10.38
PF00126	HTH_1	8.49
PF01526	DDE_Tnp_Tn3	5.66
PF07694	5TM-5TMR_LYT	4.72
PF00216	Bac_DNA_binding	3.77
PF00106	adh_short	2.83
PF04199	Cyclase	1.89
PF04397	LytTR	0.94
PF01488	Shikimate_DH	0.94
PF12697	Abhydrolase_6	0.94
PF07883	Cupin_2	0.94
PF13593	SBF_like	0.94
PF13460	NAD_binding_10	0.94
PF07929	PRiA4_ORF3	0.94
PF01471	PG_binding_1	0.94
PF00356	LacI	0.94
PF10129	OpgC_C	0.94
PF08281	Sigma70_r4_2	0.94
PF01145	Band_7	0.94
PF13564	DoxX_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	5.66
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	4.72
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	3.77
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	1.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
All Organisms	root	All Organisms	44.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
cellular organisms	root	All Organisms → cellular organisms	44.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.89 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.94 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1.89 %
Armatimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	1.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.89 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.94 %
Capsulimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales	0.94 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.94 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.94 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.94 %
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	1.89 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.94 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	0.94 %
Capsulimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae	0.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.94 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.94 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.94 %
Bdellovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	1.89 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.94 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.94 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.94 %
Capsulimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas	0.94 %
unclassified Bdellovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio	0.94 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.66 %
Chloroflexia bacterium SDU3-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	1.89 %
Capsulimonas corticalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	0.94 %
Bdellovibrio sp. NC01	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. NC01	0.94 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.94 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.94 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	0.94 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.94 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101695095	Not Available	655	Open in IMG/M
3300001545\|JGI12630J15595_10001951	All Organisms → cellular organisms → Bacteria	4499	Open in IMG/M
3300001593\|JGI12635J15846_10145188	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1635	Open in IMG/M
3300001661\|JGI12053J15887_10174406	Not Available	1111	Open in IMG/M
3300001661\|JGI12053J15887_10336957	Not Available	732	Open in IMG/M
3300001867\|JGI12627J18819_10062443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1551	Open in IMG/M
3300001867\|JGI12627J18819_10070518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. NC01	1453	Open in IMG/M
3300002245\|JGIcombinedJ26739_100000102	All Organisms → cellular organisms → Bacteria	34605	Open in IMG/M
3300002245\|JGIcombinedJ26739_100451842	Not Available	1162	Open in IMG/M
3300002245\|JGIcombinedJ26739_100547492	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300002245\|JGIcombinedJ26739_101007369	Not Available	718	Open in IMG/M
3300002906\|JGI25614J43888_10004614	All Organisms → cellular organisms → Bacteria	4379	Open in IMG/M
3300002914\|JGI25617J43924_10121767	Not Available	918	Open in IMG/M
3300002917\|JGI25616J43925_10027612	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300003219\|JGI26341J46601_10107956	Not Available	806	Open in IMG/M
3300003505\|JGIcombinedJ51221_10088474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	1223	Open in IMG/M
3300004092\|Ga0062389_102360068	Not Available	703	Open in IMG/M
3300005332\|Ga0066388_108573713	Not Available	509	Open in IMG/M
3300005434\|Ga0070709_11332718	Not Available	580	Open in IMG/M
3300005436\|Ga0070713_102035334	Not Available	557	Open in IMG/M
3300005445\|Ga0070708_100010431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	7532	Open in IMG/M
3300005445\|Ga0070708_100241140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1697	Open in IMG/M
3300005467\|Ga0070706_100698870	Not Available	940	Open in IMG/M
3300005467\|Ga0070706_100944660	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005467\|Ga0070706_101657567	Not Available	583	Open in IMG/M
3300005471\|Ga0070698_101517466	Not Available	621	Open in IMG/M
3300005559\|Ga0066700_10158495	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300005559\|Ga0066700_10642289	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300005712\|Ga0070764_10388928	Not Available	822	Open in IMG/M
3300005921\|Ga0070766_10265642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium SDU3-3	1093	Open in IMG/M
3300006028\|Ga0070717_10014002	All Organisms → cellular organisms → Bacteria	6161	Open in IMG/M
3300006059\|Ga0075017_100305114	Not Available	1177	Open in IMG/M
3300006163\|Ga0070715_10808715	Not Available	569	Open in IMG/M
3300006354\|Ga0075021_10219515	Not Available	1164	Open in IMG/M
3300006797\|Ga0066659_11526624	Not Available	560	Open in IMG/M
3300007258\|Ga0099793_10346855	Not Available	725	Open in IMG/M
3300007788\|Ga0099795_10596036	Not Available	525	Open in IMG/M
3300009038\|Ga0099829_10673142	Not Available	860	Open in IMG/M
3300010154\|Ga0127503_10077776	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300012189\|Ga0137388_10347167	Not Available	1368	Open in IMG/M
3300012200\|Ga0137382_11208968	Not Available	537	Open in IMG/M
3300012202\|Ga0137363_10722214	Not Available	844	Open in IMG/M
3300012202\|Ga0137363_11107009	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012202\|Ga0137363_11561686	Not Available	552	Open in IMG/M
3300012205\|Ga0137362_10754601	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300012205\|Ga0137362_10761764	Not Available	830	Open in IMG/M
3300012205\|Ga0137362_11172471	Not Available	652	Open in IMG/M
3300012210\|Ga0137378_11631990	Not Available	553	Open in IMG/M
3300012362\|Ga0137361_10576637	Not Available	1031	Open in IMG/M
3300012685\|Ga0137397_11044516	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012924\|Ga0137413_10934166	Not Available	676	Open in IMG/M
3300012927\|Ga0137416_12123304	Not Available	516	Open in IMG/M
3300012930\|Ga0137407_11387498	Not Available	668	Open in IMG/M
3300012957\|Ga0164303_10641449	Not Available	706	Open in IMG/M
3300012960\|Ga0164301_10998744	Not Available	657	Open in IMG/M
3300012989\|Ga0164305_10384817	Not Available	1069	Open in IMG/M
3300020581\|Ga0210399_10188109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	1715	Open in IMG/M
3300020583\|Ga0210401_10811044	Not Available	796	Open in IMG/M
3300020583\|Ga0210401_10940559	Not Available	723	Open in IMG/M
3300020583\|Ga0210401_11461809	Not Available	541	Open in IMG/M
3300021046\|Ga0215015_11044131	All Organisms → cellular organisms → Bacteria	2969	Open in IMG/M
3300021171\|Ga0210405_10036748	All Organisms → cellular organisms → Bacteria	3907	Open in IMG/M
3300021171\|Ga0210405_10554174	Not Available	898	Open in IMG/M
3300021171\|Ga0210405_10656365	Not Available	813	Open in IMG/M
3300021178\|Ga0210408_10085638	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300021178\|Ga0210408_11521919	Not Available	500	Open in IMG/M
3300021180\|Ga0210396_11234402	Not Available	624	Open in IMG/M
3300021403\|Ga0210397_10457465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	961	Open in IMG/M
3300021403\|Ga0210397_11333635	Not Available	557	Open in IMG/M
3300021406\|Ga0210386_11278403	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300021420\|Ga0210394_10579492	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021479\|Ga0210410_10881084	Not Available	782	Open in IMG/M
3300021559\|Ga0210409_10124449	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300021559\|Ga0210409_10671502	Not Available	906	Open in IMG/M
3300022724\|Ga0242665_10262670	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300023056\|Ga0233357_1001226	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1884	Open in IMG/M
3300024271\|Ga0224564_1087556	Not Available	628	Open in IMG/M
3300025320\|Ga0209171_10013017	All Organisms → cellular organisms → Bacteria	7363	Open in IMG/M
3300025898\|Ga0207692_10411453	Not Available	845	Open in IMG/M
3300025915\|Ga0207693_10232225	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300025922\|Ga0207646_10838197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	818	Open in IMG/M
3300026446\|Ga0257178_1005549	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1283	Open in IMG/M
3300026508\|Ga0257161_1079213	Not Available	677	Open in IMG/M
3300026514\|Ga0257168_1118396	Not Available	590	Open in IMG/M
3300026551\|Ga0209648_10198710	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300027326\|Ga0209731_1005906	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
3300027521\|Ga0209524_1001748	All Organisms → cellular organisms → Bacteria	3744	Open in IMG/M
3300027521\|Ga0209524_1005912	All Organisms → cellular organisms → Bacteria → Proteobacteria	2347	Open in IMG/M
3300027521\|Ga0209524_1016260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1523	Open in IMG/M
3300027537\|Ga0209419_1019203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	1237	Open in IMG/M
3300027546\|Ga0208984_1099311	Not Available	629	Open in IMG/M
3300027610\|Ga0209528_1000092	All Organisms → cellular organisms → Bacteria	11056	Open in IMG/M
3300027629\|Ga0209422_1011609	Not Available	2172	Open in IMG/M
3300027738\|Ga0208989_10008952	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300027812\|Ga0209656_10003137	All Organisms → cellular organisms → Bacteria	10728	Open in IMG/M
3300027846\|Ga0209180_10509282	Not Available	673	Open in IMG/M
3300027855\|Ga0209693_10119374	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1306	Open in IMG/M
3300027895\|Ga0209624_10884409	Not Available	583	Open in IMG/M
3300027915\|Ga0209069_10765660	Not Available	573	Open in IMG/M
3300030991\|Ga0073994_12346824	Not Available	592	Open in IMG/M
3300031708\|Ga0310686_107697456	Not Available	1060	Open in IMG/M
3300031718\|Ga0307474_10214944	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300031753\|Ga0307477_10573053	Not Available	763	Open in IMG/M
3300031954\|Ga0306926_10857888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1090	Open in IMG/M
3300031962\|Ga0307479_10642499	Not Available	1042	Open in IMG/M
3300031962\|Ga0307479_11057187	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.45%
Aquatic	Environmental → Aquatic	7.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.45%
Freshwater	Environmental → Aquatic → Freshwater	3.77%
Sediment	Environmental → Aquatic → Sediment	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.60%
Loam	Environmental → Terrestrial → Soil → Loam	35.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	19.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1016950952	3300000955	Soil	MKMTTDIDQFSHVEKIATLTQLYLELMLPLQDALRAAEADL*
JGI12630J15595_100019513	3300001545	Forest Soil	MSPDIDQSSYAKKLATLTQLYLELNLPLMDALRAAEADL*
JGI12635J15846_101451883	3300001593	Forest Soil	PLLTNYDSMKMSINIDQFLYVEKLATLTQLYLELKLPLHDALRAAEADL*
JGI12053J15887_101744062	3300001661	Forest Soil	MSSDIDPFLYVENLAMLTQLYLELRLPLKEALRAAEADL*
JGI12053J15887_103369572	3300001661	Forest Soil	MSPDIEQFSHVKKLATLTQLYLELNMPLRDALRAAEADL*
JGI12627J18819_100624433	3300001867	Forest Soil	MSADIDRFPSDKKLLMLTQLYLELRLSLGDALRAAKADLSAPE*
JGI12627J18819_100705182	3300001867	Forest Soil	MKMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL*
JGIcombinedJ26739_1000001029	3300002245	Forest Soil	MKMSPDIDQSSYAKKLATLTQLYLELNLPLMDALRAAEADL*
JGIcombinedJ26739_1004518423	3300002245	Forest Soil	MPLLTNYHSMKMSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL*
JGIcombinedJ26739_1005474921	3300002245	Forest Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATXTQLYLELRLPXQDALRAAEADL*
JGIcombinedJ26739_1010073691	3300002245	Forest Soil	SNNIDQFWFVEKLTTLTQLYLELRLPVHDALRAAEADL*
JGI25614J43888_100046141	3300002906	Grasslands Soil	MSINIDQFSYFEKLAVLTRLYLELSLPVPEALRAAKADL*
JGI25617J43924_101217671	3300002914	Grasslands Soil	KMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL*
JGI25616J43925_100276124	3300002917	Grasslands Soil	MKMSTNIDQFSYFEKLATLTRLYLELSLPVPEALRAAKADL*
JGI26341J46601_101079562	3300003219	Bog Forest Soil	MKMSTDISQFSYLDKLATLTRLYFELGLPSPDALRAAEADL*
JGIcombinedJ51221_100884743	3300003505	Forest Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0062389_1023600682	3300004092	Bog Forest Soil	MKMIDIRQFSHLEKLVALTRLYLELRLPLAGALRAATADLQMES
Ga0066388_1085737131	3300005332	Tropical Forest Soil	MKMSAYIDQLPYAEKLATLTQLYLELSLPLENALRAAEADLCH
Ga0070709_113327182	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLLPTNYHFMKMTTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0070713_1020353341	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKMSANIDQFSYFEKLATLTRLYLELSLPVPEALRAAKADL*
Ga0070708_1000104315	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPLLANYHCMKMSTDIDQFSHVEKLATLTQLYLELRLSLQEALRAAEADL*
Ga0070708_1002411403	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKISTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0070706_1006988702	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LLTNYDSMKMSNNIDQFSLVEKLTTLTQLYLELRLPLHDALRAAEADL*
Ga0070706_1009446602	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKMITDIDQFSHVEKLSMLTQLYLQLRLPLQDALRAAEADL*
Ga0070706_1016575671	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKMTTDIDQFSHVEKLATLTQLYLELRLPLHDALRAAEADL*
Ga0070698_1015174662	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPLLTNYHFMKISTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0066700_101584952	3300005559	Soil	MPLLTNYDSMKMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL*
Ga0066700_106422892	3300005559	Soil	MSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0070764_103889282	3300005712	Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAAEADL*
Ga0070766_102656422	3300005921	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0070717_100140023	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPILTNYHFMKISTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0075017_1003051142	3300006059	Watersheds	NYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAAEADL*
Ga0070715_108087151	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSTDIDQFSHVEKLATLTQLYLELRLPLHDALRAAEADL*
Ga0075021_102195152	3300006354	Watersheds	MKMTTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0066659_115266242	3300006797	Soil	MKMSTDIDQFSPVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0099793_103468551	3300007258	Vadose Zone Soil	MPLFTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLHDALRAAEADL*
Ga0099795_105960361	3300007788	Vadose Zone Soil	MKMTTDIDQFSDVEQLAALTQLYLELRLPLQDALRAAEADLWDP*
Ga0099829_106731421	3300009038	Vadose Zone Soil	HSLPTTILMKMSINIDQFSYVEKLATLTQLYLELRLPLHDALRAAEADL*
Ga0127503_100777764	3300010154	Soil	MKMSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0137388_103471672	3300012189	Vadose Zone Soil	MKMSINIDQFSYVEKLATLTQLYLELRLPLHDALRAAEADL*
Ga0137382_112089681	3300012200	Vadose Zone Soil	HSMKMSPDIDQSSYVKKLVTLTQLYLELNLPSMDALRAAEADL*
Ga0137363_107222142	3300012202	Vadose Zone Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEA
Ga0137363_111070091	3300012202	Vadose Zone Soil	MPLFTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0137363_115616862	3300012202	Vadose Zone Soil	LTNYDSMKMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL*
Ga0137362_107546013	3300012205	Vadose Zone Soil	MKMGPDIDQSLYVKKLATLTQLYLGLNLLLMDGLRAAEADL
Ga0137362_107617642	3300012205	Vadose Zone Soil	MKMTIDIDQFSHVEKIATLTQLYLELMLPLQDALRAAEADL*
Ga0137362_111724711	3300012205	Vadose Zone Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAKADL*
Ga0137378_116319901	3300012210	Vadose Zone Soil	MKMSTDIDQFSLVEKLATLTQLYLALRLPLQDALRAAEADL*
Ga0137361_105766371	3300012362	Vadose Zone Soil	MKVTIDIDQFSDVEQLAALTQLYLELRLPLQDALRAAEADLWDP*
Ga0137397_110445162	3300012685	Vadose Zone Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLRDALRAAEADL*
Ga0137413_109341662	3300012924	Vadose Zone Soil	FSDVEQLAALTQLYLELRLPLQDALRAAEADLWDP*
Ga0137416_121233042	3300012927	Vadose Zone Soil	FMKMSTVIDQFSHVEKLATLTPLYLELRLPLQDALRAAEADL*
Ga0137407_113874981	3300012930	Vadose Zone Soil	MKMSIDIDQFSYAEKLATLTQRYLELRLSLQDALRAAEADP*
Ga0164303_106414492	3300012957	Soil	MKMSTDIDQFSHVEKLATLTQLYLKLRLPLRDALRAAEADL*
Ga0164301_109987442	3300012960	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLRDALRAAEA
Ga0164305_103848171	3300012989	Soil	STDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL*
Ga0210399_101881094	3300020581	Soil	CASDLEALMPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210401_108110442	3300020583	Soil	MKLSINIDQFSYVEKLATLTQLYLELRLPLHDALQAVE
Ga0210401_109405592	3300020583	Soil	DIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210401_114618092	3300020583	Soil	MIDIPQISHLEKLVALTRLYLELRLPLAGALRAATADLQMESLP
Ga0215015_110441312	3300021046	Soil	MRPDIDQSSHVKKLATLTQLYLELNLSLMDALRAAQADL
Ga0210405_100367484	3300021171	Soil	MPLLTNYHFMKISTDIDQFSHVEKLATLTQLYLELSLPLQDALRAAEADL
Ga0210405_105541741	3300021171	Soil	MPLLANYHSMKMRTNIDQFSLVEKLATLTQLYLALRLPLQDALRAAEADL
Ga0210405_106563652	3300021171	Soil	MPLLTNYHFMKMSTDIDQLSGVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210408_100856381	3300021178	Soil	GPSVNNIDQFWYVEKLTTLTHLYLELRLPLHDALRAAEADL
Ga0210408_115219191	3300021178	Soil	MSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210396_112344022	3300021180	Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATLTHLYLELRLPLQDALRAAEADL
Ga0210397_104574652	3300021403	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210397_113336351	3300021403	Soil	LTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210386_112784031	3300021406	Soil	HFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210394_105794922	3300021420	Soil	IDQFVYVEKIATLTQLYLELKLPLHDALRAAEADL
Ga0210410_108810842	3300021479	Soil	SELETLMPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0210409_101244492	3300021559	Soil	MKMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL
Ga0210409_106715022	3300021559	Soil	MKMSTDIDQFSLVEKLVTLTQLYLELRLPLQDALRAAEADL
Ga0242665_102626701	3300022724	Soil	LTNYHSMKMSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0233357_10012262	3300023056	Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAAEADL
Ga0224564_10875562	3300024271	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPLHDALRAAEADL
Ga0209171_100130179	3300025320	Iron-Sulfur Acid Spring	MPLLTNYDSMKISINIDQFLYVEKLATLTQLYLELKLPLHDALRAAEADL
Ga0207692_104114531	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	HFMKMTTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0207693_102322253	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPLRDALRAAEADL
Ga0207646_108381972	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKISTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0257178_10055492	3300026446	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAAEADL
Ga0257161_10792132	3300026508	Soil	MSADIDQFSQVKKLATLTRLYLELNMPLMDALRAAEADL
Ga0257168_11183961	3300026514	Soil	MKMSTDIDQFSHVEKLATLTQLYLELRLPIQDALRAAEADL
Ga0209648_101987101	3300026551	Grasslands Soil	KMSNNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL
Ga0209731_10059061	3300027326	Forest Soil	NNIDQFWYVEKLTTLTQLYLELRLPLHDALRAAEADL
Ga0209524_10017484	3300027521	Forest Soil	MKMSPDIDQSSYAKKLATLTQLYLELNLPLMDALRAAEADL
Ga0209524_10059125	3300027521	Forest Soil	MPLLTNYHSMKMSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0209524_10162603	3300027521	Forest Soil	MPLLTNYDSMKMSINIDQFSYVEKLATLTQLYLELRLPLHDALRAAEADL
Ga0209419_10192031	3300027537	Forest Soil	SPDIDQSSYAKKLATLTQLYLELNLPLMDALRAAEADL
Ga0208984_10993111	3300027546	Forest Soil	MPLLTNYHFMKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAADADL
Ga0209528_10000923	3300027610	Forest Soil	MSPDIEQFSHVKKLATLTQLYLELNMPLRDALRAAEADL
Ga0209422_10116093	3300027629	Forest Soil	MPLLTNYYFMKMSTDIDQFSHVEKLATLTQLYLELRLPVQDALRAAEADL
Ga0208989_100089522	3300027738	Forest Soil	MKMSPNIDQFSYVKKLATLTQLYLELNLTLMDALRAADADL
Ga0209656_100031373	3300027812	Bog Forest Soil	MKMSTDISQFSYLDKLATLTRLYFELGLPSPDALRAAEADL
Ga0209180_105092821	3300027846	Vadose Zone Soil	NIDQFSYVEKLATLTQLYLELRLPLHDALRAAEADL
Ga0209693_101193741	3300027855	Soil	MKMSIDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0209624_108844091	3300027895	Forest Soil	MKMNTDIDQFSHVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0209069_107656601	3300027915	Watersheds	MPLLTNYHFMKMSTDIDQFSLGEKLAALTQLYLELRLPLHDALRAAEA
Ga0073994_123468241	3300030991	Soil	TNYHSMKMSTDIDQFTLVEKLATLTQLYLELRLPLQDALRAAEADL
Ga0310686_1076974562	3300031708	Soil	MKMSMNIDQFLYVEKLATLTQLYLELRLPLHDALRAAEADL
Ga0307474_102149442	3300031718	Hardwood Forest Soil	MKMRTNIDQFSLVEKLATLTQLYLALRLPLQDALRAAEADL
Ga0307477_105730532	3300031753	Hardwood Forest Soil	MKMSTDIDQFSLVEKLATLTQLYLALRLPLQDALRAAEADL
Ga0306926_108578881	3300031954	Soil	MKRSAYIDQLPYAEKLATLTQLYLELSLPLENALRAAKANL
Ga0307479_106424991	3300031962	Hardwood Forest Soil	MKMSTDIDQFSLVEKLATLTQLYLALRLPLQDALRAAEADLC
Ga0307479_110571871	3300031962	Hardwood Forest Soil	LETLMPLLTNYHSMKMSTDIDQFSLVEKLATLTQLYLELRLPLQDALRAAEADL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences