Metagenome Family F094128

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094128
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	59 residues
Representative Sequence	VLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC
Number of Associated Samples	40
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.83 %
% of genes near scaffold ends (potentially truncated)	50.94 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (59.434 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (30.189 % of family members)
Environment Ontology (ENVO)	Unclassified (44.340 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.12% β-sheet: 22.35% Coil/Unstructured: 63.53%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04392	ABC_sub_bind	2.83
PF01627	Hpt	2.83
PF13670	PepSY_2	1.89
PF01068	DNA_ligase_A_M	1.89
PF07345	DUF1476	0.94
PF12244	DUF3606	0.94
PF11306	DUF3108	0.94
PF00353	HemolysinCabind	0.94
PF00816	Histone_HNS	0.94
PF00216	Bac_DNA_binding	0.94
PF11295	DUF3096	0.94
PF03481	Sua5_C	0.94
PF13676	TIR_2	0.94
PF00989	PAS	0.94
PF07505	DUF5131	0.94
PF13545	HTH_Crp_2	0.94
PF03401	TctC	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.83
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.89
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.94
COG2916	DNA-binding protein H-NS	Transcription [K]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
All Organisms	root	All Organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
cellular organisms	root	All Organisms → cellular organisms	39.62 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.08 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.30 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.43 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.66 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.94 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Roseicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Roseicella frigidaeris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	0.94 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.94 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.94 %
Bradyrhizobium iriomotense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.94 %
Roseicella frigidaeris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	0.94 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.94 %
Bradyrhizobium iriomotense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2040502001\|FACENC_GAMC6GA01AVAYI	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium iriomotense	517	Open in IMG/M
2070309009\|GPKNP_GG3DY5401B453Q	Not Available	509	Open in IMG/M
3300000955\|JGI1027J12803_101748625	Not Available	647	Open in IMG/M
3300000955\|JGI1027J12803_105780251	Not Available	936	Open in IMG/M
3300005332\|Ga0066388_100106227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3288	Open in IMG/M
3300005332\|Ga0066388_100704987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300005332\|Ga0066388_101552172	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300005332\|Ga0066388_101752603	Not Available	1102	Open in IMG/M
3300005332\|Ga0066388_101774706	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300005332\|Ga0066388_103517339	Not Available	800	Open in IMG/M
3300005332\|Ga0066388_104175064	Not Available	736	Open in IMG/M
3300005332\|Ga0066388_104367379	Not Available	720	Open in IMG/M
3300005332\|Ga0066388_106809579	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005332\|Ga0066388_107787685	Not Available	536	Open in IMG/M
3300005713\|Ga0066905_100745768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300005713\|Ga0066905_100788000	Not Available	823	Open in IMG/M
3300005713\|Ga0066905_100855771	Not Available	792	Open in IMG/M
3300005713\|Ga0066905_101150164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300005713\|Ga0066905_101174048	Not Available	685	Open in IMG/M
3300005764\|Ga0066903_100659789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1832	Open in IMG/M
3300005764\|Ga0066903_100829651	Not Available	1659	Open in IMG/M
3300005764\|Ga0066903_100974674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1546	Open in IMG/M
3300005764\|Ga0066903_101320104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1349	Open in IMG/M
3300005764\|Ga0066903_101545721	Not Available	1255	Open in IMG/M
3300005764\|Ga0066903_101640244	All Organisms → Viruses → Predicted Viral	1221	Open in IMG/M
3300005764\|Ga0066903_101786823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1174	Open in IMG/M
3300005764\|Ga0066903_102520577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	996	Open in IMG/M
3300005764\|Ga0066903_103236679	Not Available	880	Open in IMG/M
3300005764\|Ga0066903_103256260	Not Available	878	Open in IMG/M
3300005764\|Ga0066903_103356595	Not Available	864	Open in IMG/M
3300005764\|Ga0066903_103570221	Not Available	838	Open in IMG/M
3300005764\|Ga0066903_106427510	Not Available	613	Open in IMG/M
3300005764\|Ga0066903_107112663	Not Available	580	Open in IMG/M
3300005764\|Ga0066903_107429212	Not Available	566	Open in IMG/M
3300005764\|Ga0066903_108442910	Not Available	525	Open in IMG/M
3300005937\|Ga0081455_10995482	Not Available	519	Open in IMG/M
3300005937\|Ga0081455_11036819	Not Available	507	Open in IMG/M
3300005981\|Ga0081538_10158601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1010	Open in IMG/M
3300005983\|Ga0081540_1022225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3748	Open in IMG/M
3300006038\|Ga0075365_10016872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4455	Open in IMG/M
3300006038\|Ga0075365_10095573	Not Available	2029	Open in IMG/M
3300006038\|Ga0075365_10098030	Not Available	2005	Open in IMG/M
3300006038\|Ga0075365_10196773	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300006038\|Ga0075365_10264931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1208	Open in IMG/M
3300006038\|Ga0075365_10452957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	906	Open in IMG/M
3300006038\|Ga0075365_10930016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300006051\|Ga0075364_10610870	Not Available	745	Open in IMG/M
3300006058\|Ga0075432_10533316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300006177\|Ga0075362_10215185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300006844\|Ga0075428_101424765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300006844\|Ga0075428_101721563	Not Available	654	Open in IMG/M
3300006845\|Ga0075421_100444309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1550	Open in IMG/M
3300006845\|Ga0075421_100619660	Not Available	1269	Open in IMG/M
3300006845\|Ga0075421_101305232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300006845\|Ga0075421_101337504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	791	Open in IMG/M
3300006845\|Ga0075421_101432769	Not Available	759	Open in IMG/M
3300006846\|Ga0075430_101394914	Not Available	576	Open in IMG/M
3300006853\|Ga0075420_100496256	Not Available	1054	Open in IMG/M
3300006880\|Ga0075429_100459385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300009094\|Ga0111539_10674209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1204	Open in IMG/M
3300009094\|Ga0111539_10841238	Not Available	1068	Open in IMG/M
3300009094\|Ga0111539_13328787	Not Available	517	Open in IMG/M
3300009100\|Ga0075418_10374292	Not Available	1522	Open in IMG/M
3300009100\|Ga0075418_10762686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1044	Open in IMG/M
3300009100\|Ga0075418_11729951	Not Available	680	Open in IMG/M
3300009100\|Ga0075418_11848923	Not Available	657	Open in IMG/M
3300009137\|Ga0066709_100169012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2827	Open in IMG/M
3300009147\|Ga0114129_11088530	Not Available	1001	Open in IMG/M
3300009147\|Ga0114129_13075702	Not Available	546	Open in IMG/M
3300009156\|Ga0111538_12264947	Not Available	682	Open in IMG/M
3300010043\|Ga0126380_10294010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1151	Open in IMG/M
3300010043\|Ga0126380_10636558	Not Available	846	Open in IMG/M
3300010047\|Ga0126382_10413197	Not Available	1057	Open in IMG/M
3300010047\|Ga0126382_11011203	Not Available	729	Open in IMG/M
3300010361\|Ga0126378_12239229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300010362\|Ga0126377_10547187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1196	Open in IMG/M
3300010362\|Ga0126377_11120068	Not Available	856	Open in IMG/M
3300010362\|Ga0126377_11301374	Not Available	799	Open in IMG/M
3300010362\|Ga0126377_11460152	Not Available	757	Open in IMG/M
3300010362\|Ga0126377_11979783	Not Available	659	Open in IMG/M
3300010362\|Ga0126377_12197345	Not Available	628	Open in IMG/M
3300012948\|Ga0126375_10776953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M
3300015371\|Ga0132258_10110374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6508	Open in IMG/M
3300015371\|Ga0132258_10471521	Not Available	3133	Open in IMG/M
3300015371\|Ga0132258_10563030	All Organisms → cellular organisms → Bacteria → Proteobacteria	2858	Open in IMG/M
3300015371\|Ga0132258_10754563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2451	Open in IMG/M
3300015371\|Ga0132258_13426139	Not Available	1088	Open in IMG/M
3300015372\|Ga0132256_101141096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300015373\|Ga0132257_103392984	Not Available	580	Open in IMG/M
3300015374\|Ga0132255_100144516	All Organisms → cellular organisms → Bacteria	3307	Open in IMG/M
3300016422\|Ga0182039_10198604	Not Available	1598	Open in IMG/M
3300018027\|Ga0184605_10017844	Not Available	2813	Open in IMG/M
3300026325\|Ga0209152_10133433	Not Available	946	Open in IMG/M
3300027909\|Ga0209382_10218440	Not Available	2177	Open in IMG/M
3300027909\|Ga0209382_10533443	Not Available	1288	Open in IMG/M
3300027909\|Ga0209382_11550893	Not Available	657	Open in IMG/M
3300027909\|Ga0209382_11562363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → Roseicella frigidaeris	654	Open in IMG/M
3300031546\|Ga0318538_10097666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1512	Open in IMG/M
3300031720\|Ga0307469_10877935	Not Available	829	Open in IMG/M
3300032091\|Ga0318577_10605189	Not Available	521	Open in IMG/M
3300032180\|Ga0307471_100179770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2085	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.77%
Host-Associated	Host-Associated	46.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.83%
Plants	Host-Associated → Plants	46.23%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.42%
Roots	Host-Associated → Plants → Roots	10.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.43%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	30.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	25.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.26%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	9.43%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental	Open in IMG/M
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_1425640	2040502001	Soil	KIVGRIFFLDAVGPQGRPWMWASGHNGDYRRAAHGHEATREQAMAAFAKSWRRE
GPKNP_07074590	2070309009	Soil	GEWRDDDFDVLEDGVVVGRIFKVPVAPQDRSWMWASGHSADTIKRAAHGYEATREAAMAAFRKSWRRE
JGI1027J12803_1017486251	3300000955	Soil	ADGKLVGRIFKVPIAPQNRTWMWASGHNRGIYHAAHGYEPTREDAMAAFAKSWRG*
JGI1027J12803_1057802511	3300000955	Soil	WNQDDYDVLEDGVIVGRIFKVPIAPQDQPWMWASGHNGEIRRAAHGYEPTREAAMAAFVKSWRH*
Ga0066388_1001062278	3300005332	Tropical Forest Soil	EDGVIVGRIFLSPAASRDRPWMWASGYNGDIKRAAYGYEPTREAAMAAFAKSWRR*
Ga0066388_1007049871	3300005332	Tropical Forest Soil	VLENGVVVGRIFLVPVAPQGRPWMWASGHGGQIKRAAHGYEPTREAAMAAFAESWQRQ*
Ga0066388_1015521722	3300005332	Tropical Forest Soil	VLEDGVVVGRIFKVPGAPQDRPWMWASGHGGHIERAAHGYEPKREAAMAAFAKSWRR
Ga0066388_1017526031	3300005332	Tropical Forest Soil	VLEDGVVVGRIFFLDAVGPQGRPWMWASGHNSDIKRAAHGYEATREAAMAASAKSWRR*
Ga0066388_1017747063	3300005332	Tropical Forest Soil	VLQDGIIVGRIFLSPAAPQERPWMWASGHNADICRAAFGYEPSREAAMAAFANSWRKE*
Ga0066388_1035173393	3300005332	Tropical Forest Soil	VGRIFHLEAAAPEGRPWMWASGHNGDIKRAAHGYEATREAAMAAFAKSWRRQ*
Ga0066388_1041750642	3300005332	Tropical Forest Soil	VLEDRVIVGVGPHGRVWASGHNGDIKRASYGYEQTREAAMGAFAKSWRRE*
Ga0066388_1043673791	3300005332	Tropical Forest Soil	LRDDDYDVEDDVIVGRIFLVPVAPEGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0066388_1068095791	3300005332	Tropical Forest Soil	RIFFLDAVAPEGRPWMWAGGHSAATVKRAAHGYAATREEAMAAFAKSWRR*
Ga0066388_1077876851	3300005332	Tropical Forest Soil	VLEEGVVVGRIFKVPVAPEGRPWMWVSGHGGHHIERAAHGYEATREDAMAAFAKSWRRD*
Ga0066905_1007457683	3300005713	Tropical Forest Soil	LENGVIVGRIFKVPIAPQDRTWMWASSHNGHIRRAAHGDEATCEEAVAAFAKSWRRE*
Ga0066905_1007880002	3300005713	Tropical Forest Soil	VLENGVVVSRIFASTLSGRRAAPGVWASGHNGEISRAAHGFEATREAAMAAFAKSWRR*
Ga0066905_1008557712	3300005713	Tropical Forest Soil	SGQWRDDDYDVLENGVVVGRIFTVPTAPAGRPWMWASGHDGQIKRAVHGYAETCEAAMAA
Ga0066905_1011501641	3300005713	Tropical Forest Soil	LENGVIVGRIFKVPIAPQDRHWMWASGRNGHIRLSAHGYEATREAAMAAFAKSWRRE*
Ga0066905_1011740481	3300005713	Tropical Forest Soil	RIFFLDAVGPQGRPWMWASGHSADSIKRAAHGYEPTREAAMMSASAFASSFLAAIASFI*
Ga0066903_1006597892	3300005764	Tropical Forest Soil	VSEDDYDVLEDGRVVGRIFKVPVAPQSRPWMWASGHSGHITRAAHGYEQIREAAMAAFAKSWREKEGVK*
Ga0066903_1008296512	3300005764	Tropical Forest Soil	VGRIFFLDAVAPEGRPWMWASGHGGHIERAAHGYEPTREAAMAAFAKSWRQE*
Ga0066903_1009607391	3300005764	Tropical Forest Soil	DYDVLENGEVVGRIFHLDAAAPESRPWMRASGHGRHMKRAAHGYAATREEAMAAFAKSWRRT*
Ga0066903_1009746742	3300005764	Tropical Forest Soil	VLEDGVVVGRIFKVPGAPQDRPWMWASGHGGHIERAAHGYEPKREAAMAAFAKSWRRE*
Ga0066903_1013201042	3300005764	Tropical Forest Soil	VLEDGKVVGRIFMVPTAPQGRPWMWASGHGGHHIERAAHGYEATREAAMAAFAKSWRRQ*
Ga0066903_1015457214	3300005764	Tropical Forest Soil	VLENGKIVGRIFFLDAAAPEGRPWMWASGHNGDIKRAAHGYEATREAAMVAFAKSWRRE*
Ga0066903_1016402443	3300005764	Tropical Forest Soil	LEDGKVVGRIFHLEAAAPEGRPWMWASGHGGHIKRAAHGYEATREAAMAAFAKSWRGK*
Ga0066903_1017868233	3300005764	Tropical Forest Soil	VLENGIVVGRIFKVQVAPENRPWMWASGHNGDLRRAAHGYEQTREAAMAAFAKSWRGSPSFGAIERA*
Ga0066903_1025205771	3300005764	Tropical Forest Soil	VLEGGIIVGRIFLSPAAPQDRPWMWASGHNGDLLRAAHGYEQTREEAMVAFKRSWHREV*
Ga0066903_1032366794	3300005764	Tropical Forest Soil	MLENGVVIGRIFFASAGGPEGRSWMWASGHNGDYDRAATGFEVTREDAMAARAKSWRRM*
Ga0066903_1032562603	3300005764	Tropical Forest Soil	DDYDVLENGVVVGRICKEEAAPPDRSWGWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRA*
Ga0066903_1033565951	3300005764	Tropical Forest Soil	YDVLEDGKVVGRIFHLEAAAPEGRPWMWASGHGGHIERAAHGYEATREAAMAAFAKS*
Ga0066903_1035702212	3300005764	Tropical Forest Soil	VLENGVVVGRIFFLNAVAPEGRPWIWASGDNAGGVARAAHGYEPTREAAMAAFAKSWRG
Ga0066903_1064275102	3300005764	Tropical Forest Soil	VVGRIFLVTVAPEGRPWMWASVHDGQIARAAHGYEPTREAVMMAFPKSWRRKLV*
Ga0066903_1071126631	3300005764	Tropical Forest Soil	DDYDVLADGKLVGRIFKVPIGPQDRTWMWANGRNRGIHHAVHGYEPTCEDAMAAFAKSWRG*
Ga0066903_1074292122	3300005764	Tropical Forest Soil	VLENSVVVGRIFTVPTAPEGRPWMWASGHGGHIERAAHGYEATREVG*
Ga0066903_1084429101	3300005764	Tropical Forest Soil	VRTEQPRKVGRIFNLDAVAPEGRPWMWASGHSAGTVHRAAHGYEPTREESMAAFAKSWRRE*
Ga0081455_109954822	3300005937	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFLVPVAPQGRPWMWASGHNAGGVARAAHGYAATREAAMAAFAKSWRREISGCGDRQ
Ga0081455_110368191	3300005937	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFFLDAVGPQGRSWMWASGHNGDIKRAAHGYEQTREAAMAAFAKSWRREVAIE*
Ga0081538_101586013	3300005981	Tabebuia Heterophylla Rhizosphere	VEAGVIVGRFFFLDAVGPQGRPWMWATGHNGDIKRAAHGYEATREAAMAAFAKSWRRG*
Ga0081540_10222255	3300005983	Tabebuia Heterophylla Rhizosphere	VLENGVVVGRIFFLDAVGPQGRTWMWASGHNGEIKRAAHGYAGTREAAMAAFAKSWRRQ*
Ga0075365_100168725	3300006038	Populus Endosphere	VLENGVVIGRIFCLDAVGPHGRPWMWASGHSAATVKRAAHGYEPTREAAIAAFARSWRRK
Ga0075365_100955733	3300006038	Populus Endosphere	MTIENGVVVGRILCLDAVGPHDRPWMWASGHNGDIKRAACGYEQTREAAMAAFAKSWRRRASDAR*
Ga0075365_100980303	3300006038	Populus Endosphere	VGRIFCLDVVGPQGRPWMWASGHSADSVKCAAYGYEATREAAMAAFARSWRRS*
Ga0075365_101967732	3300006038	Populus Endosphere	VVGRIKVPVAPQGRRWMWASGHSATTVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075365_102649312	3300006038	Populus Endosphere	VLEDGVIVGRILNVPIAPQDQPWMWASGHSAASVKRAAHGYDATREAAMAAFAKSWRRET
Ga0075365_104529572	3300006038	Populus Endosphere	QWRDDDYDVLEDGVIVGRIFLSPGAPQDRQWMWASGHSAATVKRAAHGYEPTREAAMAAFVKSWRKG*
Ga0075365_106990572	3300006038	Populus Endosphere	VKVGRIFHLDAAAADGRPWMWASGHAAGTVARARHGYEATREAAMAAFAKRWRRE*
Ga0075365_109300161	3300006038	Populus Endosphere	LENGVVVGRIFLLGAVAPKGRPWMWASAHSAATVRRAAHGYEPTRDAAMAAFAKSWRCQAR*
Ga0075364_106108702	3300006051	Populus Endosphere	LVTTRKTSRARIVVGRIKVPVAPQGRRWMWASGHSATTVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075432_105333161	3300006058	Populus Rhizosphere	LENGVVIGRIFKSSGAPQDRPRMWASGHNGELRRAAHGYEPTREAAMAAFGKSWRRV*
Ga0075362_102151852	3300006177	Populus Endosphere	DYAALENGVIVGRIFKVPIAPADRPWMWASGHNGDIKRAAHGYEPTCEAAMAAFAKSWRRET*
Ga0075428_1006667373	3300006844	Populus Rhizosphere	VGRIFHLDAAAADGRPWMWASGHAAGTVARARHGYEATREAAMAAFAKRWRRE*
Ga0075428_1014247652	3300006844	Populus Rhizosphere	GQWRDDDYDVLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC*
Ga0075428_1017215633	3300006844	Populus Rhizosphere	GRIFKVPIAPGDRPWMWASGHNGHIRRAPHGYAGTREDAMAAFAKNWRRE*
Ga0075421_1004443091	3300006845	Populus Rhizosphere	DDYDVVENGVIVGRIFLDAVGPRARPGMWASGHNADYRRAAHGYEQTREAAMAAFAKSWRRA*
Ga0075421_1006196602	3300006845	Populus Rhizosphere	MPSLMLKRASANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE*
Ga0075421_1013052322	3300006845	Populus Rhizosphere	VLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC*
Ga0075421_1013375041	3300006845	Populus Rhizosphere	QDDFDVVEDGVIVGRIFKVPIAPQDRHWMWASGHNGDIRRAAHGYEATREAAMAAFAKSWRQE*
Ga0075421_1014327691	3300006845	Populus Rhizosphere	WRDDDYDVLENGVMVGRISKEQIAPQDRPRSWASGHSAATVKRAAHGYEPTREAAMAASAKSWRRG*
Ga0075421_1016368802	3300006845	Populus Rhizosphere	VCIFFLDAVGPKDRPWMWASGHNGEIRRAAHGYEPTREAAMAAFAKSWRRET*
Ga0075430_1013949142	3300006846	Populus Rhizosphere	VVVGRIFTVPTAPEGCPWMWASGHSADSVKRAAHGYEATREAAMAAFAKSWRRS*
Ga0075420_1004962561	3300006853	Populus Rhizosphere	VVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE*
Ga0075429_1004593853	3300006880	Populus Rhizosphere	YDVVENGVIVGRIFLDAVGPRGCPWMWASGHNGDYRRAAHGYEPTREAAMAALAKSWRRE
Ga0111539_106742093	3300009094	Populus Rhizosphere	VLEDGVVVGRIFLSPGAPQERARMWASGHNGDIPCAALGDEPTREAAMAAFAKSRRRE*
Ga0111539_108412383	3300009094	Populus Rhizosphere	DVLEDGVVVGRICKEEAAPQGRQWGWASGHSAATVKRAAHGYEATREEAMAAFAKSWHGQR*
Ga0111539_133287871	3300009094	Populus Rhizosphere	EDYSVLENGVVVGRIFKAQVAPQDRPWMWASGHSAATVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0075418_103742921	3300009100	Populus Rhizosphere	DYDVLEDGVIVGRIFKVPIAPQDQPWMWASGHNGDYRRAAFGYEPTREDAMAAFAKSWRRAQ*
Ga0075418_107626862	3300009100	Populus Rhizosphere	FDVVEDGVIVGRIFKVPIAPQDRHWMWASGHNGDIRRAAHGYEATREAAMAALTKSWRQS
Ga0075418_117299511	3300009100	Populus Rhizosphere	DNQDDYDVLENGVVVGRIFTVPTAPEGCPWMWASGHSADSVKRAAHGYEATREAAMAAFAKSWRR*
Ga0075418_118489232	3300009100	Populus Rhizosphere	ANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE
Ga0066709_1001690124	3300009137	Grasslands Soil	MASWVGRIFLSPVAPEDRPWMWASGHNGDIRRAAYGYEPTREAAMAAFAKSWRRE*
Ga0114129_110885301	3300009147	Populus Rhizosphere	GVMVGRISKEQIAPQDRPRSWASGHSAATVKRAAHGYEPTREAAMAASAKSWRRG*
Ga0114129_130757021	3300009147	Populus Rhizosphere	VLEDGVIVGRIFMLPIAPRNRPWMWASGHNGHIRRAARGYEPTR
Ga0111538_122649471	3300009156	Populus Rhizosphere	VVVGRIFTVPIAPQGRPWMWASDHSADSVKRAAHGYEATREAAMAAFAKSWRR*
Ga0126380_102940102	3300010043	Tropical Forest Soil	LRDDDYDLEDDVIVGRIFLVPVAPEGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0126380_106365583	3300010043	Tropical Forest Soil	LENGVVVGRICKEQAAPQGRQWGWASGHNGDYRRAADGYEATREAAMAAFAKSWRRE*
Ga0126382_104131973	3300010047	Tropical Forest Soil	TGRIFHLDAAAPEGSPWMWASGHGRQMKRAAHGYEATREAAMAAFAKSWRRQ*
Ga0126382_110112032	3300010047	Tropical Forest Soil	VLENGKIVGRIFKVPIAPQDRHWMWASGHNGHIRRAAHGYEPMRESMAAFAKSWRRTLPL
Ga0126378_122392291	3300010361	Tropical Forest Soil	VEDGVIVGRIFLAPVAPEGRPWMWASSHNGDIKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0126377_105471871	3300010362	Tropical Forest Soil	VSENGAVVGRIFFLDAVGPQGRPWMWASGHGGHIKRAAHGYEATREAAMAAFAKSWRGRLSQRE*
Ga0126377_111200682	3300010362	Tropical Forest Soil	MLENGVVVGRIFCLDAVGPQGRPWMWASGHNGDIKRAAYGYEATREAALAAFARE*
Ga0126377_113013742	3300010362	Tropical Forest Soil	VLEDGKIVGRIFLLDAAAADGRAWMWASGHGGHIERAAHGYEAAREAAMAAFAKSWRR*
Ga0126377_114601523	3300010362	Tropical Forest Soil	LLENGVVVGRIFLSPGAPQDRQWMWASGHSADSIKRAAHGYEATREAAMTAFAKSWRRE*
Ga0126377_119797831	3300010362	Tropical Forest Soil	FDVVENGIIVGRIFKVPIAPQDRPWMWTSGHNGHIRRAAHGYELTREAAMTAFSKSWRQES*
Ga0126377_121973451	3300010362	Tropical Forest Soil	VLENVVVIGRIFKVPVAPPDRPWMWASGHNGDIKRVAHGYEPTRDAAMAAFAKSWRQ*
Ga0126377_122537742	3300010362	Tropical Forest Soil	DNDYDVLEDGKVVGRIFHLEAAAPEGRPWMWASGHAPGTFARARHGYEPTREAAMAAFAKSWRRE*
Ga0126375_107769531	3300012948	Tropical Forest Soil	VEDGVIVGRIFLAPVAPEGRPWMWASSHNGDIKRAAHGYEPTREAAMAAF
Ga0132258_1011037412	3300015371	Arabidopsis Rhizosphere	VGRIFHLEAAAPEGRPWMWASGHGGHIERAAHGYEATREAAMAAFAKSWRRS*
Ga0132258_104715219	3300015371	Arabidopsis Rhizosphere	VVGRIFFLDAVGPQSRPSMWASGHNGDYRRAAHGYESTRGAAMAAFAKSWRRE*
Ga0132258_105630303	3300015371	Arabidopsis Rhizosphere	VLEKGILVGRIFFLDAVGPHGRPWMWASGHSAATIRRAAHGHEPTREAAMAAFAKSWRRG
Ga0132258_107545637	3300015371	Arabidopsis Rhizosphere	VLEDGAVVGRIFKVPVVPTDRLWMWASGHNGDIKRAAYGYEQTREAAMAAFAKSWRR*
Ga0132258_134261391	3300015371	Arabidopsis Rhizosphere	DYNVLENGTVVGRIFFLDAVGPHGRPWMWTIRDSKGCSPTHGYEPTREAAMAAFAKSWRR
Ga0132256_1011410962	3300015372	Arabidopsis Rhizosphere	DGIVVGRIFKVAPPDRPWMWASGHSAATVKRVAHGYERTREVAMAAFAKSWRRDSLSKK*
Ga0132257_1033929841	3300015373	Arabidopsis Rhizosphere	DDYDYDVLENGVVVGRIQGRAWMWASGHSADSVKRAAHGYEPTREAAMAAFAKSWRRE*
Ga0132255_1001445165	3300015374	Arabidopsis Rhizosphere	VLENRVVVGRSFTVPTAPQGRPWMWASGHSAATIKRAAHGYEPTREAAMAAFAKTWLTVWNL*
Ga0182039_101986045	3300016422	Soil	VLEAGVVVGRIFLVPTGPEGRPWMWASGHNGQISRAAHGYEPTREAAMSAFAKSWRGQR
Ga0184605_100178448	3300018027	Groundwater Sediment	VGRIFKVPIAPRDRHWMWASGHNGHIRRAAHGYEPTREAAMLAFAKSWHREM
Ga0209152_101334333	3300026325	Soil	MASWVGRIFLSPVAPEDRPWMWASGHNGDIRRAAYGYEPTREAAMAAFAKSWRRE
Ga0209382_102184401	3300027909	Populus Rhizosphere	VLENGIVVGRIFFLDAVGPRGRPWMWASGHNGDIKRAAHGYEPAREAAMAAFTRSWRKS
Ga0209382_105334433	3300027909	Populus Rhizosphere	MPSLMLKRASANVLENGVVVGRIFVTPAAPQHRQWMWASGHNGEIRRAAYGYEATREAAMAAFAKSWRRE
Ga0209382_115508932	3300027909	Populus Rhizosphere	VLEHGVIVGRIFTVPTAPQGRPWMWASGHNGDYRRAAHGYEPTREAATAAFAKSWRRE
Ga0209382_115623632	3300027909	Populus Rhizosphere	EWRDDDYDVLENGVVVGRIFKVPVAPQDRPWMWASGHNGDIKRAAHGYEPTREAAMAAFAKSWRC
Ga0318538_100976661	3300031546	Soil	AALQHVVIVRFQPIAPQDRPWMWASGHNGHTRRAVHGYEPTRETAMAAFAKSWRRE
Ga0307469_108779351	3300031720	Hardwood Forest Soil	IFFLDAVGQQGRPWMWASGHNGDIKRAAHGYEPTREAAMAAFRSWCR
Ga0318577_106051893	3300032091	Soil	VVGRIFLVPTAPEGRPWMWASGHNGQISRAAHGYEPTREAAMSAFAKSWRGQR
Ga0307471_1001797702	3300032180	Hardwood Forest Soil	VLENGVVVGRISKVQVAPPEHPWMWASGHNGDINRAAHGYEPTRETALAAFAKSWCRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094128

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences