Metagenome / Metatranscriptome Family F094352

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094352
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	126 residues
Representative Sequence	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS
Number of Associated Samples	88
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.29 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	71.70 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.057 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.472 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.943 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 62.42% β-sheet: 0.00% Coil/Unstructured: 37.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02653	BPD_transp_2	42.45
PF00501	AMP-binding	25.47
PF00005	ABC_tran	4.72
PF13458	Peripla_BP_6	2.83
PF02771	Acyl-CoA_dh_N	0.94
PF12399	BCA_ABC_TP_C	0.94
PF00037	Fer4	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.94

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.43 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	33.02 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	33.02 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.53 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	33.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.49 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.66 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	33.02 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.83 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.83 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	24.53 %
Candidatus Rokubacteria bacterium RBG_16_73_20	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	8.49 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	2.83 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.89 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	24.53 %
Candidatus Rokubacteria bacterium RBG_16_73_20	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	8.49 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2.83 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.89 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.94 %
Unclassified	root	N/A	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100410260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1233	Open in IMG/M
3300004479\|Ga0062595_100812104	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	772	Open in IMG/M
3300005341\|Ga0070691_10294130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	885	Open in IMG/M
3300005444\|Ga0070694_100000390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23753	Open in IMG/M
3300005445\|Ga0070708_100134183	All Organisms → cellular organisms → Bacteria → Proteobacteria	2292	Open in IMG/M
3300005445\|Ga0070708_100357291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1377	Open in IMG/M
3300005445\|Ga0070708_100457260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300005445\|Ga0070708_100814752	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	877	Open in IMG/M
3300005467\|Ga0070706_100592449	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1030	Open in IMG/M
3300005467\|Ga0070706_100653236	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300005518\|Ga0070699_100248946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1587	Open in IMG/M
3300005875\|Ga0075293_1005668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1293	Open in IMG/M
3300005879\|Ga0075295_1005819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1155	Open in IMG/M
3300005888\|Ga0075289_1046538	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	674	Open in IMG/M
3300006047\|Ga0075024_100031667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2167	Open in IMG/M
3300006050\|Ga0075028_100009023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4045	Open in IMG/M
3300006050\|Ga0075028_100611876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300006057\|Ga0075026_100092877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1488	Open in IMG/M
3300006172\|Ga0075018_10020233	All Organisms → cellular organisms → Bacteria → Proteobacteria	2568	Open in IMG/M
3300006173\|Ga0070716_100018634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3618	Open in IMG/M
3300006175\|Ga0070712_100352838	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300006804\|Ga0079221_10904449	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300006852\|Ga0075433_10573257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300006854\|Ga0075425_100436828	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300006854\|Ga0075425_102205300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300006903\|Ga0075426_10773696	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300006914\|Ga0075436_100019580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4638	Open in IMG/M
3300007258\|Ga0099793_10701989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300007265\|Ga0099794_10079694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1613	Open in IMG/M
3300009088\|Ga0099830_10179743	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300009143\|Ga0099792_10555526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300009147\|Ga0114129_10537650	All Organisms → cellular organisms → Bacteria → Proteobacteria	1521	Open in IMG/M
3300009162\|Ga0075423_10006649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10860	Open in IMG/M
3300011270\|Ga0137391_10081984	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
3300012096\|Ga0137389_10625452	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	925	Open in IMG/M
3300012202\|Ga0137363_10273284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1380	Open in IMG/M
3300012202\|Ga0137363_10408082	All Organisms → cellular organisms → Bacteria → Proteobacteria	1132	Open in IMG/M
3300012202\|Ga0137363_11777324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300012203\|Ga0137399_10309555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1306	Open in IMG/M
3300012203\|Ga0137399_11186590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	643	Open in IMG/M
3300012205\|Ga0137362_10127517	All Organisms → cellular organisms → Bacteria → Proteobacteria	2162	Open in IMG/M
3300012211\|Ga0137377_10585302	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300012359\|Ga0137385_11670738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300012362\|Ga0137361_10413104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1240	Open in IMG/M
3300012582\|Ga0137358_10132212	All Organisms → cellular organisms → Bacteria → Proteobacteria	1697	Open in IMG/M
3300012917\|Ga0137395_10033448	All Organisms → cellular organisms → Bacteria	3120	Open in IMG/M
3300012917\|Ga0137395_10393410	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300012930\|Ga0137407_11106985	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	751	Open in IMG/M
3300012931\|Ga0153915_10098175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3104	Open in IMG/M
3300012931\|Ga0153915_13375917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300015245\|Ga0137409_10032939	All Organisms → cellular organisms → Bacteria → Proteobacteria	5011	Open in IMG/M
3300015264\|Ga0137403_11405510	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300015371\|Ga0132258_12415282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1316	Open in IMG/M
3300015371\|Ga0132258_13331601	All Organisms → cellular organisms → Bacteria → Proteobacteria	1105	Open in IMG/M
3300017927\|Ga0187824_10140588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	796	Open in IMG/M
3300017930\|Ga0187825_10003150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5334	Open in IMG/M
3300017993\|Ga0187823_10135503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300019887\|Ga0193729_1081102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1265	Open in IMG/M
3300021432\|Ga0210384_10664958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	933	Open in IMG/M
3300021479\|Ga0210410_10732376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	871	Open in IMG/M
3300024224\|Ga0247673_1029124	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300024330\|Ga0137417_1168798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300025910\|Ga0207684_10021471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5513	Open in IMG/M
3300025910\|Ga0207684_10049950	All Organisms → cellular organisms → Bacteria → Proteobacteria	3548	Open in IMG/M
3300025910\|Ga0207684_10054897	All Organisms → cellular organisms → Bacteria	3380	Open in IMG/M
3300025910\|Ga0207684_10143808	All Organisms → cellular organisms → Bacteria → Proteobacteria	2051	Open in IMG/M
3300025922\|Ga0207646_10329796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1379	Open in IMG/M
3300025939\|Ga0207665_10014000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5275	Open in IMG/M
3300026001\|Ga0208000_102113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1047	Open in IMG/M
3300026340\|Ga0257162_1008880	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300026355\|Ga0257149_1013425	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080	Open in IMG/M
3300026369\|Ga0257152_1008983	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300026377\|Ga0257171_1038296	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300026498\|Ga0257156_1015000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1508	Open in IMG/M
3300026499\|Ga0257181_1002638	All Organisms → cellular organisms → Bacteria → Proteobacteria	1844	Open in IMG/M
3300026507\|Ga0257165_1043618	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300026551\|Ga0209648_10423724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	850	Open in IMG/M
3300027603\|Ga0209331_1045637	All Organisms → cellular organisms → Bacteria → Proteobacteria	1111	Open in IMG/M
3300027645\|Ga0209117_1013850	All Organisms → cellular organisms → Bacteria	2678	Open in IMG/M
3300027651\|Ga0209217_1046538	All Organisms → cellular organisms → Bacteria → Proteobacteria	1318	Open in IMG/M
3300027655\|Ga0209388_1015669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	2086	Open in IMG/M
3300027671\|Ga0209588_1001416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6258	Open in IMG/M
3300027862\|Ga0209701_10135959	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RBG_16_73_20	1511	Open in IMG/M
3300027873\|Ga0209814_10294855	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300027903\|Ga0209488_10611824	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300028536\|Ga0137415_10237997	All Organisms → cellular organisms → Bacteria → Proteobacteria	1631	Open in IMG/M
3300028824\|Ga0307310_10758489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300029636\|Ga0222749_10003346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	7024	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1019499	All Organisms → cellular organisms → Bacteria → Proteobacteria	1393	Open in IMG/M
3300031720\|Ga0307469_10010958	All Organisms → cellular organisms → Bacteria → Proteobacteria	4443	Open in IMG/M
3300031720\|Ga0307469_12458897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300031820\|Ga0307473_10246513	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300031820\|Ga0307473_10697731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300031962\|Ga0307479_10028791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5288	Open in IMG/M
3300032180\|Ga0307471_100321752	All Organisms → cellular organisms → Bacteria → Proteobacteria	1644	Open in IMG/M
3300032205\|Ga0307472_100256497	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300032770\|Ga0335085_10025604	All Organisms → cellular organisms → Bacteria	8300	Open in IMG/M
3300032829\|Ga0335070_10160102	All Organisms → cellular organisms → Bacteria → Proteobacteria	2279	Open in IMG/M
3300032954\|Ga0335083_10247063	All Organisms → cellular organisms → Bacteria → Proteobacteria	1598	Open in IMG/M
3300033412\|Ga0310810_10004600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15290	Open in IMG/M
3300033432\|Ga0326729_1010417	All Organisms → cellular organisms → Bacteria → Proteobacteria	1631	Open in IMG/M
3300033433\|Ga0326726_10021830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5564	Open in IMG/M
3300033433\|Ga0326726_10225998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1735	Open in IMG/M
3300033480\|Ga0316620_10168129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1786	Open in IMG/M
3300033513\|Ga0316628_100358953	All Organisms → cellular organisms → Bacteria → Proteobacteria	1837	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.57%
Host-Associated	Host-Associated	9.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.13%
Aquatic	Environmental → Aquatic	9.43%
Plants	Host-Associated → Plants	9.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.55%
Freshwater	Environmental → Aquatic → Freshwater	4.72%
Sediment	Environmental → Aquatic → Sediment	4.72%
Peat	Environmental → Terrestrial → Peat	2.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.06%
Loam	Environmental → Terrestrial → Soil → Loam	19.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.32%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.72%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026001	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033432	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004102601	3300002245	Forest Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGVPVVLGPEQDCERPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWKVERREIEAKYRDMLGAFERRCRAVISLIGWAVRAA
Ga0062595_1008121042	3300004479	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAVLGPEEDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPPGTAGVDCRTGEQRRFDARWEVERREIEAKYRDVLGAFERRCRAVIS
Ga0070691_102941301	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LTILWIGGAGTAGSPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRRAEQRRFDGRWEEQRRAIEAKYRQVLGAFE
Ga0070694_10000039021	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LPAKTRVYVHILTILWIGGAGTAGSPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRRAEQRRFDGRWEEQRRAIEAKYRQVLGAFEQQCRTLISLIGQRVRAAS*
Ga0070708_1001341832	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSDFGRQDKGYGEFTVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPALPRRGRGRALPADEQQRFDARWEAERLKIEAKYRDVLGALEQRCRGAISLIR*
Ga0070708_1003572911	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLLAGGAPGAASQGPGGPELDCEHPAEARAFIGQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYGLRAAS*
Ga0070708_1004572602	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LTVLWAIWPLAPGAPAALGPEVDCGHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCEVRAAS*
Ga0070708_1008147521	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFAVIWLTVLWSTGPLASGAPAALGPELDCAHAAEARAFIARLHLAEIEGAEDIHREAMWEAFGRCPPGGAGGACRTEEQRRFDARWEAERREIDAKYRDVLGAFELQCRAVISLIGWAVREAS*
Ga0070706_1005924492	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFTVIWLTVLWTGGALAPGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGVAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0070706_1006532362	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFTVIWLTVLWAIWPLAPGAPAALGPEVDCGHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCEVRAAS*
Ga0070699_1002489463	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VIWLTVLWSTGPLASGAPAALGPELDCAHAAEARAFIARLHLAEIEGAEDIHREAMWEAFGRCPPGGAGGACRTEEQRRFDARWEAERREIDAKYRDVLGAFELQCRAVISLIGWAVREAS*
Ga0075293_10056681	3300005875	Rice Paddy Soil	LPAKTRVYAYILTVLWAGAVGTPAAGAPELDCDRPAEARALIALLQLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRSEEQRRFEGRWEEQRKAIEAKYRQVLRDFEERCRSVIAAS*
Ga0075295_10058192	3300005879	Rice Paddy Soil	LPAKTRVYVHILTILWIGGAGTAGSPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRRAEQRRFDGRWEEQRRAIEAKYRQVLGTFEQQCRTLISLIGQRVRAAS*
Ga0075289_10465382	3300005888	Rice Paddy Soil	AKTRVYAYILTVLWAGAVGTPAAGAPELDCDRPAEARALIALLQLAEIEGAKDIHRAAMWEAFGRCPAGDAGGPCRSEEQRRFEGRWEEQRKAIEARYGDVLRAFEERCRAVIAAS*
Ga0075024_1000316672	3300006047	Watersheds	VSDFDHQDKGYDDIYGHLADILWATGALAPGSSAALGPEQDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRARQGPPEEPVGQKSSGYDVRWEAERLQIDAKYREVLGAFEHDAELS*
Ga0075028_1000090233	3300006050	Watersheds	VSDFDHQDKGYDEFTVIWLTVLWATGALAPGSSAALGPEQDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRARQGPPEEPVGQKSSGYDVRWEAERLQIDAKYREVLGAFGSDAELS*
Ga0075028_1006118761	3300006050	Watersheds	FTVIWLTVLWATGPLSPGAPAMLGPEQDCEHPAEARAFIARLRVAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQHRFDARWEVERREIEAKYRDVLGAFERRCRAVISLIGWPIRAVS*
Ga0075026_1000928772	3300006057	Watersheds	VSDFDHQDKGYDEFTVIWLTVLWATGALAPGSSAALGPEQDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRARQGPPEEPVGQKSSGDDVRWEAERLQIDAKYREVLGAFGSDAELS*
Ga0075018_100202332	3300006172	Watersheds	VSDFDHQDKGYDDITVIWLTVLWATGALAPGSSAALGPEQDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRARQGPPEEPVGQKSSGYDVRWEAERLQIDAKYREVLGAFEHDAELS*
Ga0070716_1000186342	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VVLLAGGAPGAASQGHGAPELDCEHPAEARAFIAQLQMAETEGAEDIHREAMWNAFGRCPAGDAGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYRLRAAS*
Ga0070712_1003528382	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LPAKTRVYGYIFVVLLAGGAPGAASERQGGPELDCEHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRRAIEAKYREVLGAFEQRCRAIISLLGYGVRAAS*
Ga0079221_109044492	3300006804	Agricultural Soil	LPAKTRVYGHILTILWLGGAGTVAGGAVAAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQRRFDSRWEEQRRAIEAKYRQVLGAFEQRCRTLISLM*
Ga0075433_105732572	3300006852	Populus Rhizosphere	LPARTRVYGYIFVVLLAGGAPGAASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREERRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISVLGYGVRAAS*
Ga0075425_1004368282	3300006854	Populus Rhizosphere	LPARTRVYGYIFVVLLAGGAPRAASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREERRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISVLGYGVRAAS*
Ga0075425_1022053001	3300006854	Populus Rhizosphere	LPARTRVYGHIFMVLLAGGALGAASQGQGSPELDCEHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDAGGPCRREEQRRFEAQWEAKRRGIEAKYREVLGAFEQRCRAIISLLGYGVRAAS*
Ga0075426_107736962	3300006903	Populus Rhizosphere	AASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISVLGYGVRAAS*
Ga0075436_1000195803	3300006914	Populus Rhizosphere	VVLLAGGAPGAASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREERRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISVLGYGVRAAS*
Ga0099793_107019891	3300007258	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGAAGGHCRTDEQQRFDARWEAERLKIEAKYRDVLGA
Ga0099794_100796943	3300007265	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTDEQQRFDARWEAERLKIEAKYRNVLGAFEQRCRGAISLIR*
Ga0099830_101797432	3300009088	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGAAGGHCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0099792_105555262	3300009143	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS*
Ga0114129_105376502	3300009147	Populus Rhizosphere	MVLLAGGALGAASQGQGSPELDCERPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDAGGPCRREEQRRFEAQWEAKRRGIEAKYREVLGAFEQRCRAIISLLGYGVRAAS*
Ga0075423_100066497	3300009162	Populus Rhizosphere	LPARTRVYGYIFVVLLAGGAPGAASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIIGVLGYGVRAAS*
Ga0137391_100819842	3300011270	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTNEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137389_106254521	3300012096	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTDEQQRFDARWEAERLKIEAKYRNVLGAFEQRCRGAISLIR*
Ga0137363_102732842	3300012202	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGVAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137363_104080822	3300012202	Vadose Zone Soil	LPAKTRVYGYIFVVLLAGGAPGAASERQGGPELDCEHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRRAIEAKYREVLGTFEQRCRAIISLLGYGVRAAS*
Ga0137363_117773241	3300012202	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLHLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQQRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKC
Ga0137399_103095552	3300012203	Vadose Zone Soil	LTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS*
Ga0137399_111865902	3300012203	Vadose Zone Soil	FTAIFSVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGAAGGHCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR
Ga0137362_101275172	3300012205	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFARCPDGVAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137377_105853021	3300012211	Vadose Zone Soil	TVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGVAGGPCRMDEQQRFDARWEVERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137385_116707381	3300012359	Vadose Zone Soil	PGQGFTAIFTVIWLTVLWTGGALAQGPPAAAAPDLDCEHPAEARAFIARLRLAESEGAEDIHREAMWEAFGRCPDGVAGGPCRMDEQQRFDARWEVERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137361_104131041	3300012362	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLHLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQQRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIGCAVRAAS*
Ga0137358_101322122	3300012582	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGAACRTEEQQRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS*
Ga0137395_100334482	3300012917	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGAAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR*
Ga0137395_103934102	3300012917	Vadose Zone Soil	FTAIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS*
Ga0137407_111069852	3300012930	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQQRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIGCAVRAAS*
Ga0153915_100981752	3300012931	Freshwater Wetlands	LPAKTRVYGYILTALWAGASGTPAVSGPELDCERPAEARAFIARLRLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRSAEQRRFEELWEQQRREIEAKYREVLGAFELRCRAIISLIR*
Ga0153915_133759172	3300012931	Freshwater Wetlands	QGLRGVKTLPAKTRVYGYILTALWAGGAGAAGSPAAPALDLDCERPAEARAFIALLQLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRSEEQRRFEGRWEEQRKAIEAKYRRVLRDFEERCRAVIAAS*
Ga0137409_100329393	3300015245	Vadose Zone Soil	LTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS*
Ga0137403_114055101	3300015264	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQQRFDARWEVERREIEAKYHGVL
Ga0132258_124152822	3300015371	Arabidopsis Rhizosphere	LPAKTRVYGHILTILWIAGAGTVGDPAAIAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQHRFESQWEDQRRAIEGKYRQMLGAFEQQCRTLI
Ga0132258_133316012	3300015371	Arabidopsis Rhizosphere	LPAKTRVYGHILTILWITGSGATGNPASAAPELDCNHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPPGDAGGPCRREEQRRFDSQWEDQRRAIEAKYRQVLGAFEQRCRTLISLIEQQVRAAS*
Ga0187824_101405881	3300017927	Freshwater Sediment	LPAKTRVYGHILTILWIGGAGTAGDPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQRRFDGRWEEQRRAIEAKYRRVLGAFEQRCRTLISLIGQ
Ga0187825_100031505	3300017930	Freshwater Sediment	LPAKTRVYGHILTILWIGGAGTAGNPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQRRFDGRWEEQRRAIEAKYRRVLGAFEQRCRTLISLIGQ
Ga0187823_101355032	3300017993	Freshwater Sediment	LPAKTRVYGHILTILWLGGAGTVAGGAVAAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQRRFDGRWEEQRRAIEAKYRRVLGAFEQRCRTLISLIGQ
Ga0193729_10811022	3300019887	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGRLGPGAPAGLGPEQDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEAKYREALGAFERRCRAVISLIGWAVRAAS
Ga0210384_106649582	3300021432	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQQRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIGCAVRAAS
Ga0210410_107323761	3300021479	Soil	SLNHGLQGVKTLPAKTRVYGYIFVVLLAGGAPGAASERQGGPELDCEHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRRAIEAKYREVLGAFEQRCRAIISLLGYGVRAAS
Ga0247673_10291242	3300024224	Soil	MVIWLTVLWATGLLAPGTPAAGGPDLDCERPVESRAFIGRLRLAEIEGAEDIHREAMWAAFGRCPPEGAGAACRTEEQRRFDARWEVQRRAIEAKYRAVLGAFEQRCRGAISQTGQVVRAAS
Ga0137417_11687982	3300024330	Vadose Zone Soil	IFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTDEQQRFDARWEAERLKIEAKYRNVLGAFEQRCRGAISLIR
Ga0207684_100214716	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFAVIWLTVLWSTGPLASGAPAALGPELDCAHAAEARAFIARLHLAEIEGAEDIHREAMWEAFGRCPPGGAGGACRTEEQRRFDARWEAERREIDAKYRDVLGAFELQCRAVISLIGWAVREAS
Ga0207684_100499504	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VLLAGGAPGAASQGPGGPELDCEHPAEARAFIGQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYGLRAAS
Ga0207684_100548973	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFTVIWLTVLWTGGALAPGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGVAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR
Ga0207684_101438083	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LTVLWAIWPLAPGAPAALGPEVDCGHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCEVRAAS
Ga0207646_103297962	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSRLRPPGQGFTAIFTVIWLTVLWTGGALVQGPPAAAAPDLDCEHPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGVAGGPCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR
Ga0207665_100140004	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VVLLAGGAPGAASQGHGAPELDCEHPAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDAGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYRLRAAS
Ga0208000_1021132	3300026001	Rice Paddy Soil	LPAKTRVYVHILTILWIGGAGTAGSPAAVAPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRRAEQRRFDGRWEEQRRAIEAKYRQVLGTFEQQCRTLISLIGQRVRAAS
Ga0257162_10088801	3300026340	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS
Ga0257149_10134251	3300026355	Soil	VSRLRPPGQGFTAIFTVIWLTVWAIWPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS
Ga0257152_10089831	3300026369	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS
Ga0257171_10382962	3300026377	Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPEVDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS
Ga0257156_10150003	3300026498	Soil	AIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS
Ga0257181_10026382	3300026499	Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTNEQQRFDARWEAERLKIEAKYRDVLGAFEQRCRGAISLIR
Ga0257165_10436182	3300026507	Soil	VSRLRPPGQGFTAIFTVIWLTVWAIWPLAPGAPAALGPEVDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRVAS
Ga0257161_10027731	3300026508	Soil	VSRLRPPGQGFTAIFTVIWLTALWATGPLAPDAPAGLGPEQDCERPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEA
Ga0209648_104237241	3300026551	Grasslands Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVITLIECAVRA
Ga0209331_10456372	3300027603	Forest Soil	VSRLRPPGQGFTAIFTVIWLRALWATGPLAPDAPAGLGPEQDCERPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEAKYRDVLGAFERRCRAVISLFVWAVRAAS
Ga0209117_10138503	3300027645	Forest Soil	VSRLRPPGQGFTAIFTVIWLTALWATGPLAPDAPAGLGPEQDCERPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEAKYRDVLGAFERRCRAVISLFVWAVRAAS
Ga0209217_10465382	3300027651	Forest Soil	MLLLAGGALGAASKGQGGPELDCGHPAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGAPCRREEQRRFEAQWEAKRRQIEAKYCEVLGAFEQRCRAIISLLGQ
Ga0209388_10156692	3300027655	Vadose Zone Soil	LTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS
Ga0209588_10014161	3300027671	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPEPDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIECAVRV
Ga0209701_101359592	3300027862	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGAAGGHCRTDEQQRFDARWEAERLKIEAKYRDVLGAFEQ
Ga0209814_102948552	3300027873	Populus Rhizosphere	LPARTRVYGYIFVVLLAGGAPRAASQGQGGPELDCGHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREERRRFEAQWEAKRREIEAKYREALGAFEQRCRAIISMLGYGVRAAS
Ga0209488_106118242	3300027903	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWATGPLAPGAPAALGPELDCEHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCAVRAAS
Ga0137415_102379972	3300028536	Vadose Zone Soil	VSRLRPPGQGFTAIFTVIWLTVLWAGGALAPGPPAAAAPDLDCERPAEARAFIARLRLAEIEGAEDIHREAMWEAFGRCPDGFAGGPCRTDEQQRFDARWEAERLKIEAKYRNVLGAFEQRCRGAISLIR
Ga0307310_107584891	3300028824	Soil	WATGPLASGAPAVLGPEEDCEHPAEARAFIARLRLAEIEGAEDIHREAMWQAFGRCPSGAAGGACRAEEQRRFDARWEVERREIEAKYRDLLGAFERRCRAVISLIRWPIRSVS
Ga0222749_100033463	3300029636	Soil	VVLLAGGAPGAASERQGGPELDCEHPAQARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRRAIEAKYREVLGAFEQRCRAIISLLGYGVRAAS
(restricted) Ga0255311_10194992	3300031150	Sandy Soil	LPAKTRVYGHILTILWIGGAGAAGDPAAVAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGGPCRREEQRRFDGRWEEQRRAIEAKYRQVLGAFEQQCRTLISLIGQRVRAAS
Ga0307469_100109584	3300031720	Hardwood Forest Soil	LTILWAIWPLAPGAPAALGPEVDCGHPAEARAFIARLQLAEIEGAEDIHREAMWQAFGRCPPGGAGGACRTEEQRRFDARWEVERREIEAKYRGVLGDFERRCRAVISLIKCEVRAAS
Ga0307469_124588971	3300031720	Hardwood Forest Soil	VKTLPARTRVYGYIFVVLLAGGAPGAASQGHGAPELDCEHPAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEARWEAKRREIEAKYREVLGAFEQRCRAIISLLG
Ga0307473_102465132	3300031820	Hardwood Forest Soil	VSRLRPPGQGFTAIFTVIWLTVLWSTGPLASGAPAALGPELDCAHAAEARAFIARLHLAEIEGAEDIHREAMWEAFGRCPPGGAGGACRTEEQQRFDARWEAERREIDAKYRDVLGAFELQCRAVISLIGWVVRAAS
Ga0307473_106977311	3300031820	Hardwood Forest Soil	LPARTRVYGYIFVVLLAGGAPGAASQGHGAPELDCEHPAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYRLRAAS
Ga0307479_100287913	3300031962	Hardwood Forest Soil	VVLLAGGAPGAASQGHGAPELDCEHPAEARAFIAQLQIAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYRLRAAS
Ga0307471_1003217522	3300032180	Hardwood Forest Soil	VLLAGGAPGAASQGQGGPELDCEHPAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDTGGPCRREEQRRFEAQWEAKRREIEAKYREVLGAFEQRCRAIISLLGYRLRAAS
Ga0307472_1002564972	3300032205	Hardwood Forest Soil	MLLLAGGTLGAASQGQGGPELDCGHRAEARAFIAQLQMAEIEGAEDIHREAMWNAFGRCPAGDGGGPCRREEQRRFEAQWEAKRREIEAKYREVLGTFEQRCRAIISLLGYRLRAAS
Ga0335085_100256042	3300032770	Soil	LPAKTRVYGHILMFLWVGGSGVAASPAALAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPPAEAGGPCRREEQQRFESQWEDQRRAIEAKYRKMLGAFELRCRALISLIGQRVRAAS
Ga0335070_101601022	3300032829	Soil	LPAKTRVYGHILMFLWVGGSGVAASRAALAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPPAEAGGPCRREEQQRFESQWEDQRRAIEAKYRKMLGAFELRCRALISLIGQRVRAAS
Ga0335083_102470633	3300032954	Soil	LPAKTRVYGHILMFLWVGESGVAASPAALAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPPADAGGPCRREEQQRFESQWEDQRRAIEAKYRKMLGAFELRCRALISLIGQRVRAAS
Ga0310810_100046003	3300033412	Soil	LPAKTRVYGHILTILWIGGAGAAGNPAALGPELDCEHPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDAGEPCRQEEQRRFDSRWEDQRRAIEAKYRQVLGAFEQRCRTLISLIEQQVRAAS
Ga0326729_10104173	3300033432	Peat Soil	LPAKTRVYGHILTILWIGGSGAAGTSAALAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDTGGPCRREEQRRFESQWEEQRRAIEAKYRQVLGAFEQRCRALISLIEPGIRAAS
Ga0326726_100218306	3300033433	Peat Soil	LPARTRVYGYILTALWAGASGTPAVLGLELDCERPAEARAFIAQLRLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRAAEQRRFEGMWEEQRREIEAKYREVLGAFEQRCRAIIS
Ga0326726_102259983	3300033433	Peat Soil	LPAKTRVYGHILTILWIGGSGAAGTPAALAPELDCERPAEARAFIAKLQLAEIEGAEDIHRAAMWDAFGRCPAGDTGGPCRREEQRRFESQWEEQRRAIEAKYRQVLGAFEQRCRALISLIEPGIRAAS
Ga0316620_101681293	3300033480	Soil	LPAKTRVYGYILTALWAGASGTPAVSGPELDCERPAEARAFIARLRLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRSAEQRRFEELWEQQRREIEAKYREVLGAFELRCRAIISLIR
Ga0316628_1003589532	3300033513	Soil	LPAKTRVYGYILTALWAGGAGAAGSPAAPALDLDCERPAEARAFIALLQLAEIEGAEDIHRAAMWEAFGRCPAGDAGGPCRSQEQRRFEGRWEEQRKAIEAKYRQVLRDFEERCRSVIAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters