Basic Information | |
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Family ID | F094331 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 60 residues |
Representative Sequence | MRRLLFLALLGGLAWWFLGRRRGEVESSATIGYADGSSVTLAAGSPELDRLLLIAAEART |
Number of Associated Samples | 71 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 79.25 % |
% of genes near scaffold ends (potentially truncated) | 23.58 % |
% of genes from short scaffolds (< 2000 bps) | 85.85 % |
Associated GOLD sequencing projects | 67 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (66.038 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (35.849 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.453 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (41.509 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 39.77% β-sheet: 9.09% Coil/Unstructured: 51.14% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater And Sediment Freshwater Lake Sediment Freshwater Sediment Sediment Anoxic Zone Freshwater Freshwater Microbial Mat Sediment Wetland Sediment Freshwater Wetlands Groundwater Freshwater Estuarine Natural And Restored Wetlands Wetland Sediment (Intertidal) Groundwater Sediment Watersheds Soil Serpentine Soil Glacier Forefield Soil Soil Untreated Peat Soil Natural And Restored Wetlands Soil Fen Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LWAnN_01533290 | 2088090009 | Freshwater Sediment | MRKLFSLALAGALAWWFFVRPRKAGRRSATIGYADGSSVTLEAGSPELDRLLQIAAEATT |
LWAnNN_00343700 | 2088090013 | Freshwater Sediment | MRRLLFLALLAGLAWWFLGRRRGEVESSATIGYADGSSVTLAAGSPELDRLLLIAAEART |
JGIcombinedJ13530_1019199722 | 3300001213 | Wetland | MRKLLFLAVVGALAWWFLGRREDESGESATIGYADGSAVTLDAGSPELDRLLQLAAEARAR* |
JGIcombinedJ13530_1019663511 | 3300001213 | Wetland | MRKLLLLVVIGAVAWWFLGRREDEVSETATIGYEDGSSVTLDAGSPELDRLLQVAGEAGPR* |
Ga0055486_101334252 | 3300004071 | Natural And Restored Wetlands | MRRLLFLALVGGLVWWFLGRSRSGERIGATIGYADGSSVTLAEGSPEL |
Ga0063454_1012821222 | 3300004081 | Soil | MRKLFLLALLAGAAWWFVNRGRGDNVSGATIGYVDGSSVTLDAGSPELDRLVEIASNATAS* |
Ga0062383_102617621 | 3300004778 | Wetland Sediment | MRRLFTVALIAGLAWWFLGRRRTDAESSATIGYADGSSVTLDAGSPELDRLLQIAAEARAA* |
Ga0062380_100805702 | 3300004779 | Wetland Sediment | MRRLLSLALIGWLVWWLLGRRRAGVQTGATIGYADGSSVILDAGSPELDRLLQIAAGARAA* |
Ga0068996_100765012 | 3300005218 | Natural And Restored Wetlands | MRRLIPLALLAGLAWWFLGRRRGHAAGSATIGFLDGSSVTLDAKSPELERLLQIAAGARVR* |
Ga0070678_1013281602 | 3300005456 | Miscanthus Rhizosphere | SVRPMRRLVLLAVLGAIAWWFIDRRREAAQGGATIGYADGSSVTLEAGSPELDRLLLVVAQATKP* |
Ga0074213_1497242 | 3300005488 | Sediment | MPMRRLFSLALIGGLAWWFFDRRRETGQCSATIGYADGSSVTLEEGSPELDRLLQIAAEATIT* |
Ga0074472_108529714 | 3300005833 | Sediment (Intertidal) | MRRLLSLALIGGLVWWFLGRRRIGVQTGATIGYADGSSVILDAGSPELERLLQIAAGARAA* |
Ga0075028_1006377391 | 3300006050 | Watersheds | RKQSPPMRRLLSLAALAGLVWLVLRRRRSSGRETATIGYADGSSVTLEAGSPELERLLLIARQATAA* |
Ga0075017_1000698162 | 3300006059 | Watersheds | MRKLVWLAVIGGLAWWFLGRREAEPEETVTIGYADGSAVTLEAGAPEFDRLLQIAAEATAG* |
Ga0075015_1000501013 | 3300006102 | Watersheds | MRKLVWLAVIGGLAWWFLGRREAEPEETVTIGYADGSAVTLEAGAPEFDRLLQIAAGATAG* |
Ga0075018_105476321 | 3300006172 | Watersheds | GRKQSPPMRRLLSLAALAGLVWLVLRRRRSSGRETATIGYADGSSVTLEAGSPELERLLLIARQATAA* |
Ga0075021_103699722 | 3300006354 | Watersheds | MRRLLSLAALAGLVWWLLGRRRSSGRETVTIGYADGSSVTLEAGSPLLERLLAIATQATAA* |
Ga0075021_106397982 | 3300006354 | Watersheds | RRLLSLAALAGLVWLVLRRRRSSGRETATIGYADGSSVTLEAGSPELERLLLIARQATAA |
Ga0105044_104690953 | 3300007521 | Freshwater | MRRLLSLAAIGVGVWWFLGRRSTPSTARVTIGYADGSSVTLDAGSPELDRLTSIAAGASAP* |
Ga0113563_105331743 | 3300009167 | Freshwater Wetlands | MRRLAVLALIGGIARWFLGRRGCEPEESATIGYADGSSVTLDAGSPELDGLLQIAAGALRT* |
Ga0113563_105659492 | 3300009167 | Freshwater Wetlands | MRRLLALALIGGLVWWLLGRRRADVESSATIGYADGSSVILDAGSPELDRLLQIAAGARAA* |
Ga0105248_128044552 | 3300009177 | Switchgrass Rhizosphere | MRRLVILALIAGAAWWFLTRDRGEDEGGATIGYADGSSVTLEAGSPELDRLLSIAAEATAS* |
Ga0114942_10676321 | 3300009527 | Groundwater | TMRRLLTLAAIGAAVWWLLGRRRATSLSRATIGYADGSSVTLEDGSPELERLVRVAAESTAA* |
Ga0126305_111456761 | 3300010036 | Serpentine Soil | MRRLVLLALAGAVAWWFLNRRQAEPEERVTIGYADGSAVTLDPGSPELDRLLQIAAGARAR* |
Ga0157216_101013113 | 3300012668 | Glacier Forefield Soil | MRRLLALAAIGAAVWWLLGRREKPSTTRVTIGYADGSSVTLDEGSPELDRLTSIAAEATTP* |
Ga0164309_107204562 | 3300012984 | Soil | MRRLAVLALIAGAAWWFLTRDRGEEPGGVTIGYADGSSITLDEGSPELDRLLQIAAGATAS* |
Ga0075343_10330083 | 3300014317 | Natural And Restored Wetlands | AAIGAAVWWFITRRGTSNADGATIGYEDGSSVTLDAGSPELERLLAIAAGAAAP* |
Ga0075355_11259842 | 3300014322 | Natural And Restored Wetlands | MRKLLLLAVVGAVAWWFLGRREDEPSETATIGYADGSSVTLDAGSPELDRLLQVAVEAGAR* |
Ga0167665_10406582 | 3300015163 | Glacier Forefield Soil | MPMRRLFSFALAGGLAWWFFGRRRETGRRSATIGYADGSSVTLEAGSPELDRLLQIAAEATTR* |
Ga0167667_10008428 | 3300015189 | Glacier Forefield Soil | MRRLLSLAAIGAAVWWLLGRRSKPSTARITIGYADGSSVALDTGSPEFDRLAAIAAEAAAP* |
Ga0163144_102245965 | 3300015360 | Freshwater Microbial Mat | MRKLLSLAAIGAAVWWLLGRRSKPSTGRVTIGYADGSSVTLEAGSPELDRLTAIATEAATP* |
Ga0184628_106050472 | 3300018083 | Groundwater Sediment | MRRLAVLAIIAGAAWWFLLRRSEDQGGATIGYADGSSVTLEVGSPELDRLLQIAAEATRS |
Ga0190271_100439954 | 3300018481 | Soil | MRRLLSLAAIGAAVWWLLGRRRSASVNRATIGYSDGSSVTLESGSPDLERLVQIAAESTG |
Ga0163153_100093718 | 3300020186 | Freshwater Microbial Mat | MRKLLSLAAIGAAVWWLLGRRSKPSTGRVTIGYADGSSVTLEAGSPELDRLTAIAAEAAT |
Ga0194051_10429351 | 3300021470 | Anoxic Zone Freshwater | LSLAAVGASVWWLLGRRRKADPSRATIGYADGSSVTLEVGSPDLERLVQIALGASAP |
Ga0194051_12407802 | 3300021470 | Anoxic Zone Freshwater | MRRLLSVAAIGASVWWLLGRRRKADPSRATIGYADGSSVTLEVGSPDLERL |
Ga0210334_100278852 | 3300021859 | Estuarine | MRRLLSLALVGWLVWWLLGRRRTGVQTGATIGYADGSSVILDAGSPELDRLLQIAAGARA |
Ga0210117_10283712 | 3300025985 | Natural And Restored Wetlands | MRRLIPLALLAGLAWWFLGRRRGHAAGSATIGFLDGSSVTLDAKSPELERLLQIAAGARV |
Ga0207658_121821442 | 3300025986 | Switchgrass Rhizosphere | MRKLAVLALLAAAAWWFVNRDRSEDDVGTTIGYADGSSVTLDPGSPELDRLVQIASGATA |
Ga0209797_100387022 | 3300027831 | Wetland Sediment | VARLFLVAVVGGLVWWFLGRRRSETTPGVTIGYADGSSVTLEQESPELERLLGIAAEAVA |
Ga0209797_100553643 | 3300027831 | Wetland Sediment | MRRLLSLALIGWLVWWLLGRRRAGVQTGATIGYADGSSVILDAGSPELDRLLQIAAGARA |
Ga0209798_102989772 | 3300027843 | Wetland Sediment | MRRLFTVALIAGLAWWFLGRRRTDAESSATIGYADGSSVTLDAGSPELDRLLQIAAEARA |
Ga0209023_101254773 | 3300027870 | Freshwater And Sediment | MPMPMRRLFSLALAGGLAWWFFGRRRETGRRSATIGYADGSSVTLEAGSPELDRLLQIAAEAQTR |
Ga0209023_108370781 | 3300027870 | Freshwater And Sediment | MRRLLVLAAIAGAAWWVLSRRGTTSADRVTLGYADGSSVTLEPGSPERDRLLQVAAEAAG |
Ga0209068_102925122 | 3300027894 | Watersheds | MRRLLSLAALAGLVWWLLGRRRSSGRETVTIGYADGSSVTLEAGSPLLERLLAIATQATA |
Ga0209254_101613603 | 3300027897 | Freshwater Lake Sediment | MRRLLFLALIGGLVWWLLGRRRTGVQTGATIGYVDGSSVILEAGSPELDRLLQIAAGARA |
Ga0209048_100367904 | 3300027902 | Freshwater Lake Sediment | MRRLLWLAVIGGLAWWFLGRRQDEPEETVTIGYADGSAVTLEAGAPELDRLLQIAAEARA |
Ga0209069_103790602 | 3300027915 | Watersheds | MRRLAVLALIAGAAWWFLNRGRGEEQGGATIGYADGSSVTLDVGSPELDRLLQIAAEATA |
Ga0268266_110741092 | 3300028379 | Switchgrass Rhizosphere | MRKLAVLALLAAAAWWFVNRDRSEDDVGTTIGYADGSSVTLDTGSPELERLLQIAAGATS |
Ga0302264_10513093 | 3300028732 | Fen | MRKLLFLAVIGGLAWWFLGRRVDEPGDTATIGYADGSAVTLDAGSPELDRLLQIAAEARA |
Ga0302264_11615362 | 3300028732 | Fen | LALVAGAAWWFLNRGSGEEPGGATIGYADGSSVTLDVGSPELERLLQIAAAAGEP |
Ga0302258_11423381 | 3300028770 | Fen | MRRLAVLALLAAAAWWLVNRGRDDDAGGATIGYADGSSVTLDPGSPELERLLQIAAEATR |
Ga0307281_102255351 | 3300028803 | Soil | MRRLLLLALIGGLAWWFLGRRRSGAQRSATIGYADGSAVTLEPGSPELDRLLQIAGEAPL |
Ga0311347_107409151 | 3300029923 | Fen | RVSPMRKLLFLAVIGGLAWWFLGRRVDEPGDTATIGYADGSAVTLDAGSPELDRLLQIAAEARAR |
Ga0311332_114942031 | 3300029984 | Fen | MRRILILALAGGIAWWFVARRGDSEQPSVTIGYADGSAVTLDTGSPELDRLLRIAAEAAT |
Ga0311336_107738523 | 3300029990 | Fen | MRRLLVLALAGGIAWWFYARRDDSEQAGVTIGYADGSAVRLDAGSPELDRLLRIAAEAAT |
Ga0311337_111462161 | 3300030000 | Fen | RRRTPTMRRLAVLALLAAAAWWLVNRGRDDDAGGATIGYADGSSVTLDPGSPELERLLQIAAEATRS |
Ga0311348_112970651 | 3300030019 | Fen | LFLAVIGGLAWWFLGRRVDEPGDTATIGYADGSAVTLDAGSPELDRLLQIAAEARAR |
Ga0311333_102995323 | 3300030114 | Fen | MRRLAVLALLAAAAWWLDNRGRDDDAGGATIGYADGSSVTLDPGSPELERLLQIAAEATR |
Ga0311333_115419932 | 3300030114 | Fen | MRRLALLALVAGAAWWFLNRGSGEEPGGATIGYADGSSVTLDVGSPELERLLQIAAAAGE |
Ga0311333_116763772 | 3300030114 | Fen | MRKLLFFAVIGGLAWWFLGRRDGEPGAAATIGYADGSAVTLDAGSPELDRLLQIAAEARA |
Ga0311335_103435781 | 3300030838 | Fen | GLAWWFLGRRVDEPGDTATIGYADGSAVTLDAGSPELDRLLQIAAEARAR |
Ga0302323_1030749971 | 3300031232 | Fen | LLVLALAGGIAWWFYARRDDSEQAGVTIGYADGSAVRLDAGSPELDRLLRIAAEAATR |
Ga0302321_1001920783 | 3300031726 | Fen | MRRLALLALVAGAAWWFLNRGGGEEPGGATIGYADGSSVTLDVGSPELERLLQIAAAAGE |
Ga0302321_1013485542 | 3300031726 | Fen | MRRLAVLAGLAGLTWWLLGRRRGQEAPSTATIGYADGSSVTLAAGTPELERR |
Ga0302321_1027820882 | 3300031726 | Fen | MRRLLILALAGGIAWWFVARRGDSEQPSVTIGYADGSAVTLDTGSPELDRLLRIAAEAAT |
Ga0315290_101073153 | 3300031834 | Sediment | MPMRKLFSLALAGALAWWFFVRPRKAGRRSATIGYADGSSVTLEAGSPELDRLLQIAAEATTA |
Ga0315290_101569902 | 3300031834 | Sediment | MPMRRLFSLALVGGLAWWFFGRRRETEQRRATIGYADGSSVTLDPGSPELDRLLQIAAEATTA |
Ga0315290_102769932 | 3300031834 | Sediment | MRRLLSLALVGGLVWWFLGRRRTGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEALE |
Ga0315290_105152712 | 3300031834 | Sediment | MRRLLSLAAIGAVVWWLLGRRSKPSTARVTIGYADGSSVTLDAGSPELDRLVAIAAETAA |
Ga0315290_106047332 | 3300031834 | Sediment | MRRLLFLALVGVLGWWFLGRRRAGVESSATIGYSDGSSVTLDAGSPELDRLLLIAGEARA |
Ga0315297_102742074 | 3300031873 | Sediment | VSISMPMRKLFSLALAGALAWWFFVRPRKAGRRSATIGYADGSSVTLEAGSPELDRLLQIAAEATTA |
Ga0315297_105568453 | 3300031873 | Sediment | MRRLLSLALVGGLVWWFLGRRRAGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEAVE |
Ga0315297_115919352 | 3300031873 | Sediment | MRRLLFLALVGVLGWWFLGRRRAGVESSATIGYSDGSSVTLDAGSPELD |
Ga0315278_100940512 | 3300031997 | Sediment | MPMRRLFSLALIGGLAWWFFDRRRETGQCSATIGYADGSSVTLEEGSPELDRLLQIAAEATIT |
Ga0315278_106393382 | 3300031997 | Sediment | MRRLFSFALVGGLAWWFFGRRREAEKRSATIGYADGSSVTLEVGSPELDRLLQIAAEATA |
Ga0315278_107647703 | 3300031997 | Sediment | MRRLFSLLLVGGLAWWFLGRRRHEAGRGATIGYTDGSSVTLDVGSPELDRLLQIATEATT |
Ga0315278_112862081 | 3300031997 | Sediment | ALIGGLVWWFLGRRRAGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEALEA |
Ga0315278_117883252 | 3300031997 | Sediment | MRKLFWLALVAGLAWWFLGRRRNVVERGATIGYTDGSSVTLDAGSPELDRMLQIAAEATT |
Ga0315272_102258252 | 3300032018 | Sediment | MPMSRLFSLALVGGLAWWFFGRRRETEQRRATIGYADGSSVTLDPGSPELDRLLQIAAEATTA |
Ga0315292_103779032 | 3300032143 | Sediment | MPMRKLFSLALVGGLAWWFFGRRRETGRCTATIGYADGSSVTLEEGSPELDRLLQIAAEATTT |
Ga0315292_114692831 | 3300032143 | Sediment | MPMRRLFSLALVGGLAWWFFGRRRETEQRRATIGYADGSSVTLDPGSPELDRLLQIAAEATT |
Ga0315295_104519193 | 3300032156 | Sediment | LLSLALVGGLVWWFLGRRRAGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEALEA |
Ga0315281_102650984 | 3300032163 | Sediment | MRRLLSLAAIGAAVWWLFGRRGQADPSRVTIGYADGSSVTLEAGSPELERLLQIAAGAAT |
Ga0315281_104335762 | 3300032163 | Sediment | MRRLFSLLLVGGLAWWFLGRRRHEAGRGATIGYTDGSSVTLDVGSPELDRLLQIAAGATT |
Ga0315283_100356176 | 3300032164 | Sediment | MRRLLSLALIGGFVWWFLGRRRAGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEALE |
Ga0315283_101061323 | 3300032164 | Sediment | MRRLLSLALIGGLVWWLLGRRRTGAPTGATIGYADGSSVILDAGSPELDRLLQIAAGARA |
Ga0315283_101167163 | 3300032164 | Sediment | MRRVLFLALLAGLAWWFLGRRRGEVESSATIGYADGSSVTLAAGSPELDRLLLIAAEART |
Ga0315283_102660403 | 3300032164 | Sediment | MRRLFSLLLVGGLAWWFLGRRRHEAGRGATIGYTDGSSVTLDVGSPELDRLLQIATAATT |
Ga0315283_124420472 | 3300032164 | Sediment | MRRLLVLAAIAGAAWWVLSRRSTTSADRVTLGYADGSSVTLEPGSPERDRLLQVAAEAAG |
Ga0315268_125983491 | 3300032173 | Sediment | GLVWWFLGRRRAGVESSATIGYSDGSSVTLDAGSPELDRLLLIAGEARAA |
Ga0315276_102760502 | 3300032177 | Sediment | MRKLLSLAAIGAVVWWLLGRRSKPSTARVTIGYADGSSVTLDAGSPELDRLVAIAAETAA |
Ga0315276_122286252 | 3300032177 | Sediment | MRRLLFLALLGGLAWWFLGRRRGEVESSATIGYADGSSVTLAAGSPELDRLLLIAAEART |
Ga0315271_102418962 | 3300032256 | Sediment | MRRLLSLAAIGAVVWWLLGRRSKPSTARVTIGYADGSSVTLDAGSPELDRLAAIAAETAA |
Ga0315271_102520593 | 3300032256 | Sediment | MRRFLSLAAIAAAAWWLIGRRRSDANSATVTIGYADGSSVTLEPGSPELDRLAQVAAEAAPR |
Ga0315271_114812932 | 3300032256 | Sediment | MRKLFFLALIGGLVWWFLGRRRAGDEGGATIGYADGSSVTLAAGSPELDRLLLIAKPLTT |
Ga0315270_102438953 | 3300032275 | Sediment | MRKLLSLALIGGLVWWFLGRRRAGVESSATIGYADGSSVTLDAGSPELDRLLLIAGEARA |
Ga0315286_108809793 | 3300032342 | Sediment | MRRLLSLAAIGAVVWWLLGRRSKPSTARVTIGYADGSSVTLDAGSPELDRLVAI |
Ga0315286_112698182 | 3300032342 | Sediment | MRRLFSLALIGGLAWWFFDRRRETGQCSATIGYADGSSVTLEEGSPELDRLLQIAAEATI |
Ga0315287_101661483 | 3300032397 | Sediment | MRRLLVLAAIAGAAWWVLSRRNTTSADRVTLGYADGSSVTLEPGSPERDRLLQVAAEAAD |
Ga0315287_109045681 | 3300032397 | Sediment | RRTGAPTGATIGYADGSSVILDAGSPELDRLLQIAAGARAS |
Ga0315287_109532322 | 3300032397 | Sediment | MRKLLSLALIGGLVWWFLGRRRAGVENSATIGYADGSSVTLDVGSPELDRLLLIAKPLTT |
Ga0315287_118731072 | 3300032397 | Sediment | MRRLFSLALIGGLAWWFLGRRRTDGESSATIGYADGSSVTLAPGSPELDRLLRIAAEARA |
Ga0315287_122029062 | 3300032397 | Sediment | MRRLLSLALIGGLVWWLLGRRRTGAPTGATIGYADGSSVILDAGSPELDRLLQIAAGAR |
Ga0316622_1028702552 | 3300033416 | Soil | MRRLALLALIGAVAWWFVGRRRCEPEESATIGYADGSAVTLDPGSPELDGLLQIAAGALR |
Ga0370498_102362_394_579 | 3300034155 | Untreated Peat Soil | MRKVIFLAVVGGLAWWLFGRRSATTRLGATIGYADGSSVTLDSGSPELDRLLQIAAGATR |
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