Metagenome / Metatranscriptome Family F094178

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094178
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	62 residues
Representative Sequence	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Number of Associated Samples	81
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.08 %
% of genes near scaffold ends (potentially truncated)	21.70 %
% of genes from short scaffolds (< 2000 bps)	75.47 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.302 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (50.943 % of family members)
Environment Ontology (ENVO)	Unclassified (43.396 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.887 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.11% β-sheet: 0.00% Coil/Unstructured: 38.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF12867	DinB_2	30.19
PF00753	Lactamase_B	8.49
PF13561	adh_short_C2	6.60
PF07045	DUF1330	5.66
PF07813	LTXXQ	3.77
PF02566	OsmC	2.83
PF00106	adh_short	1.89
PF02826	2-Hacid_dh_C	1.89
PF00248	Aldo_ket_red	0.94
PF01638	HxlR	0.94
PF04366	Ysc84	0.94
PF02781	G6PD_C	0.94
PF04055	Radical_SAM	0.94
PF02954	HTH_8	0.94
PF12680	SnoaL_2	0.94
PF08447	PAS_3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	15.09
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	5.66
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.83
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.83
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.60 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.60 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.70 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.72 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.77 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.72 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.89 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001166\|JGI12694J13545_1002527	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300002245\|JGIcombinedJ26739_101597202	Not Available	549	Open in IMG/M
3300002907\|JGI25613J43889_10172871	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300002914\|JGI25617J43924_10020421	All Organisms → cellular organisms → Bacteria	2286	Open in IMG/M
3300002914\|JGI25617J43924_10072274	Not Available	1260	Open in IMG/M
3300002917\|JGI25616J43925_10136295	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	989	Open in IMG/M
3300005167\|Ga0066672_10217829	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300005541\|Ga0070733_10138209	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300005542\|Ga0070732_10072667	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300005542\|Ga0070732_10494454	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300006028\|Ga0070717_10024025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4836	Open in IMG/M
3300006176\|Ga0070765_100112111	All Organisms → cellular organisms → Bacteria	2377	Open in IMG/M
3300006893\|Ga0073928_10684380	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300007255\|Ga0099791_10129555	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1172	Open in IMG/M
3300007258\|Ga0099793_10031138	All Organisms → cellular organisms → Bacteria	2267	Open in IMG/M
3300007258\|Ga0099793_10268112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	826	Open in IMG/M
3300007265\|Ga0099794_10306533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	823	Open in IMG/M
3300007788\|Ga0099795_10204900	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	833	Open in IMG/M
3300009088\|Ga0099830_10423512	Not Available	1079	Open in IMG/M
3300009089\|Ga0099828_11516056	Not Available	591	Open in IMG/M
3300009143\|Ga0099792_10471117	Not Available	781	Open in IMG/M
3300009143\|Ga0099792_10557312	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300010159\|Ga0099796_10013016	All Organisms → cellular organisms → Bacteria	2366	Open in IMG/M
3300010159\|Ga0099796_10251060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300010379\|Ga0136449_101795687	Not Available	918	Open in IMG/M
3300011120\|Ga0150983_12947339	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300011269\|Ga0137392_10553271	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300012189\|Ga0137388_10137248	All Organisms → cellular organisms → Bacteria → Acidobacteria	2149	Open in IMG/M
3300012189\|Ga0137388_10336824	Not Available	1389	Open in IMG/M
3300012202\|Ga0137363_10270138	All Organisms → cellular organisms → Bacteria → Proteobacteria	1387	Open in IMG/M
3300012202\|Ga0137363_11035476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300012203\|Ga0137399_10742905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300012203\|Ga0137399_11531746	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012205\|Ga0137362_10950052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	733	Open in IMG/M
3300012205\|Ga0137362_11434338	Not Available	577	Open in IMG/M
3300012361\|Ga0137360_10764634	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300012362\|Ga0137361_11758917	Not Available	539	Open in IMG/M
3300012363\|Ga0137390_11344977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	660	Open in IMG/M
3300012582\|Ga0137358_10079055	All Organisms → cellular organisms → Bacteria → Proteobacteria	2212	Open in IMG/M
3300012683\|Ga0137398_10260237	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300012683\|Ga0137398_10983130	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012683\|Ga0137398_11151773	Not Available	532	Open in IMG/M
3300012685\|Ga0137397_10096561	All Organisms → cellular organisms → Bacteria → Acidobacteria	2162	Open in IMG/M
3300012917\|Ga0137395_10087168	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300012917\|Ga0137395_10129268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1710	Open in IMG/M
3300012917\|Ga0137395_10228378	Not Available	1303	Open in IMG/M
3300012918\|Ga0137396_10556110	Not Available	850	Open in IMG/M
3300012922\|Ga0137394_10286089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1409	Open in IMG/M
3300012923\|Ga0137359_10287890	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300012923\|Ga0137359_10440184	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300012923\|Ga0137359_10588555	Not Available	977	Open in IMG/M
3300012923\|Ga0137359_10750302	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300012924\|Ga0137413_10233707	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300012925\|Ga0137419_10252138	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300012927\|Ga0137416_11335481	Not Available	648	Open in IMG/M
3300012929\|Ga0137404_11787038	Not Available	572	Open in IMG/M
3300015241\|Ga0137418_10008290	All Organisms → cellular organisms → Bacteria	9554	Open in IMG/M
3300015264\|Ga0137403_10551226	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300020170\|Ga0179594_10383007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	534	Open in IMG/M
3300020199\|Ga0179592_10149718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1067	Open in IMG/M
3300020199\|Ga0179592_10342491	Not Available	659	Open in IMG/M
3300020579\|Ga0210407_10227648	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300020580\|Ga0210403_10482348	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300020581\|Ga0210399_10552674	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300020582\|Ga0210395_10030853	All Organisms → cellular organisms → Bacteria	3929	Open in IMG/M
3300020582\|Ga0210395_10893148	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300020583\|Ga0210401_10641385	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300020583\|Ga0210401_10767880	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300021086\|Ga0179596_10606020	Not Available	555	Open in IMG/M
3300021404\|Ga0210389_10203898	Not Available	1543	Open in IMG/M
3300021432\|Ga0210384_11043150	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300021474\|Ga0210390_10095755	All Organisms → cellular organisms → Bacteria	2475	Open in IMG/M
3300022508\|Ga0222728_1114926	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300024330\|Ga0137417_1126210	All Organisms → cellular organisms → Bacteria → Acidobacteria	1366	Open in IMG/M
3300026320\|Ga0209131_1005249	All Organisms → cellular organisms → Bacteria	8464	Open in IMG/M
3300026446\|Ga0257178_1058810	Not Available	510	Open in IMG/M
3300026467\|Ga0257154_1010465	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300026482\|Ga0257172_1078219	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300026489\|Ga0257160_1022510	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300026508\|Ga0257161_1033658	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300026514\|Ga0257168_1011856	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1680	Open in IMG/M
3300026514\|Ga0257168_1065658	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300026551\|Ga0209648_10039772	All Organisms → cellular organisms → Bacteria	4070	Open in IMG/M
3300026551\|Ga0209648_10362677	Not Available	986	Open in IMG/M
3300026557\|Ga0179587_10280598	Not Available	1070	Open in IMG/M
3300026557\|Ga0179587_10937644	Not Available	570	Open in IMG/M
3300027652\|Ga0209007_1004372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3904	Open in IMG/M
3300027671\|Ga0209588_1092096	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300027867\|Ga0209167_10025305	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300027903\|Ga0209488_10023678	All Organisms → cellular organisms → Bacteria → Proteobacteria	4460	Open in IMG/M
3300028047\|Ga0209526_10246946	Not Available	1222	Open in IMG/M
3300028536\|Ga0137415_10054876	All Organisms → cellular organisms → Bacteria	3852	Open in IMG/M
3300028536\|Ga0137415_10097813	All Organisms → cellular organisms → Bacteria	2787	Open in IMG/M
3300028906\|Ga0308309_10225760	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300029636\|Ga0222749_10037355	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300030991\|Ga0073994_10023579	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300031057\|Ga0170834_100079798	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031231\|Ga0170824_103420533	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031446\|Ga0170820_13717702	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300031715\|Ga0307476_10533731	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031718\|Ga0307474_10011100	All Organisms → cellular organisms → Bacteria	6524	Open in IMG/M
3300031718\|Ga0307474_10018957	All Organisms → cellular organisms → Bacteria	5001	Open in IMG/M
3300031753\|Ga0307477_10500061	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031754\|Ga0307475_10013075	All Organisms → cellular organisms → Bacteria	5606	Open in IMG/M
3300031754\|Ga0307475_11272579	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031823\|Ga0307478_10054580	All Organisms → cellular organisms → Bacteria	2973	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.06%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.06%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.51%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.30%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.60%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	50.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12694J13545_10025273	3300001166	Forest Soil	MEKHIEHKKAKDEQGLSDREIWRKIRYLDPDIKRIDSVFMITVLAILSILGVVVALLYCRGL*
JGIcombinedJ26739_1015972022	3300002245	Forest Soil	MEKHIEHKKAKDEQGLSDREIWRKIRYLDPDIKRIDSVFMITVLAILSILGVVVALLYCR
JGI25613J43889_101728712	3300002907	Grasslands Soil	MEKHIEHNKAKNEQSLSDREIWWKIRYLDPDIKRSDGVLIVTVLAILSIVGVVVALLYSRGL*
JGI25617J43924_100204211	3300002914	Grasslands Soil	MGNNIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIINVLAILAIVGVVVALLYSRGL*
JGI25617J43924_100722744	3300002914	Grasslands Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIA
JGI25616J43925_101362951	3300002917	Grasslands Soil	MGNNIERKKATDEQGLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVALLYSRGL*
Ga0066672_102178293	3300005167	Soil	MGNNIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0070733_101382094	3300005541	Surface Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSDCMVIITVLTILAIVGIVVALLYGRGL*
Ga0070732_100726672	3300005542	Surface Soil	MGKHIEHKKATDEQCLSDQEIWCKIRYLDPDIKRSDSVVIITVLAILAIVGVVGALLYGRGL*
Ga0070732_104944542	3300005542	Surface Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDTKRSDSVVIITVLAILAIVGIAVALLYGRGL*
Ga0070717_100240253	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MGKNIEHKKTTDEQGLSDQDIWRKIRYLDPDIKRSDGVVTITVLAILAIVGTVVALLYSRGL*
Ga0070765_1001121112	3300006176	Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDTKRSDSVVIITVLAILAIAGIVVALLYGRGL*
Ga0073928_106843801	3300006893	Iron-Sulfur Acid Spring	MEKHIEHKKAKHEQSLSDREIWWKIRYLDPGIKRSDSVVIITVLAILSIVGVVVALLYSRGL*
Ga0099791_101295551	3300007255	Vadose Zone Soil	MGNNIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL*
Ga0099793_100311382	3300007258	Vadose Zone Soil	MERHIEHKKTKDEQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVAWLYSRGL*
Ga0099793_102681122	3300007258	Vadose Zone Soil	MRLGTGASGRRGFNMGKNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL*
Ga0099794_103065332	3300007265	Vadose Zone Soil	MRLGTGASGRRGFDMGKNIEHKKATDERGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL*
Ga0099795_102049001	3300007788	Vadose Zone Soil	MGNNIEHKKATNEQGLSDQEVWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0099830_104235122	3300009088	Vadose Zone Soil	MGKHIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0099828_115160561	3300009089	Vadose Zone Soil	MGNNIEHKKAIDEQGLSDPEIWWIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0099792_104711171	3300009143	Vadose Zone Soil	MEKHIEHKKAKDEQRLSDREIWWKIRYLDPDIKCSDSVVIITVLAIVSIV
Ga0099792_105573122	3300009143	Vadose Zone Soil	MGNNIEHKKATNEQGLSDQEICWKIRYLDPDIKRSDSVVIINVLAILAIVGVVVALLYSRGL*
Ga0099796_100130162	3300010159	Vadose Zone Soil	MEKHIEHKKALDEKRLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL*
Ga0099796_102510601	3300010159	Vadose Zone Soil	MGKNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL*
Ga0136449_1017956872	3300010379	Peatlands Soil	MGKHIEHKKATEEQSLSDQEIWWKIRYLDQDIKRSDSEVIITVLAILAIVGIVVALLYGRGL*
Ga0150983_129473391	3300011120	Forest Soil	MEKHIEHKQAKDEQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVAFLYSRGL*
Ga0137392_105532711	3300011269	Vadose Zone Soil	MGNNIERKKATDEQGLSDPEIWWKIRYLDPDIKRSDGVLIITVLAILSIVGVVVALLYGRGL*
Ga0137388_101372483	3300012189	Vadose Zone Soil	HKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0137388_103368242	3300012189	Vadose Zone Soil	MGKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVFALLYSRGL*
Ga0137363_102701383	3300012202	Vadose Zone Soil	MGKNIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVALLYSRGL*
Ga0137363_110354762	3300012202	Vadose Zone Soil	GAWRFNMGNNIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIINVLAILAIVGVVVALLYSRGL*
Ga0137399_107429051	3300012203	Vadose Zone Soil	MGRPIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0137399_115317462	3300012203	Vadose Zone Soil	MEKHIEHKKAKDEQRLSDREIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0137362_109500522	3300012205	Vadose Zone Soil	MGKNIEHKEATNEQGLSDQEIWWKIRYLDPDIKRSDSAVIITVLAVVAIVGVVLALLYSRGL*
Ga0137362_114343381	3300012205	Vadose Zone Soil	MEKHIEHKQAKDEQSLSDREIWWKIRYLDPDIKCGDSVVIITVLAIVSIVGVLVALLYSRGL*
Ga0137360_107646341	3300012361	Vadose Zone Soil	MEKYIEHKKAKNDHSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILCIVGVVIALFYSRGL*
Ga0137361_117589172	3300012362	Vadose Zone Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0137390_113449772	3300012363	Vadose Zone Soil	MGKNIEHKKATDEQGLSDQTIWWKIRYLDPDIKRSDSAVIIITALAIVAIVGVVVALLYSRGL*
Ga0137358_100790553	3300012582	Vadose Zone Soil	PIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVISTVTAIFAIVGVVVALLYSRGL*
Ga0137398_102602372	3300012683	Vadose Zone Soil	MGNNIEHKKATNEQGPSDQEIWWKIRYLDPDIKRSDSVVIINVLAILAIVGVVVALLYSRGL*
Ga0137398_109831302	3300012683	Vadose Zone Soil	EQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSLVGIVVALLYRRGL*
Ga0137398_111517731	3300012683	Vadose Zone Soil	KNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVLGILAIVGVVVGLLYNRGL
Ga0137397_100965611	3300012685	Vadose Zone Soil	IEHKKATDEQGLSDQEIWWKIRYLDPDIKRSNSVVIITVLAILSIVGAVVALLYSRGS*
Ga0137395_100871682	3300012917	Vadose Zone Soil	MGDNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVALLYSRGL*
Ga0137395_101292681	3300012917	Vadose Zone Soil	MGKNIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVAL
Ga0137395_102283782	3300012917	Vadose Zone Soil	MEKHIEHKKALDEKRLSDREIWWKIRYLDPDIKRSDSVDIITVLAILSIVGVVVALLYGRGL*
Ga0137396_105561102	3300012918	Vadose Zone Soil	FVWASWRFNMEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0137394_102860893	3300012922	Vadose Zone Soil	MGRPIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVISTVTAIFAIVGVVVALLYSRGL*
Ga0137359_102878902	3300012923	Vadose Zone Soil	MRLGTGASGRRGFNMGKNIVHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL*
Ga0137359_104401841	3300012923	Vadose Zone Soil	MGNNIEHKKVTNEQGLSDQEICWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0137359_105885552	3300012923	Vadose Zone Soil	MEKHIEHNKAKNEQSLSDREIWWKIRYLDPDMKRSDSVVIITVLAILSIVGVVVALLYSRGL*
Ga0137359_107503021	3300012923	Vadose Zone Soil	TLRGAWRFNMGNNIEHKKATNEQRLSYQEIWWKIRYLDPDIKRSDSVVTITVTAIFTIVGVVVALLYSRGL*
Ga0137413_102337072	3300012924	Vadose Zone Soil	MEKHIEHKKAKGEQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL*
Ga0137419_102521381	3300012925	Vadose Zone Soil	EQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0137416_113354811	3300012927	Vadose Zone Soil	MEKHIEHKKAKDEQSLSDQEIWWQIRYLDSDIKRSDSVVIITVLAILLIVGVVIASLYSRGL*
Ga0137404_117870381	3300012929	Vadose Zone Soil	MGKNIEHKEATDEQSLSDQEIWWKIRYLDPDIKRSDSAVIISVLAIVAIVGVVLALLYSRGL
Ga0137418_100082907	3300015241	Vadose Zone Soil	MGKNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL*
Ga0137403_105512261	3300015264	Vadose Zone Soil	MGKNIEHKKATDEQGLSHEEIWWKIRYLDPDIKRGDSVVIITVLAILSIVGVVVALLYSRGLCD*
Ga0179594_103830071	3300020170	Vadose Zone Soil	MGRPIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVISTVTAIFAIVGVVVALLYSRGL
Ga0179592_101497182	3300020199	Vadose Zone Soil	MGKNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVTITVLAILAIVGVVVALLYSRGL
Ga0179592_103424911	3300020199	Vadose Zone Soil	MEKHIEHEKAKDEQSLSDREIWWKIRYLDPDIKRADSVVIITVLAILSIVGVVVALLYSRGL
Ga0210407_102276482	3300020579	Soil	MEKHIEHKKAKAEQSLSDREIWWMIRYLDPDIKRSDSVVAITVLAIVSIVGVVVALLYSRGL
Ga0210403_104823482	3300020580	Soil	MEKHIEHKNTKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Ga0210399_105526742	3300020581	Soil	VGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSDCMVIITVLTILAIVGIVVALLYGRGL
Ga0210395_100308537	3300020582	Soil	MGKHIEHKKPTDEQGLSDQEIWWKIRYLDPDTKRSDSVVTITVLAILAIVG
Ga0210395_108931481	3300020582	Soil	NMGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDTKRSDSVVTITVLAILAIVGIVVALLYGRGL
Ga0210401_106413852	3300020583	Soil	MEKHIEHKKAKNEPSLSDREIWWKIRYLDPDIKSSDSVVIITVLAILSIVGIVVALLYSRGL
Ga0210401_107678802	3300020583	Soil	MGRHIEHKKATGEQGPSDQEIWWKIRYLDPDIKRSDSVVIITALAILAIVGVVAALLYSRGL
Ga0179596_106060201	3300021086	Vadose Zone Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILLIVGVVIASLYSRGL
Ga0210389_102038981	3300021404	Soil	MGKHIEHKKTTDEQGLSEKEIWWKIRYLDPDIKRSDSVVIITVLTILAIVGIVVAL
Ga0210384_110431501	3300021432	Soil	MGKHVSIKKDEQSLSDQEIWWRIRYLDPDVKRSDSAVIITVLAILLIVGVVIALLYSHGLRE
Ga0210390_100957554	3300021474	Soil	MEKHIEHKKAKDEPSLSNREIWWKIRYLDPDIERSDSVVIFTVLAIVSIVGVVVAMLYSRGL
Ga0222728_11149262	3300022508	Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDTKRSDSMVIITVLAILAIVGIVVALLYGRGLRD
Ga0137417_11262102	3300024330	Vadose Zone Soil	MGRPIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL
Ga0209131_10052496	3300026320	Grasslands Soil	MEKHIEHNKAKNEQSLSDREIWWKIRYLDPDIKRSDGVLIVTVLAILSIVGVVVALLYSRGL
Ga0257178_10588101	3300026446	Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVALLYSRGL
Ga0257154_10104652	3300026467	Soil	MEKHIEHKKAKDGQTLSDREIWWKIRYLDPDTKRSDCVVIITMLAILSIVGVIVALLYSRGL
Ga0257172_10782191	3300026482	Soil	MGNNIERKKATDEQGLSDQEIWWKIRYLDPEIKRSDSVVTITVLAILAIVGVVVALLYSRGL
Ga0257160_10225101	3300026489	Soil	MEKHIEHKKTKDEQTLSDREIWWTIRYLDPDTKRSDCVVIITMLAILSIVGVIVALLYSRGL
Ga0257161_10336582	3300026508	Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Ga0257168_10118562	3300026514	Soil	MEKHIEHKKAKDEQNLSDREIRWKIRYLDPDIKRSDSVVIFTVLAILAIVFIVVALLYSRGL
Ga0257168_10656581	3300026514	Soil	MGNNIERKKATDEQGLSDQEIWWKIRYLDPDIKRSDGVVTITVLAILAIVGVVVALLYSRGL
Ga0209648_100397726	3300026551	Grasslands Soil	MGNNIEHKKATNEQGLSDQEIWWKIRYLDPDIKRSDSVVIINVLAILAIVGVVVALLYSRGL
Ga0209648_103626773	3300026551	Grasslands Soil	MEKHIEHKKAKDEQSLSDREIWWTIRYLDQDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Ga0179587_102805982	3300026557	Vadose Zone Soil	MEKHIEHKKAKGEQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILLIVG
Ga0179587_109376441	3300026557	Vadose Zone Soil	MEKHIEHEKAKDEQSLSDREIWWKIRYLDPDIKRADSVVIITVLAILSIVGVVVALLYSRGS
Ga0209007_10043723	3300027652	Forest Soil	MEKHIEHKKAKDEQGLSDREIWRKIRYLDPDIKRIDSVFMITVLAILSILGVVVALLYCRGL
Ga0209588_10920962	3300027671	Vadose Zone Soil	MEKHIEHKKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL
Ga0209167_100253054	3300027867	Surface Soil	ASRRFNMGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSDCMVIITVLTILAIVGIVVALLYGRGL
Ga0209488_100236786	3300027903	Vadose Zone Soil	MEKHIEHKKALDEKRLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Ga0209526_102469462	3300028047	Forest Soil	MGKHIDHNKAKDEQSLSDQEIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGL
Ga0137415_100548764	3300028536	Vadose Zone Soil	MGKNIEHKKATDEQGLSDQEIWWKIRYLDPDIKRSDSVVIITVTAIFAIVGVVVALLYSRGL
Ga0137415_100978134	3300028536	Vadose Zone Soil	MERHIEHKKTKDEQSLSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVAWLYSRGL
Ga0308309_102257602	3300028906	Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDTKRSDSVVIITVLAILAIAGIVVALLYGRGL
Ga0222749_100373551	3300029636	Soil	KHIEHKKAKNEPSLSDREIWWKIRYLDPDIKSSDSVVIITVLAILSIVGIVVALLYSRGL
Ga0073994_100235791	3300030991	Soil	MEKHIEHKKAKDEQSVSDREIWWKIRYLDPDIKRSDSVVIITVLAILSIVGVVVALLYSRGV
Ga0170834_1000797982	3300031057	Forest Soil	EHKKTTDEQGLSDQEIWWKIRYLDPDINRSDSVVIMTVLTILAIVGIVVALLYGRGL
Ga0170824_1034205331	3300031231	Forest Soil	LRPGRPFVRASRRFNMGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDINRSDSVVIMTVLTILAIVGIVVALLYGRGL
Ga0170820_137177023	3300031446	Forest Soil	MGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDINRSDSVVIMTVLTILAIVGIVVALLYGRGL
Ga0307476_105337312	3300031715	Hardwood Forest Soil	MGKHIEHKTTTDEQGLSDQEIWWKIRYLDPDTKRSDSVVIITVLAILAIVGIAVALLYGRGL
Ga0307474_100111001	3300031718	Hardwood Forest Soil	VGKHIEHKKPMDEQGLSEKEIWWKIRYLDPDIKRSDSEVIITVLAILAIVGIVVALLYGRGL
Ga0307474_100189575	3300031718	Hardwood Forest Soil	MGRHIEHKKATGEQGPSDQEIWWKIRYLDPDIKRSDSVVIITVLAILAIVGVVAALLYSRGF
Ga0307477_105000612	3300031753	Hardwood Forest Soil	MGKHVSIKKDEQSLSDQEIWWRIRYLDPDVKRSDSAVIITVLAILLIVGVVIALLYSH
Ga0307475_100130758	3300031754	Hardwood Forest Soil	MEKHIEHKKAKNEQSPSDREIWLKIRYLDPDIKRSDSVVIITVLAILSIVGVVFALLYSRGL
Ga0307475_112725792	3300031754	Hardwood Forest Soil	VGKHIEHKKTTDEQGLSDQEIWWKIRYLDPDIKRSHSAVIITVLAILTIVGIVVALLYGRGL
Ga0307478_100545804	3300031823	Hardwood Forest Soil	DEQGLSDQEIWWKIRYLDPDTKRSDSVVIITVLAILAILGIAVALLYGRGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094178

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences